Wall clock time and date at job start Sun Mar 29 2020 23:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 N 1.46901 * 109.46769 * 294.99558 * 3 2 1 14 14 C 1.46848 * 111.00085 * 299.21140 * 13 3 2 15 15 C 1.53045 * 109.52080 * 174.16148 * 14 13 3 16 16 C 1.53119 * 109.27750 * 59.18006 * 15 14 13 17 17 C 1.53001 * 109.52157 * 182.43905 * 16 15 14 18 18 O 1.42903 * 109.52226 * 62.24803 * 16 15 14 19 19 C 1.42902 * 113.99913 * 60.32095 * 18 16 15 20 20 C 1.53118 * 109.16239 * 302.34539 * 16 15 14 21 21 C 1.46849 * 110.99888 * 174.99934 * 13 3 2 22 22 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 24 24 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 25 25 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 26 26 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 27 27 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.46052 * 294.17636 * 14 13 3 29 29 H 1.08999 * 109.45965 * 54.15035 * 14 13 3 30 30 H 1.08997 * 109.50429 * 299.23932 * 15 14 13 31 31 H 1.08993 * 109.49973 * 179.12007 * 15 14 13 32 32 H 1.08999 * 109.47204 * 179.68133 * 17 16 15 33 33 H 1.08997 * 109.47194 * 299.68058 * 17 16 15 34 34 H 1.08998 * 109.46952 * 59.68196 * 17 16 15 35 35 H 1.08991 * 109.47043 * 179.97438 * 19 18 16 36 36 H 1.09002 * 109.46762 * 299.99588 * 19 18 16 37 37 H 1.09000 * 109.47207 * 59.99406 * 19 18 16 38 38 H 1.09010 * 109.50433 * 297.71636 * 20 16 15 39 39 H 1.08999 * 109.53942 * 177.62029 * 20 16 15 40 40 H 1.08999 * 109.46330 * 305.86208 * 21 13 3 41 41 H 1.09004 * 109.46272 * 65.83559 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 7 1.6514 2.0992 -1.2553 14 6 2.2356 1.4096 -2.4127 15 6 1.6948 2.0290 -3.7035 16 6 2.0525 3.5174 -3.7385 17 6 1.4622 4.1557 -4.9975 18 8 3.4737 3.6669 -3.7472 19 6 4.1152 3.0594 -4.8703 20 6 1.4735 4.2028 -2.4978 21 6 2.0206 3.5204 -1.2420 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8293 -0.0608 2.9500 28 1 3.3204 1.5125 -2.3872 29 1 1.9701 0.3530 -2.3780 30 1 0.6114 1.9143 -3.7362 31 1 2.1405 1.5273 -4.5624 32 1 1.7126 5.2163 -5.0188 33 1 1.8750 3.6672 -5.8802 34 1 0.3786 4.0382 -4.9906 35 1 5.1915 3.2176 -4.8033 36 1 3.9043 1.9900 -4.8746 37 1 3.7390 3.5076 -5.7899 38 1 0.3865 4.1222 -2.5114 39 1 1.7604 5.2544 -2.4949 40 1 1.5991 3.9969 -0.3568 41 1 3.1064 3.6135 -1.2221 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309026477.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:41 Heat of formation + Delta-G solvation = -51.562452 kcal Electronic energy + Delta-G solvation = -19227.641816 eV Core-core repulsion = 16528.299075 eV Total energy + Delta-G solvation = -2699.342741 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.53479 -36.80811 -33.87761 -31.93796 -30.97504 -30.22488 -27.94041 -26.57277 -25.60264 -22.94973 -22.60855 -21.17433 -19.37270 -18.80580 -16.52765 -15.50989 -15.26219 -15.03601 -14.94012 -14.14966 -14.00305 -13.39679 -13.08243 -12.78082 -12.64977 -12.24450 -12.03986 -11.79007 -11.69232 -11.42466 -11.23750 -11.03611 -10.93810 -10.73046 -10.54410 -10.45269 -10.29993 -9.86197 -9.61791 -9.52470 -9.44366 -8.99568 -8.95492 -8.28722 -6.99026 -5.91326 -4.04028 3.31145 3.38010 3.42064 4.09295 4.45922 5.00777 5.11946 5.16333 5.27926 5.32686 5.48220 5.59838 5.68426 5.75764 5.87223 5.92782 6.01883 6.13267 6.18255 6.23645 6.35513 6.42142 6.43435 6.51018 6.64848 6.69769 6.77390 6.94620 7.06389 7.15890 7.25559 7.41989 7.59184 7.70391 7.83541 8.07600 8.25783 8.44059 8.56920 9.07365 9.63109 11.07332 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023249 B = 0.008878 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.083610 B = 3152.983699 C = 3857.301667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.537 4.537 6 H 0.058 0.942 7 C 0.066 3.934 8 N -0.888 5.888 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.534 5.534 14 C 0.065 3.935 15 C -0.140 4.140 16 C 0.114 3.886 17 C -0.175 4.175 18 O -0.371 6.371 19 C 0.027 3.973 20 C -0.099 4.099 21 C 0.066 3.934 22 H 0.024 0.976 23 H 0.039 0.961 24 H 0.047 0.953 25 H 0.032 0.968 26 H 0.092 0.908 27 H 0.260 0.740 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.043 0.957 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.430 4.317 -11.726 12.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.577 4.577 6 H 0.076 0.924 7 C -0.135 4.135 8 N -0.527 5.527 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.258 5.258 14 C -0.063 4.063 15 C -0.178 4.178 16 C 0.074 3.926 17 C -0.232 4.232 18 O -0.290 6.290 19 C -0.069 4.069 20 C -0.137 4.137 21 C -0.063 4.063 22 H 0.043 0.957 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.110 0.890 27 H 0.070 0.930 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.835 4.290 -11.434 12.800 hybrid contribution 1.906 -0.177 -0.050 1.915 sum -1.928 4.113 -11.483 12.349 Atomic orbital electron populations 1.21707 0.98907 0.98297 1.00570 1.21634 0.92208 0.99373 1.01898 1.19247 0.93027 0.91012 0.85915 0.94482 1.21794 0.92986 1.37515 1.05356 0.92393 1.24910 0.97665 0.95192 0.95770 1.69883 1.34652 1.38688 1.09456 0.86700 0.86483 0.77429 0.78019 1.20783 1.21315 1.20085 1.62422 1.58084 1.01220 1.04078 1.21799 0.97727 0.97699 0.89097 1.22227 1.01708 0.95164 0.98715 1.21559 0.80910 0.95026 0.95058 1.22402 1.01480 1.01183 0.98164 1.88011 1.19182 1.76983 1.44841 1.22703 0.97711 0.97422 0.89107 1.21622 0.99953 0.98490 0.93595 1.21757 0.99215 0.89979 0.95328 0.95720 0.94223 0.93419 0.94900 0.89008 0.93036 0.94020 0.91438 0.91053 0.92504 0.92235 0.92683 0.91670 0.90322 0.93837 0.94534 0.90683 0.91997 0.92079 0.93667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.80 37.16 0.36 -2.46 16 2 C -0.11 -2.69 5.06 -26.73 -0.14 -2.83 16 3 C 0.21 5.33 1.75 -68.86 -0.12 5.21 16 4 H 0.04 1.03 8.08 -51.93 -0.42 0.61 16 5 C -0.54 -14.60 7.19 -34.44 -0.25 -14.85 16 6 H 0.06 1.62 5.84 -52.49 -0.31 1.32 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -25.24 11.30 55.43 0.63 -24.62 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.53 -11.36 4.10 -228.07 -0.93 -12.30 16 14 C 0.07 1.30 4.67 -3.83 -0.02 1.28 16 15 C -0.14 -2.23 4.59 -26.65 -0.12 -2.35 16 16 C 0.11 1.75 0.72 -90.50 -0.06 1.68 16 17 C -0.17 -2.13 8.26 37.16 0.31 -1.82 16 18 O -0.37 -6.32 9.20 -35.23 -0.32 -6.65 16 19 C 0.03 0.37 10.22 101.05 1.03 1.40 16 20 C -0.10 -1.60 5.11 -26.65 -0.14 -1.73 16 21 C 0.07 1.33 4.98 -3.83 -0.02 1.31 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.93 7.75 -51.93 -0.40 0.53 16 25 H 0.03 0.77 6.05 -51.93 -0.31 0.45 16 26 H 0.09 2.45 5.95 -51.93 -0.31 2.15 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 28 H 0.04 0.94 6.24 -51.93 -0.32 0.61 16 29 H 0.07 1.38 5.93 -51.93 -0.31 1.07 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.61 6.54 -51.93 -0.34 0.27 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.04 0.59 6.38 -51.93 -0.33 0.25 16 37 H 0.04 0.42 6.42 -51.93 -0.33 0.08 16 38 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 41 H 0.05 1.03 6.58 -51.93 -0.34 0.69 16 LS Contribution 302.82 15.07 4.56 4.56 Total: -1.00 -28.29 302.82 -7.34 -35.64 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -7.00 Total: 0.20 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 0.75 Total: -13.42 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: -0.31 Total: -36.91 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.32 Total: -6.65 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.29 -7.34 -35.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309026477.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.925 kcal (2) G-P(sol) polarization free energy of solvation -28.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds