Wall clock time and date at job start Sun Mar 29 2020 23:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47147 * 90.00197 * 9 7 5 11 11 H 1.48499 * 109.46797 * 209.99607 * 9 7 5 12 12 H 1.48500 * 109.47032 * 329.99738 * 9 7 5 13 13 N 1.46901 * 109.46769 * 294.99558 * 3 2 1 14 14 C 1.46848 * 111.00085 * 299.21140 * 13 3 2 15 15 C 1.53045 * 109.52080 * 174.16148 * 14 13 3 16 16 C 1.53119 * 109.27750 * 59.18006 * 15 14 13 17 17 C 1.53001 * 109.52157 * 182.43905 * 16 15 14 18 18 O 1.42903 * 109.52226 * 62.24803 * 16 15 14 19 19 C 1.42902 * 113.99913 * 60.32095 * 18 16 15 20 20 C 1.53118 * 109.16239 * 302.34539 * 16 15 14 21 21 C 1.46849 * 110.99888 * 174.99934 * 13 3 2 22 22 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 24 24 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 25 25 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 26 26 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 27 27 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.46052 * 294.17636 * 14 13 3 29 29 H 1.08999 * 109.45965 * 54.15035 * 14 13 3 30 30 H 1.08997 * 109.50429 * 299.23932 * 15 14 13 31 31 H 1.08993 * 109.49973 * 179.12007 * 15 14 13 32 32 H 1.08999 * 109.47204 * 179.68133 * 17 16 15 33 33 H 1.08997 * 109.47194 * 299.68058 * 17 16 15 34 34 H 1.08998 * 109.46952 * 59.68196 * 17 16 15 35 35 H 1.08991 * 109.47043 * 179.97438 * 19 18 16 36 36 H 1.09002 * 109.46762 * 299.99588 * 19 18 16 37 37 H 1.09000 * 109.47207 * 59.99406 * 19 18 16 38 38 H 1.09010 * 109.50433 * 297.71636 * 20 16 15 39 39 H 1.08999 * 109.53942 * 177.62029 * 20 16 15 40 40 H 1.08999 * 109.46330 * 305.86208 * 21 13 3 41 41 H 1.09004 * 109.46272 * 65.83559 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4390 -0.3107 2.1547 12 1 6.6131 0.8396 0.0270 13 7 1.6514 2.0992 -1.2553 14 6 2.2356 1.4096 -2.4127 15 6 1.6948 2.0290 -3.7035 16 6 2.0525 3.5174 -3.7385 17 6 1.4622 4.1557 -4.9975 18 8 3.4737 3.6669 -3.7472 19 6 4.1152 3.0594 -4.8703 20 6 1.4735 4.2028 -2.4978 21 6 2.0206 3.5204 -1.2420 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8293 -0.0608 2.9500 28 1 3.3204 1.5125 -2.3872 29 1 1.9701 0.3530 -2.3780 30 1 0.6114 1.9143 -3.7362 31 1 2.1405 1.5273 -4.5624 32 1 1.7126 5.2163 -5.0188 33 1 1.8750 3.6672 -5.8802 34 1 0.3786 4.0382 -4.9906 35 1 5.1915 3.2176 -4.8033 36 1 3.9043 1.9900 -4.8746 37 1 3.7390 3.5076 -5.7899 38 1 0.3865 4.1222 -2.5114 39 1 1.7604 5.2544 -2.4949 40 1 1.5991 3.9969 -0.3568 41 1 3.1064 3.6135 -1.2221 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309026477.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:00:41 Heat of formation + Delta-G solvation = -69.202723 kcal Electronic energy + Delta-G solvation = -19228.406755 eV Core-core repulsion = 16528.299075 eV Total energy + Delta-G solvation = -2700.107681 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89527 -38.42328 -35.52269 -33.79209 -32.56609 -31.69964 -29.42232 -27.85229 -27.26720 -24.78759 -24.10512 -22.69707 -20.99396 -20.41369 -18.41671 -17.23123 -16.69483 -16.38249 -16.25634 -15.91300 -15.57177 -15.06856 -14.66393 -14.32137 -14.04850 -13.65739 -13.36965 -13.24467 -13.16141 -12.97563 -12.89430 -12.71292 -12.51651 -12.43310 -12.17224 -11.96069 -11.93482 -11.59949 -11.53473 -11.14003 -11.04422 -10.81432 -10.43125 -10.23713 -8.86868 -8.01601 -6.24051 1.33818 1.35606 1.44905 2.39383 2.96429 3.14959 3.50371 3.84300 3.93150 4.06472 4.42078 4.49454 4.51837 4.56745 4.66335 4.68930 4.76091 4.76409 4.81332 4.82356 4.88064 4.92391 5.02143 5.06308 5.13595 5.23781 5.30096 5.34659 5.35712 5.42619 5.47180 5.54551 5.66079 5.81911 6.09301 6.25375 6.43206 6.46951 6.73962 6.98352 7.46117 8.92121 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.023249 B = 0.008878 C = 0.007257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.083610 B = 3152.983699 C = 3857.301667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.545 4.545 6 H 0.043 0.957 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.942 3.058 10 H -0.279 1.279 11 H -0.279 1.279 12 H -0.276 1.276 13 N -0.525 5.525 14 C 0.070 3.930 15 C -0.132 4.132 16 C 0.109 3.891 17 C -0.166 4.166 18 O -0.403 6.403 19 C 0.023 3.977 20 C -0.093 4.093 21 C 0.067 3.933 22 H 0.046 0.954 23 H 0.032 0.968 24 H 0.059 0.941 25 H 0.032 0.968 26 H 0.061 0.939 27 H 0.261 0.739 28 H 0.009 0.991 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.050 0.950 41 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.146 4.713 -13.864 15.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.146 4.146 3 C 0.112 3.888 4 H 0.020 0.980 5 C -0.585 4.585 6 H 0.061 0.939 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.205 1.205 12 H -0.201 1.201 13 N -0.249 5.249 14 C -0.059 4.059 15 C -0.170 4.170 16 C 0.070 3.930 17 C -0.223 4.223 18 O -0.323 6.323 19 C -0.073 4.073 20 C -0.130 4.130 21 C -0.061 4.061 22 H 0.065 0.935 23 H 0.051 0.949 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.027 0.973 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -4.553 4.690 -13.587 15.078 hybrid contribution 2.155 -0.289 0.630 2.264 sum -2.398 4.401 -12.957 13.893 Atomic orbital electron populations 1.21562 0.96049 0.99823 1.00768 1.21466 0.94709 0.98081 1.00295 1.19033 0.91556 0.91587 0.86630 0.98038 1.21960 0.94328 1.37177 1.04990 0.93901 1.25579 1.01560 0.95103 0.95633 1.69998 1.36051 1.39186 1.09774 0.85802 0.81866 0.77594 0.77841 1.20506 1.20481 1.20107 1.62406 1.57610 1.01730 1.03131 1.21772 0.95886 0.97616 0.90591 1.22185 1.02446 0.95709 0.96643 1.21653 0.80567 0.94551 0.96195 1.22304 1.02282 1.01256 0.96447 1.87977 1.20246 1.77485 1.46633 1.22853 0.97960 0.97286 0.89222 1.21600 1.00834 0.98739 0.91842 1.21753 0.97206 0.89639 0.97526 0.93518 0.94889 0.92238 0.94924 0.92062 0.92964 0.97265 0.92231 0.89581 0.90549 0.91663 0.91305 0.90055 0.90001 0.94129 0.91886 0.88903 0.90762 0.93130 0.97132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.01 9.80 71.98 0.71 -4.30 16 2 C -0.11 -5.19 5.06 30.60 0.15 -5.04 16 3 C 0.22 11.27 1.75 44.17 0.08 11.34 16 4 H 0.00 0.10 8.08 -2.39 -0.02 0.08 16 5 C -0.55 -30.72 7.19 25.60 0.18 -30.54 16 6 H 0.04 2.51 5.84 -2.91 -0.02 2.49 16 7 C 0.02 1.18 5.29 84.65 0.45 1.62 16 8 N -0.91 -53.12 11.30 21.45 0.24 -52.87 16 9 Si 0.94 45.24 29.54 68.60 2.03 47.27 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 13 N -0.52 -22.58 4.10 -875.49 -3.59 -26.17 16 14 C 0.07 2.77 4.67 86.33 0.40 3.17 16 15 C -0.13 -3.89 4.59 30.65 0.14 -3.75 16 16 C 0.11 3.09 0.72 -10.71 -0.01 3.08 16 17 C -0.17 -3.34 8.26 71.98 0.59 -2.75 16 18 O -0.40 -13.24 9.20 -148.98 -1.37 -14.61 16 19 C 0.02 0.57 10.22 113.37 1.16 1.73 16 20 C -0.09 -2.84 5.11 30.64 0.16 -2.68 16 21 C 0.07 2.76 4.98 86.32 0.43 3.19 16 22 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 23 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.06 2.23 7.75 -2.39 -0.02 2.21 16 25 H 0.03 1.55 6.05 -2.39 -0.01 1.53 16 26 H 0.06 3.36 5.95 -2.39 -0.01 3.35 16 27 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 28 H 0.01 0.42 6.24 -2.39 -0.01 0.40 16 29 H 0.06 2.42 5.93 -2.39 -0.01 2.41 16 30 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.08 1.97 6.44 -2.39 -0.02 1.96 16 32 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.21 6.54 -2.39 -0.02 1.20 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.04 1.02 6.38 -2.39 -0.02 1.01 16 37 H 0.06 1.23 6.42 -2.39 -0.02 1.22 16 38 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 39 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.05 2.11 8.08 -2.39 -0.02 2.10 16 41 H 0.01 0.49 6.58 -2.39 -0.02 0.48 16 Total: -1.00 -62.71 302.82 2.74 -59.97 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.99 Total: 11.33 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: 4.45 Total: -24.91 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -3.34 Total: -79.04 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -1.37 Total: -14.61 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -62.71 2.74 -59.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309026477.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.237 kcal (2) G-P(sol) polarization free energy of solvation -62.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds