Wall clock time and date at job start Sun Mar 29 2020 22:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.53008 * 109.47089 * 240.00139 * 2 1 3 5 5 O 1.42898 * 109.46862 * 120.00346 * 2 1 3 6 6 C 1.42901 * 114.00258 * 59.99979 * 5 2 1 7 7 C 1.53785 * 113.69063 * 110.93650 * 6 5 2 8 8 C 1.53779 * 87.08093 * 139.99216 * 7 6 5 9 9 N 1.46900 * 113.69049 * 220.00567 * 8 7 6 10 10 C 1.46895 * 111.00037 * 252.53571 * 9 8 7 11 11 C 1.53001 * 109.47241 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47294 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99571 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99852 * 179.97438 * 12 11 10 15 15 N 1.31507 * 119.99953 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99773 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47061 * 90.00058 * 16 14 12 18 18 H 1.48496 * 109.47538 * 210.00260 * 16 14 12 19 19 H 1.48502 * 109.47489 * 330.00707 * 16 14 12 20 20 C 1.53781 * 113.61413 * 208.47320 * 6 5 2 21 21 H 1.08994 * 109.47061 * 299.99871 * 1 2 3 22 22 H 1.09005 * 109.46847 * 59.99996 * 1 2 3 23 23 H 1.08995 * 109.46930 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46855 * 179.97438 * 3 2 1 25 25 H 1.08992 * 109.47444 * 299.99923 * 3 2 1 26 26 H 1.09008 * 109.46871 * 59.99957 * 3 2 1 27 27 H 1.09000 * 109.47008 * 299.99853 * 4 2 1 28 28 H 1.08995 * 109.46667 * 60.00376 * 4 2 1 29 29 H 1.09001 * 109.46368 * 180.02562 * 4 2 1 30 30 H 1.09002 * 112.84974 * 339.66626 * 6 5 2 31 31 H 1.09003 * 113.60734 * 254.54335 * 7 6 5 32 32 H 1.08996 * 113.61146 * 25.43833 * 7 6 5 33 33 H 1.09003 * 113.61186 * 89.11185 * 8 7 6 34 34 H 1.00901 * 111.00069 * 128.58311 * 9 8 7 35 35 H 1.08999 * 109.47315 * 300.00403 * 10 9 8 36 36 H 1.09002 * 109.47268 * 59.99916 * 10 9 8 37 37 H 1.09006 * 109.46948 * 300.00250 * 11 10 9 38 38 H 1.09002 * 109.47066 * 59.99783 * 11 10 9 39 39 H 0.97006 * 119.99851 * 180.02562 * 15 14 12 40 40 H 1.09005 * 113.61302 * 334.47944 * 20 6 5 41 41 H 1.08993 * 113.62030 * 105.38790 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 6 2.7260 -3.0503 1.0835 8 6 2.0753 -3.8651 2.2138 9 7 3.0429 -4.4572 3.1471 10 6 3.1382 -5.9104 2.9549 11 6 4.1527 -6.4900 3.9427 12 6 4.2509 -7.9808 3.7452 13 1 3.6502 -8.4662 2.9903 14 6 5.1085 -8.7248 4.5275 15 7 5.8403 -8.1336 5.4464 16 14 5.2297 -10.5728 4.2831 17 1 6.2834 -10.8714 3.2803 18 1 5.5763 -11.2211 5.5733 19 1 3.9257 -11.0950 3.8013 20 6 1.4690 -2.5424 2.7117 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.6768 -1.7489 -1.2493 28 1 1.6768 -0.2073 -2.1392 29 1 3.1301 -0.7216 -1.2490 30 1 0.7074 -2.2518 0.6547 31 1 2.7122 -3.5551 0.1175 32 1 3.7079 -2.6533 1.3408 33 1 1.3321 -4.5814 1.8635 34 1 2.8074 -4.2334 4.1023 35 1 2.1626 -6.3645 3.1281 36 1 3.4614 -6.1217 1.9356 37 1 5.1284 -6.0358 3.7699 38 1 3.8290 -6.2787 4.9619 39 1 6.4440 -8.6570 5.9965 40 1 2.1075 -2.0066 3.4142 41 1 0.4407 -2.6373 3.0603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309025361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:11 Heat of formation + Delta-G solvation = -44.999810 kcal Electronic energy + Delta-G solvation = -17392.848651 eV Core-core repulsion = 14693.790487 eV Total energy + Delta-G solvation = -2699.058164 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.84376 -37.60460 -34.57368 -33.01881 -32.13921 -28.76991 -27.68612 -27.60506 -25.50864 -24.46468 -22.67707 -20.57502 -20.01871 -19.31069 -16.94344 -16.28049 -15.65187 -15.15311 -15.04930 -14.67800 -14.34385 -13.84633 -13.43767 -13.15965 -12.87273 -12.49793 -12.24785 -12.22575 -12.20664 -12.03254 -11.93835 -11.56585 -11.15737 -11.08401 -10.99244 -10.87475 -10.49987 -10.45306 -10.31031 -9.95830 -9.41139 -9.27931 -9.10692 -8.33252 -7.77865 -5.97521 -4.00073 3.33531 3.39417 3.42557 3.59953 4.46159 4.56697 4.60794 4.74953 4.78681 4.82818 4.91269 4.97507 5.07752 5.28559 5.32945 5.38303 5.43836 5.50455 5.56682 5.61601 5.64654 5.80989 5.83328 5.98087 6.04423 6.06838 6.12808 6.27443 6.34389 6.41864 6.54509 7.01830 7.35108 7.56000 7.76548 7.86639 8.00376 8.12063 8.46334 9.07277 9.63505 11.13944 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.060684 B = 0.003408 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.294387 B = 8214.972002 C = 8274.583025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.176 4.176 5 O -0.360 6.360 6 C 0.061 3.939 7 C -0.139 4.139 8 C 0.061 3.939 9 N -0.676 5.676 10 C 0.065 3.935 11 C 0.024 3.976 12 C -0.521 4.521 13 H 0.054 0.946 14 C 0.057 3.943 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.275 1.275 20 C -0.139 4.139 21 H 0.063 0.937 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.338 0.662 35 H 0.015 0.985 36 H 0.057 0.943 37 H 0.025 0.975 38 H 0.014 0.986 39 H 0.260 0.740 40 H 0.096 0.904 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.078 16.827 -11.296 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.064 3.936 3 C -0.195 4.195 4 C -0.233 4.233 5 O -0.279 6.279 6 C 0.003 3.997 7 C -0.177 4.177 8 C -0.050 4.050 9 N -0.307 5.307 10 C -0.063 4.063 11 C -0.013 4.013 12 C -0.560 4.560 13 H 0.072 0.928 14 C -0.144 4.144 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.177 4.177 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.085 0.915 34 H 0.156 0.844 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.044 0.956 38 H 0.032 0.968 39 H 0.070 0.930 40 H 0.115 0.885 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.290 17.009 -11.415 22.924 hybrid contribution -0.885 -1.554 0.084 1.790 sum -11.175 15.455 -11.330 22.184 Atomic orbital electron populations 1.22462 0.96038 1.02432 1.02607 1.21484 0.92847 0.93177 0.86046 1.21750 1.02060 0.93474 1.02173 1.22463 1.02443 1.00866 0.97532 1.88048 1.73811 1.23816 1.42270 1.23520 0.97281 0.81427 0.97516 1.23606 0.99758 0.96112 0.98257 1.22701 0.93451 0.93491 0.95377 1.60665 1.48577 1.13566 1.07921 1.22206 0.98615 0.84240 1.01232 1.19076 0.94148 0.94799 0.93273 1.21184 1.23427 0.92736 1.18690 0.92795 1.25006 0.95635 0.98537 0.95225 1.69975 1.25907 1.35654 1.21709 0.86587 0.78346 0.85549 0.77459 1.20633 1.21222 1.19945 1.23487 1.01091 0.96471 0.96641 0.91772 0.91726 0.92187 0.91753 0.91425 0.91927 0.92173 0.91965 0.91596 0.89724 0.92128 0.88545 0.91482 0.84370 0.96710 0.92419 0.95645 0.96808 0.92997 0.88538 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 8.38 37.16 0.31 -1.16 16 2 C 0.10 1.01 1.12 -90.61 -0.10 0.91 16 3 C -0.14 -1.15 8.84 37.16 0.33 -0.82 16 4 C -0.18 -1.58 8.36 37.16 0.31 -1.27 16 5 O -0.36 -4.55 10.00 -35.23 -0.35 -4.90 16 6 C 0.06 0.73 2.80 -25.92 -0.07 0.66 16 7 C -0.14 -1.94 7.64 -25.92 -0.20 -2.14 16 8 C 0.06 0.91 4.14 -66.90 -0.28 0.63 16 9 N -0.68 -12.46 6.56 -105.87 -0.69 -13.16 16 10 C 0.07 1.41 5.47 -3.83 -0.02 1.39 16 11 C 0.02 0.65 5.23 -27.88 -0.15 0.51 16 12 C -0.52 -15.07 9.11 -34.44 -0.31 -15.39 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 16 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.14 -1.78 7.48 -25.92 -0.19 -1.98 16 21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.50 6.23 -51.93 -0.32 0.17 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.06 0.56 7.01 -51.93 -0.36 0.19 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.90 5.59 -51.93 -0.29 0.61 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.07 0.99 7.87 -51.93 -0.41 0.58 16 34 H 0.34 6.00 8.54 -39.29 -0.34 5.67 16 35 H 0.01 0.31 8.13 -51.93 -0.42 -0.11 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -30.72 328.16 -8.46 -39.18 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.60 Total: 0.69 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -0.47 Total: -17.08 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.04 Total: -39.74 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.35 Total: -4.90 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.72 -8.46 -39.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309025361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.820 kcal (2) G-P(sol) polarization free energy of solvation -30.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds