Wall clock time and date at job start Sun Mar 29 2020 23:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47045 * 2 1 4 4 H 1.09004 * 109.47485 * 182.77179 * 3 2 1 5 5 C 1.50696 * 109.47267 * 62.76605 * 3 2 1 6 6 H 1.07996 * 120.00745 * 274.77787 * 5 3 2 7 7 C 1.37881 * 119.99871 * 94.77833 * 5 3 2 8 8 N 1.31512 * 120.00164 * 184.00083 * 7 5 3 9 9 Si 1.86806 * 119.99885 * 3.99658 * 7 5 3 10 10 H 1.48491 * 109.47227 * 87.09390 * 9 7 5 11 11 H 1.48505 * 109.46874 * 207.09484 * 9 7 5 12 12 H 1.48503 * 109.46904 * 327.09287 * 9 7 5 13 13 N 1.46902 * 109.46846 * 302.77035 * 3 2 1 14 14 C 1.46849 * 111.00231 * 296.68546 * 13 3 2 15 15 C 1.53033 * 109.52225 * 174.16363 * 14 13 3 16 16 C 1.53116 * 109.28252 * 59.18306 * 15 14 13 17 17 C 1.52997 * 109.52446 * 182.43669 * 16 15 14 18 18 O 1.42896 * 109.52611 * 62.24431 * 16 15 14 19 19 C 1.42906 * 113.99748 * 60.32134 * 18 16 15 20 20 C 1.53120 * 109.15874 * 302.34407 * 16 15 14 21 21 C 1.46849 * 111.00063 * 172.47636 * 13 3 2 22 22 H 1.09003 * 109.46808 * 184.08470 * 1 2 3 23 23 H 1.08997 * 109.47654 * 304.09103 * 1 2 3 24 24 H 1.09005 * 109.47390 * 64.09211 * 1 2 3 25 25 H 1.09001 * 109.47470 * 239.99970 * 2 1 3 26 26 H 1.09005 * 109.46929 * 119.99827 * 2 1 3 27 27 H 0.97003 * 120.00090 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.45985 * 294.17689 * 14 13 3 29 29 H 1.08998 * 109.46123 * 54.14231 * 14 13 3 30 30 H 1.08998 * 109.50269 * 299.23332 * 15 14 13 31 31 H 1.09007 * 109.53413 * 179.13756 * 15 14 13 32 32 H 1.08998 * 109.47493 * 179.67812 * 17 16 15 33 33 H 1.08999 * 109.47192 * 299.68105 * 17 16 15 34 34 H 1.09007 * 109.46777 * 59.68085 * 17 16 15 35 35 H 1.09000 * 109.47148 * 60.00071 * 19 18 16 36 36 H 1.08995 * 109.47023 * 180.02562 * 19 18 16 37 37 H 1.09001 * 109.46642 * 299.99592 * 19 18 16 38 38 H 1.09004 * 109.50065 * 297.71443 * 20 16 15 39 39 H 1.08999 * 109.53948 * 177.61687 * 20 16 15 40 40 H 1.09000 * 109.46258 * 305.85829 * 21 13 3 41 41 H 1.09004 * 109.46132 * 65.82943 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1289 1.4430 -0.0497 5 6 1.5944 2.1328 1.2633 6 1 0.6178 2.5912 1.3126 7 6 2.4337 2.1793 2.3562 8 7 2.0161 2.7120 3.4838 9 14 4.1639 1.4855 2.2354 10 1 5.0823 2.5326 1.7203 11 1 4.6167 1.0479 3.5803 12 1 4.1681 0.3244 1.3096 13 7 1.4964 2.1540 -1.1646 14 6 1.9745 1.5553 -2.4174 15 6 1.2772 2.2257 -3.6033 16 6 1.5795 3.7266 -3.5852 17 6 0.8358 4.4119 -4.7332 18 8 2.9856 3.9323 -3.7352 19 6 3.5217 3.4157 -4.9550 20 6 1.1157 4.3165 -2.2505 21 6 1.8176 3.5856 -1.1038 22 1 -0.3633 -1.0251 0.0732 23 1 -0.3634 0.5760 0.8510 24 1 -0.3634 0.4490 -0.9244 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.6067 2.7451 4.2526 28 1 3.0517 1.6993 -2.5008 29 1 1.7496 0.4888 -2.4192 30 1 0.2009 2.0702 -3.5279 31 1 1.6432 1.7920 -4.5340 32 1 1.0471 5.4811 -4.7161 33 1 1.1667 3.9913 -5.6828 34 1 -0.2363 4.2515 -4.6186 35 1 3.0337 3.9005 -5.8005 36 1 4.5933 3.6113 -4.9925 37 1 3.3471 2.3408 -5.0020 38 1 0.0369 4.1941 -2.1538 39 1 1.3663 5.3767 -2.2138 40 1 1.4788 3.9937 -0.1515 41 1 2.8956 3.7200 -1.1934 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309026476.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:39 Heat of formation + Delta-G solvation = -50.455235 kcal Electronic energy + Delta-G solvation = -19176.492932 eV Core-core repulsion = 16477.198203 eV Total energy + Delta-G solvation = -2699.294729 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.64630 -36.97202 -33.98277 -32.08767 -31.22173 -30.40766 -28.02941 -26.65864 -26.01070 -23.37283 -22.28294 -21.35582 -19.45272 -18.79166 -16.71797 -16.04556 -15.39636 -15.15987 -14.91862 -14.23907 -13.88231 -13.40406 -13.30343 -13.08820 -12.72364 -12.45919 -12.29897 -12.12792 -11.82681 -11.60432 -11.39375 -10.97702 -10.94163 -10.89956 -10.65504 -10.57094 -10.18410 -9.96415 -9.79766 -9.70416 -9.53675 -9.21548 -8.79063 -8.51965 -7.14871 -6.05146 -4.02358 3.29596 3.37998 3.40669 3.98060 4.43637 4.86702 4.94795 5.03576 5.16864 5.32052 5.37430 5.44143 5.59980 5.64473 5.73795 5.79337 5.95166 6.01371 6.07006 6.12158 6.15510 6.27736 6.33020 6.37147 6.41847 6.46632 6.49684 6.81393 6.84990 6.91838 7.11511 7.13546 7.31773 7.45306 7.47681 7.69655 8.12863 8.24910 8.72554 9.04518 9.59505 11.07590 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027576 B = 0.007989 C = 0.007546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.147278 B = 3503.861773 C = 3709.811925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 C 0.183 3.817 4 H -0.001 1.001 5 C -0.495 4.495 6 H 0.082 0.918 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.869 3.131 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.267 1.267 13 N -0.523 5.523 14 C 0.054 3.946 15 C -0.136 4.136 16 C 0.112 3.888 17 C -0.175 4.175 18 O -0.374 6.374 19 C 0.026 3.974 20 C -0.099 4.099 21 C 0.068 3.932 22 H 0.020 0.980 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.025 0.975 26 H 0.050 0.950 27 H 0.263 0.737 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.041 0.959 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.315 0.128 -15.440 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.145 4.145 3 C 0.076 3.924 4 H 0.017 0.983 5 C -0.533 4.533 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.697 3.303 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 N -0.248 5.248 14 C -0.075 4.075 15 C -0.174 4.174 16 C 0.072 3.928 17 C -0.232 4.232 18 O -0.293 6.293 19 C -0.071 4.071 20 C -0.137 4.137 21 C -0.059 4.059 22 H 0.039 0.961 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.060 0.940 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -0.660 0.214 -15.083 15.098 hybrid contribution 1.854 -0.477 -0.292 1.937 sum 1.194 -0.262 -15.375 15.423 Atomic orbital electron populations 1.21462 0.95895 0.98242 1.02555 1.21659 0.96828 0.97738 0.98297 1.19722 0.92049 0.91191 0.89433 0.98344 1.20849 1.03482 1.34940 0.94059 0.89967 1.24974 0.97809 0.94840 0.95367 1.69887 1.36321 1.45459 1.01972 0.86982 0.86000 0.80169 0.77146 1.20426 1.21532 1.19140 1.62019 1.59558 1.02228 1.01029 1.21979 0.96360 0.98469 0.90694 1.22146 1.02034 0.95176 0.98027 1.21632 0.80820 0.94483 0.95826 1.22393 1.01128 1.01203 0.98479 1.88009 1.22554 1.80025 1.38707 1.22711 0.98861 0.98102 0.87377 1.21653 1.00781 0.99058 0.92220 1.21848 0.97080 0.88606 0.98414 0.96052 0.91573 0.93139 0.95592 0.93126 0.92720 0.95840 0.91390 0.90480 0.92382 0.92071 0.92737 0.91491 0.94302 0.90337 0.94022 0.90231 0.91732 0.88656 0.95705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 9.52 37.16 0.35 -2.14 16 2 C -0.11 -2.31 5.34 -26.73 -0.14 -2.45 16 3 C 0.18 4.31 1.39 -68.87 -0.10 4.22 16 4 H 0.00 -0.03 5.30 -51.93 -0.28 -0.30 16 5 C -0.49 -13.41 6.12 -34.44 -0.21 -13.63 16 6 H 0.08 2.44 7.81 -52.49 -0.41 2.03 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 9 Si 0.87 21.77 27.03 -169.99 -4.60 17.17 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.27 -6.47 6.76 56.52 0.38 -6.09 16 13 N -0.52 -10.84 3.71 -228.08 -0.85 -11.69 16 14 C 0.05 0.96 5.13 -3.83 -0.02 0.94 16 15 C -0.14 -1.99 4.59 -26.65 -0.12 -2.11 16 16 C 0.11 1.64 0.72 -90.50 -0.06 1.57 16 17 C -0.17 -2.04 8.26 37.16 0.31 -1.73 16 18 O -0.37 -5.94 9.20 -35.23 -0.32 -6.27 16 19 C 0.03 0.32 10.22 101.05 1.03 1.35 16 20 C -0.10 -1.63 5.11 -26.65 -0.14 -1.77 16 21 C 0.07 1.40 5.05 -3.83 -0.02 1.39 16 22 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 23 H 0.07 1.48 7.09 -51.93 -0.37 1.11 16 24 H 0.05 0.97 7.67 -51.93 -0.40 0.57 16 25 H 0.03 0.50 6.49 -51.93 -0.34 0.17 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.02 0.45 7.76 -51.93 -0.40 0.05 16 29 H 0.07 1.18 6.17 -51.93 -0.32 0.86 16 30 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.74 6.44 -51.92 -0.33 0.41 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.57 6.54 -51.93 -0.34 0.23 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.04 0.40 6.42 -51.93 -0.33 0.07 16 36 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.48 6.38 -51.93 -0.33 0.15 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.10 2.19 6.57 -51.93 -0.34 1.85 16 41 H 0.02 0.55 7.76 -51.93 -0.40 0.14 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -29.28 303.64 -6.76 -36.05 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -7.13 Total: -1.20 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: 0.78 Total: -12.43 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: -0.07 Total: -37.91 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.32 Total: -6.27 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.60 Total: 17.17 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.28 -6.76 -36.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309026476.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.406 kcal (2) G-P(sol) polarization free energy of solvation -29.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds