Wall clock time and date at job start Sun Mar 29 2020 22:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.53008 * 109.47089 * 240.00139 * 2 1 3 5 5 O 1.42898 * 109.46862 * 120.00346 * 2 1 3 6 6 C 1.42901 * 114.00258 * 59.99979 * 5 2 1 7 7 C 1.53785 * 113.69063 * 110.93650 * 6 5 2 8 8 C 1.53779 * 87.08093 * 139.99216 * 7 6 5 9 9 N 1.46900 * 113.69049 * 220.00567 * 8 7 6 10 10 C 1.46895 * 111.00037 * 252.53571 * 9 8 7 11 11 C 1.53001 * 109.47241 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47294 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99571 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99852 * 179.97438 * 12 11 10 15 15 N 1.31507 * 119.99953 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99773 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47061 * 90.00058 * 16 14 12 18 18 H 1.48496 * 109.47538 * 210.00260 * 16 14 12 19 19 H 1.48502 * 109.47489 * 330.00707 * 16 14 12 20 20 C 1.53781 * 113.61413 * 208.47320 * 6 5 2 21 21 H 1.08994 * 109.47061 * 299.99871 * 1 2 3 22 22 H 1.09005 * 109.46847 * 59.99996 * 1 2 3 23 23 H 1.08995 * 109.46930 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46855 * 179.97438 * 3 2 1 25 25 H 1.08992 * 109.47444 * 299.99923 * 3 2 1 26 26 H 1.09008 * 109.46871 * 59.99957 * 3 2 1 27 27 H 1.09000 * 109.47008 * 299.99853 * 4 2 1 28 28 H 1.08995 * 109.46667 * 60.00376 * 4 2 1 29 29 H 1.09001 * 109.46368 * 180.02562 * 4 2 1 30 30 H 1.09002 * 112.84974 * 339.66626 * 6 5 2 31 31 H 1.09003 * 113.60734 * 254.54335 * 7 6 5 32 32 H 1.08996 * 113.61146 * 25.43833 * 7 6 5 33 33 H 1.09003 * 113.61186 * 89.11185 * 8 7 6 34 34 H 1.00901 * 111.00069 * 128.58311 * 9 8 7 35 35 H 1.08999 * 109.47315 * 300.00403 * 10 9 8 36 36 H 1.09002 * 109.47268 * 59.99916 * 10 9 8 37 37 H 1.09006 * 109.46948 * 300.00250 * 11 10 9 38 38 H 1.09002 * 109.47066 * 59.99783 * 11 10 9 39 39 H 0.97006 * 119.99851 * 180.02562 * 15 14 12 40 40 H 1.09005 * 113.61302 * 334.47944 * 20 6 5 41 41 H 1.08993 * 113.62030 * 105.38790 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 6 2.7260 -3.0503 1.0835 8 6 2.0753 -3.8651 2.2138 9 7 3.0429 -4.4572 3.1471 10 6 3.1382 -5.9104 2.9549 11 6 4.1527 -6.4900 3.9427 12 6 4.2509 -7.9808 3.7452 13 1 3.6502 -8.4662 2.9903 14 6 5.1085 -8.7248 4.5275 15 7 5.8403 -8.1336 5.4464 16 14 5.2297 -10.5728 4.2831 17 1 6.2834 -10.8714 3.2803 18 1 5.5763 -11.2211 5.5733 19 1 3.9257 -11.0950 3.8013 20 6 1.4690 -2.5424 2.7117 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.6768 -1.7489 -1.2493 28 1 1.6768 -0.2073 -2.1392 29 1 3.1301 -0.7216 -1.2490 30 1 0.7074 -2.2518 0.6547 31 1 2.7122 -3.5551 0.1175 32 1 3.7079 -2.6533 1.3408 33 1 1.3321 -4.5814 1.8635 34 1 2.8074 -4.2334 4.1023 35 1 2.1626 -6.3645 3.1281 36 1 3.4614 -6.1217 1.9356 37 1 5.1284 -6.0358 3.7699 38 1 3.8290 -6.2787 4.9619 39 1 6.4440 -8.6570 5.9965 40 1 2.1075 -2.0066 3.4142 41 1 0.4407 -2.6373 3.0603 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309025361.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:48:10 Heat of formation + Delta-G solvation = -64.613444 kcal Electronic energy + Delta-G solvation = -17393.699162 eV Core-core repulsion = 14693.790487 eV Total energy + Delta-G solvation = -2699.908675 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.82567 -38.65108 -36.24962 -34.59096 -33.50345 -30.65909 -28.36340 -28.29963 -26.62894 -26.29902 -23.97438 -22.45491 -20.85759 -20.45420 -18.53373 -17.75335 -16.84235 -16.44839 -16.30319 -16.13982 -15.68776 -14.89445 -14.70611 -14.37452 -14.21723 -13.87072 -13.36361 -13.31177 -13.23938 -12.91433 -12.86467 -12.78521 -12.63794 -12.53863 -12.43000 -12.12573 -12.02940 -11.85591 -11.47309 -11.36189 -11.24007 -11.08550 -10.57342 -10.30818 -9.27298 -8.20790 -6.32741 1.40008 1.42046 1.52988 2.40163 2.73721 3.12463 3.47838 3.62809 3.70493 3.90654 3.94026 3.99616 4.05126 4.16137 4.34661 4.53102 4.60094 4.67794 4.69457 4.75225 4.83286 4.87555 4.89129 4.95841 4.98059 5.04797 5.06109 5.16565 5.23873 5.29220 5.39091 5.41764 5.46441 5.67055 5.79348 6.15513 6.32637 6.49237 6.55019 6.84685 7.36628 8.91513 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.060684 B = 0.003408 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.294387 B = 8214.972002 C = 8274.583025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 C -0.137 4.137 4 C -0.174 4.174 5 O -0.382 6.382 6 C 0.075 3.925 7 C -0.141 4.141 8 C 0.053 3.947 9 N -0.686 5.686 10 C 0.085 3.915 11 C 0.031 3.969 12 C -0.546 4.546 13 H 0.061 0.939 14 C -0.001 4.001 15 N -0.932 5.932 16 Si 0.969 3.031 17 H -0.272 1.272 18 H -0.281 1.281 19 H -0.262 1.262 20 C -0.132 4.132 21 H 0.060 0.940 22 H 0.083 0.917 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.090 0.910 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.340 0.660 35 H 0.022 0.978 36 H 0.055 0.945 37 H -0.008 1.008 38 H -0.008 1.008 39 H 0.264 0.736 40 H 0.084 0.916 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.743 16.681 -12.734 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.054 3.946 3 C -0.194 4.194 4 C -0.231 4.231 5 O -0.302 6.302 6 C 0.017 3.983 7 C -0.180 4.180 8 C -0.057 4.057 9 N -0.317 5.317 10 C -0.044 4.044 11 C -0.007 4.007 12 C -0.584 4.584 13 H 0.079 0.921 14 C -0.199 4.199 15 N -0.572 5.572 16 Si 0.793 3.207 17 H -0.198 1.198 18 H -0.206 1.206 19 H -0.186 1.186 20 C -0.170 4.170 21 H 0.079 0.921 22 H 0.102 0.898 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.108 0.892 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.124 0.876 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.158 0.842 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.010 0.990 38 H 0.010 0.990 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.969 16.885 -12.868 24.371 hybrid contribution -0.342 -1.416 0.524 1.548 sum -12.311 15.469 -12.344 23.307 Atomic orbital electron populations 1.22434 0.94602 1.02738 1.03429 1.21773 0.94054 0.93494 0.85250 1.21784 1.01474 0.92973 1.03177 1.22451 1.01639 1.00925 0.98121 1.88029 1.74432 1.23875 1.43831 1.23392 0.96805 0.81092 0.96994 1.23573 0.99390 0.96841 0.98169 1.22845 0.93286 0.94360 0.95168 1.60577 1.50713 1.11537 1.08876 1.21814 0.97176 0.86134 0.99276 1.18933 0.93846 0.94431 0.93464 1.21622 1.23813 0.93938 1.19030 0.92068 1.26012 0.95017 1.04180 0.94683 1.70115 1.26592 1.37889 1.22645 0.85391 0.78937 0.78706 0.77658 1.19761 1.20636 1.18584 1.23413 1.01742 0.94765 0.97100 0.92058 0.89849 0.92090 0.92744 0.89159 0.92192 0.92455 0.89936 0.92882 0.87581 0.91378 0.90914 0.90458 0.84151 0.96021 0.92649 0.99001 0.99000 0.92714 0.89769 0.89532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 8.38 71.98 0.60 -1.81 16 2 C 0.09 1.64 1.12 -10.79 -0.01 1.62 16 3 C -0.14 -2.08 8.84 71.98 0.64 -1.44 16 4 C -0.17 -2.82 8.36 71.98 0.60 -2.22 16 5 O -0.38 -9.25 10.00 -148.98 -1.49 -10.74 16 6 C 0.08 1.70 2.80 31.12 0.09 1.79 16 7 C -0.14 -3.87 7.64 31.12 0.24 -3.63 16 8 C 0.05 1.55 4.14 45.44 0.19 1.74 16 9 N -0.69 -25.49 6.56 -488.85 -3.21 -28.70 16 10 C 0.08 3.70 5.47 86.30 0.47 4.17 16 11 C 0.03 1.69 5.23 29.85 0.16 1.85 16 12 C -0.55 -31.85 9.11 25.60 0.23 -31.62 16 13 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 14 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 15 N -0.93 -58.03 13.29 21.45 0.28 -57.74 16 16 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 20 C -0.13 -3.22 7.48 31.12 0.23 -2.99 16 21 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 23 H 0.06 0.83 6.23 -2.39 -0.01 0.81 16 24 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.06 0.95 7.01 -2.39 -0.02 0.93 16 28 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 1.96 5.59 -2.39 -0.01 1.95 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.08 2.13 7.87 -2.39 -0.02 2.11 16 34 H 0.34 12.28 8.54 -89.69 -0.77 11.51 16 35 H 0.02 0.91 8.13 -2.39 -0.02 0.89 16 36 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 37 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 38 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H 0.26 15.37 8.31 -92.70 -0.77 14.60 16 40 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 41 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -66.46 328.16 1.72 -64.74 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.21 Total: 17.71 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 3.90 Total: -32.13 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -2.92 Total: -86.45 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: -1.49 Total: -10.74 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -66.46 1.72 -64.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309025361.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.131 kcal (2) G-P(sol) polarization free energy of solvation -66.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds