Wall clock time and date at job start Sun Mar 29 2020 23:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47224 * 2 1 4 4 C 1.42895 * 114.00420 * 179.97438 * 3 2 1 5 5 C 1.53778 * 113.69093 * 110.93435 * 4 3 2 6 6 C 1.53776 * 87.08232 * 89.13315 * 5 4 3 7 7 C 1.52994 * 113.69413 * 139.99361 * 6 5 4 8 8 N 1.46907 * 109.47382 * 87.45990 * 7 6 5 9 9 C 1.46898 * 111.00144 * 175.55716 * 8 7 6 10 10 H 1.09001 * 109.46605 * 325.94587 * 9 8 7 11 11 C 1.50706 * 109.46817 * 205.94878 * 9 8 7 12 12 H 1.07994 * 120.00462 * 359.97438 * 11 9 8 13 13 C 1.37874 * 119.99586 * 179.97438 * 11 9 8 14 14 N 1.31517 * 119.99798 * 179.97438 * 13 11 9 15 15 Si 1.86800 * 120.00419 * 359.97438 * 13 11 9 16 16 H 1.48501 * 109.47037 * 89.99909 * 15 13 11 17 17 H 1.48500 * 109.47528 * 209.99660 * 15 13 11 18 18 H 1.48496 * 109.47174 * 330.00215 * 15 13 11 19 19 C 1.52993 * 109.47365 * 85.94862 * 9 8 7 20 20 C 1.52995 * 109.47284 * 59.24492 * 19 9 8 21 21 C 1.53776 * 87.08403 * 25.43051 * 6 5 4 22 22 H 1.09001 * 109.46700 * 60.00508 * 1 2 3 23 23 H 1.08994 * 109.47306 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47462 * 300.00448 * 1 2 3 25 25 H 1.08995 * 109.47462 * 239.99551 * 2 1 3 26 26 H 1.09001 * 109.46700 * 119.99492 * 2 1 3 27 27 H 1.09002 * 112.84802 * 339.66707 * 4 3 2 28 28 H 1.09003 * 113.61139 * 203.68003 * 5 4 3 29 29 H 1.08994 * 113.61764 * 334.57563 * 5 4 3 30 30 H 1.09006 * 113.61072 * 270.88227 * 6 5 4 31 31 H 1.09004 * 109.47327 * 207.45959 * 7 6 5 32 32 H 1.08999 * 109.46816 * 327.46370 * 7 6 5 33 33 H 1.00900 * 110.99578 * 51.59849 * 8 7 6 34 34 H 0.97003 * 119.99917 * 179.97438 * 14 13 11 35 35 H 1.08996 * 109.47579 * 179.24877 * 19 9 8 36 36 H 1.09006 * 109.46668 * 299.24391 * 19 9 8 37 37 H 1.08995 * 109.47400 * 175.56216 * 20 19 9 38 38 H 1.09003 * 109.47238 * 295.56169 * 20 19 9 39 39 H 1.08998 * 109.47337 * 55.55788 * 20 19 9 40 40 H 1.08997 * 113.61694 * 220.02341 * 21 6 5 41 41 H 1.09005 * 113.61438 * 89.11704 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4602 0.0006 5 6 4.0076 2.0103 -1.3145 6 6 3.8432 3.4138 -0.7079 7 6 5.0057 4.3583 -1.0195 8 7 4.7567 5.0361 -2.2988 9 6 5.8014 6.0297 -2.5803 10 1 6.1383 6.4775 -1.6453 11 6 5.2444 7.1033 -3.4794 12 1 4.2173 7.0523 -3.8091 13 6 6.0462 8.1505 -3.8811 14 7 5.5603 9.0871 -4.6662 15 14 7.8226 8.2391 -3.3103 16 1 8.6909 7.5273 -4.2823 17 1 8.2431 9.6604 -3.2194 18 1 7.9462 7.5999 -1.9757 19 6 6.9820 5.3462 -3.2729 20 6 6.5052 4.7016 -4.5760 21 6 3.9468 2.7437 0.6723 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 3.9270 0.5547 0.3500 28 1 5.0462 1.7284 -1.4875 29 1 3.3696 1.8311 -2.1799 30 1 2.8692 3.8626 -0.9033 31 1 5.0935 5.1006 -0.2261 32 1 5.9310 3.7860 -1.0857 33 1 3.8413 5.4605 -2.3109 34 1 6.1243 9.8241 -4.9485 35 1 7.7515 6.0858 -3.4938 36 1 7.3932 4.5788 -2.6171 37 1 7.3594 4.2829 -5.1080 38 1 5.7936 3.9075 -4.3494 39 1 6.0228 5.4548 -5.1988 40 1 3.2597 3.1565 1.4109 41 1 4.9688 2.6622 1.0425 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309026548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:36 Heat of formation + Delta-G solvation = -32.097413 kcal Electronic energy + Delta-G solvation = -17758.341054 eV Core-core repulsion = 15059.842380 eV Total energy + Delta-G solvation = -2698.498674 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.57875 -36.93987 -35.77355 -32.42560 -31.36492 -30.76453 -27.49966 -25.63187 -25.24798 -23.05444 -22.97699 -21.88591 -19.50271 -19.15048 -16.76697 -16.32879 -15.74482 -15.57620 -15.00424 -14.58011 -14.04257 -13.68538 -13.38196 -13.18615 -12.87235 -12.72057 -12.51026 -12.16504 -12.04678 -11.86584 -11.57792 -11.27266 -11.10232 -10.80408 -10.58506 -10.48135 -10.23306 -10.09799 -10.03721 -9.74034 -9.44177 -9.25163 -8.89009 -8.53647 -7.36219 -6.06716 -4.04965 3.29319 3.38428 3.40423 3.50108 4.41569 4.62465 4.72717 4.84939 4.93163 4.98857 5.08469 5.18707 5.26514 5.29089 5.48014 5.60366 5.71441 5.79534 5.88562 5.91121 5.93908 6.03557 6.12337 6.22949 6.24951 6.30663 6.43385 6.51741 6.67979 6.79462 6.96688 7.14989 7.23519 7.30593 7.52515 7.66382 8.01357 8.42871 8.67475 8.98794 9.56334 11.06225 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.042882 B = 0.004482 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.792704 B = 6246.389740 C = 6340.265746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.367 6.367 4 C 0.060 3.940 5 C -0.142 4.142 6 C -0.095 4.095 7 C 0.067 3.933 8 N -0.674 5.674 9 C 0.184 3.816 10 H -0.001 1.001 11 C -0.512 4.512 12 H 0.078 0.922 13 C 0.072 3.928 14 N -0.899 5.899 15 Si 0.887 3.113 16 H -0.277 1.277 17 H -0.298 1.298 18 H -0.269 1.269 19 C -0.111 4.111 20 C -0.124 4.124 21 C -0.137 4.137 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.338 0.662 34 H 0.263 0.737 35 H 0.039 0.961 36 H 0.029 0.971 37 H 0.018 0.982 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.040 -16.997 9.908 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.286 6.286 4 C 0.002 3.998 5 C -0.180 4.180 6 C -0.114 4.114 7 C -0.063 4.063 8 N -0.305 5.305 9 C 0.075 3.925 10 H 0.016 0.984 11 C -0.550 4.550 12 H 0.096 0.904 13 C -0.130 4.130 14 N -0.537 5.537 15 Si 0.718 3.282 16 H -0.204 1.204 17 H -0.226 1.226 18 H -0.195 1.195 19 C -0.149 4.149 20 C -0.181 4.181 21 C -0.175 4.175 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.156 0.844 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.829 -17.156 9.431 19.948 hybrid contribution 1.045 0.640 0.824 1.477 sum -2.784 -16.516 10.255 19.639 Atomic orbital electron populations 1.21744 0.93861 1.02057 1.03240 1.22486 0.95478 0.84129 0.99835 1.87898 1.20094 1.25924 1.94651 1.23101 0.81230 0.97537 0.97951 1.23399 1.01090 0.96454 0.97022 1.22449 0.99658 0.94783 0.94477 1.21971 0.96901 0.95975 0.91464 1.60484 1.06360 1.33913 1.29750 1.19580 0.89317 0.88981 0.94644 0.98379 1.21058 0.99739 1.04832 1.29381 0.90383 1.24902 0.98183 0.95364 0.94541 1.69895 1.36567 1.12363 1.34919 0.86854 0.85923 0.75688 0.79750 1.20436 1.22625 1.19454 1.21726 0.98016 0.97688 0.97498 1.21459 0.98840 1.00817 0.97026 1.23235 1.01038 0.95547 0.97694 0.91701 0.91279 0.91929 0.93419 0.93662 0.91526 0.89516 0.90958 0.89053 0.96187 0.92019 0.84372 0.92671 0.94248 0.95249 0.96242 0.92694 0.91401 0.90956 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.28 37.16 0.38 -0.86 16 2 C 0.06 0.55 6.50 37.16 0.24 0.79 16 3 O -0.37 -4.65 10.28 -35.23 -0.36 -5.01 16 4 C 0.06 0.70 4.36 -25.92 -0.11 0.59 16 5 C -0.14 -1.86 7.47 -25.92 -0.19 -2.05 16 6 C -0.10 -1.36 3.81 -89.82 -0.34 -1.71 16 7 C 0.07 1.13 5.37 -3.82 -0.02 1.11 16 8 N -0.67 -13.72 5.62 -107.95 -0.61 -14.33 16 9 C 0.18 4.37 1.89 -68.87 -0.13 4.24 16 10 H 0.00 -0.03 6.77 -51.93 -0.35 -0.38 16 11 C -0.51 -14.21 7.87 -34.44 -0.27 -14.48 16 12 H 0.08 2.34 7.85 -52.49 -0.41 1.93 16 13 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 14 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 15 Si 0.89 22.32 24.38 -169.99 -4.14 18.17 16 16 H -0.28 -6.84 6.86 56.52 0.39 -6.45 16 17 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 18 H -0.27 -6.56 6.53 56.52 0.37 -6.19 16 19 C -0.11 -2.51 5.29 -26.74 -0.14 -2.65 16 20 C -0.12 -2.67 9.52 37.16 0.35 -2.31 16 21 C -0.14 -1.65 7.47 -25.92 -0.19 -1.85 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.66 7.88 -51.93 -0.41 0.25 16 28 H 0.09 1.09 7.90 -51.93 -0.41 0.68 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.09 1.42 8.08 -51.93 -0.42 1.00 16 31 H 0.02 0.35 7.94 -51.93 -0.41 -0.06 16 32 H 0.06 1.03 7.33 -51.93 -0.38 0.65 16 33 H 0.34 7.01 8.10 -39.29 -0.32 6.69 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.04 0.94 3.26 -51.93 -0.17 0.77 16 36 H 0.03 0.60 7.62 -51.93 -0.40 0.20 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 1.12 7.73 -51.93 -0.40 0.72 16 39 H 0.07 1.63 7.09 -51.93 -0.37 1.26 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 LS Contribution 319.13 15.07 4.81 4.81 Total: -1.00 -29.80 319.13 -7.49 -37.29 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.43 Total: 2.93 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.53 Total: -17.20 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.17 Total: -40.99 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.36 Total: -5.01 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.14 Total: 18.17 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.80 -7.49 -37.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309026548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.193 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds