Wall clock time and date at job start Sun Mar 29 2020 23:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47224 * 2 1 4 4 C 1.42895 * 114.00420 * 179.97438 * 3 2 1 5 5 C 1.53778 * 113.69093 * 110.93435 * 4 3 2 6 6 C 1.53776 * 87.08232 * 89.13315 * 5 4 3 7 7 C 1.52994 * 113.69413 * 139.99361 * 6 5 4 8 8 N 1.46907 * 109.47382 * 87.45990 * 7 6 5 9 9 C 1.46898 * 111.00144 * 175.55716 * 8 7 6 10 10 H 1.09001 * 109.46605 * 325.94587 * 9 8 7 11 11 C 1.50706 * 109.46817 * 205.94878 * 9 8 7 12 12 H 1.07994 * 120.00462 * 359.97438 * 11 9 8 13 13 C 1.37874 * 119.99586 * 179.97438 * 11 9 8 14 14 N 1.31517 * 119.99798 * 179.97438 * 13 11 9 15 15 Si 1.86800 * 120.00419 * 359.97438 * 13 11 9 16 16 H 1.48501 * 109.47037 * 89.99909 * 15 13 11 17 17 H 1.48500 * 109.47528 * 209.99660 * 15 13 11 18 18 H 1.48496 * 109.47174 * 330.00215 * 15 13 11 19 19 C 1.52993 * 109.47365 * 85.94862 * 9 8 7 20 20 C 1.52995 * 109.47284 * 59.24492 * 19 9 8 21 21 C 1.53776 * 87.08403 * 25.43051 * 6 5 4 22 22 H 1.09001 * 109.46700 * 60.00508 * 1 2 3 23 23 H 1.08994 * 109.47306 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47462 * 300.00448 * 1 2 3 25 25 H 1.08995 * 109.47462 * 239.99551 * 2 1 3 26 26 H 1.09001 * 109.46700 * 119.99492 * 2 1 3 27 27 H 1.09002 * 112.84802 * 339.66707 * 4 3 2 28 28 H 1.09003 * 113.61139 * 203.68003 * 5 4 3 29 29 H 1.08994 * 113.61764 * 334.57563 * 5 4 3 30 30 H 1.09006 * 113.61072 * 270.88227 * 6 5 4 31 31 H 1.09004 * 109.47327 * 207.45959 * 7 6 5 32 32 H 1.08999 * 109.46816 * 327.46370 * 7 6 5 33 33 H 1.00900 * 110.99578 * 51.59849 * 8 7 6 34 34 H 0.97003 * 119.99917 * 179.97438 * 14 13 11 35 35 H 1.08996 * 109.47579 * 179.24877 * 19 9 8 36 36 H 1.09006 * 109.46668 * 299.24391 * 19 9 8 37 37 H 1.08995 * 109.47400 * 175.56216 * 20 19 9 38 38 H 1.09003 * 109.47238 * 295.56169 * 20 19 9 39 39 H 1.08998 * 109.47337 * 55.55788 * 20 19 9 40 40 H 1.08997 * 113.61694 * 220.02341 * 21 6 5 41 41 H 1.09005 * 113.61438 * 89.11704 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4308 1.4602 0.0006 5 6 4.0076 2.0103 -1.3145 6 6 3.8432 3.4138 -0.7079 7 6 5.0057 4.3583 -1.0195 8 7 4.7567 5.0361 -2.2988 9 6 5.8014 6.0297 -2.5803 10 1 6.1383 6.4775 -1.6453 11 6 5.2444 7.1033 -3.4794 12 1 4.2173 7.0523 -3.8091 13 6 6.0462 8.1505 -3.8811 14 7 5.5603 9.0871 -4.6662 15 14 7.8226 8.2391 -3.3103 16 1 8.6909 7.5273 -4.2823 17 1 8.2431 9.6604 -3.2194 18 1 7.9462 7.5999 -1.9757 19 6 6.9820 5.3462 -3.2729 20 6 6.5052 4.7016 -4.5760 21 6 3.9468 2.7437 0.6723 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8901 27 1 3.9270 0.5547 0.3500 28 1 5.0462 1.7284 -1.4875 29 1 3.3696 1.8311 -2.1799 30 1 2.8692 3.8626 -0.9033 31 1 5.0935 5.1006 -0.2261 32 1 5.9310 3.7860 -1.0857 33 1 3.8413 5.4605 -2.3109 34 1 6.1243 9.8241 -4.9485 35 1 7.7515 6.0858 -3.4938 36 1 7.3932 4.5788 -2.6171 37 1 7.3594 4.2829 -5.1080 38 1 5.7936 3.9075 -4.3494 39 1 6.0228 5.4548 -5.1988 40 1 3.2597 3.1565 1.4109 41 1 4.9688 2.6622 1.0425 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309026548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:36 Heat of formation + Delta-G solvation = -51.919553 kcal Electronic energy + Delta-G solvation = -17759.200607 eV Core-core repulsion = 15059.842380 eV Total energy + Delta-G solvation = -2699.358226 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57917 -38.37201 -37.06247 -34.36906 -32.99579 -31.68695 -29.23225 -26.95947 -26.50867 -24.93398 -23.69150 -23.13443 -21.13974 -20.40856 -18.59205 -17.54092 -17.22924 -16.54704 -16.22089 -15.92519 -15.60816 -15.23580 -14.94835 -14.71398 -14.43330 -13.89233 -13.66601 -13.40896 -13.16041 -13.01623 -12.92718 -12.68402 -12.46406 -12.30949 -12.12796 -12.06750 -11.83376 -11.54156 -11.35163 -11.18819 -11.01411 -10.84742 -10.64005 -10.31888 -9.03930 -8.29291 -6.31521 1.30067 1.33734 1.43848 2.31394 2.70260 3.06429 3.42811 3.76957 3.82501 3.94846 4.12657 4.22317 4.30809 4.38688 4.46235 4.48812 4.52666 4.65404 4.72284 4.74292 4.83766 4.87230 4.93643 4.97303 5.00388 5.05096 5.17608 5.22180 5.27384 5.35857 5.37519 5.43461 5.52361 5.65997 5.78037 6.04392 6.41611 6.54182 6.69757 6.86954 7.33988 8.87211 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.042882 B = 0.004482 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.792704 B = 6246.389740 C = 6340.265746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.393 6.393 4 C 0.066 3.934 5 C -0.140 4.140 6 C -0.100 4.100 7 C 0.070 3.930 8 N -0.674 5.674 9 C 0.188 3.812 10 H -0.010 1.010 11 C -0.510 4.510 12 H 0.039 0.961 13 C 0.017 3.983 14 N -0.947 5.947 15 Si 0.946 3.054 16 H -0.266 1.266 17 H -0.299 1.299 18 H -0.253 1.253 19 C -0.113 4.113 20 C -0.116 4.116 21 C -0.128 4.128 22 H 0.052 0.948 23 H 0.091 0.909 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.015 0.985 32 H 0.073 0.927 33 H 0.331 0.669 34 H 0.265 0.735 35 H 0.030 0.970 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.031 0.969 40 H 0.070 0.930 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 -19.414 11.467 22.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.312 6.312 4 C 0.009 3.991 5 C -0.178 4.178 6 C -0.119 4.119 7 C -0.059 4.059 8 N -0.304 5.304 9 C 0.079 3.921 10 H 0.007 0.993 11 C -0.548 4.548 12 H 0.057 0.943 13 C -0.181 4.181 14 N -0.587 5.587 15 Si 0.774 3.226 16 H -0.192 1.192 17 H -0.227 1.227 18 H -0.177 1.177 19 C -0.151 4.151 20 C -0.173 4.173 21 C -0.166 4.166 22 H 0.071 0.929 23 H 0.110 0.890 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.033 0.967 32 H 0.091 0.909 33 H 0.149 0.851 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.088 0.912 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.298 -19.605 11.004 22.599 hybrid contribution 0.434 1.357 0.327 1.462 sum -1.865 -18.248 11.331 21.560 Atomic orbital electron populations 1.21772 0.93241 1.03338 1.02455 1.22710 0.96102 0.82950 1.00872 1.87878 1.20682 1.27980 1.94690 1.23067 0.81116 0.98364 0.96601 1.23408 1.01593 0.95506 0.97307 1.22394 0.97597 0.94879 0.97033 1.22051 0.98491 0.95966 0.89399 1.60480 1.05154 1.32575 1.32195 1.19435 0.90612 0.88798 0.93287 0.99280 1.21290 0.98132 1.06129 1.29277 0.94324 1.25710 1.02645 0.95022 0.94726 1.70039 1.38386 1.13406 1.36891 0.85885 0.80741 0.75779 0.80218 1.19162 1.22718 1.17714 1.21706 0.96935 0.98149 0.98260 1.21354 0.99781 0.99937 0.96265 1.23228 1.02184 0.95138 0.96047 0.92897 0.88984 0.92288 0.92893 0.91987 0.88927 0.88430 0.92408 0.90985 0.96725 0.90895 0.85146 0.92605 0.95209 0.92269 0.93598 0.91888 0.94963 0.91169 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 10.28 71.98 0.74 -1.51 16 2 C 0.05 0.84 6.50 71.98 0.47 1.31 16 3 O -0.39 -9.33 10.28 -148.98 -1.53 -10.86 16 4 C 0.07 1.38 4.36 31.12 0.14 1.52 16 5 C -0.14 -3.40 7.47 31.12 0.23 -3.17 16 6 C -0.10 -2.75 3.81 -10.27 -0.04 -2.79 16 7 C 0.07 2.27 5.37 86.30 0.46 2.73 16 8 N -0.67 -27.17 5.62 -495.44 -2.79 -29.95 16 9 C 0.19 8.83 1.89 44.17 0.08 8.91 16 10 H -0.01 -0.50 6.77 -2.39 -0.02 -0.51 16 11 C -0.51 -28.99 7.87 25.60 0.20 -28.79 16 12 H 0.04 2.44 7.85 -2.91 -0.02 2.42 16 13 C 0.02 0.96 5.45 84.65 0.46 1.42 16 14 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 15 Si 0.95 45.65 24.38 68.60 1.67 47.32 16 16 H -0.27 -12.24 6.86 99.48 0.68 -11.56 16 17 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 18 H -0.25 -11.44 6.53 99.48 0.65 -10.79 16 19 C -0.11 -4.81 5.29 30.59 0.16 -4.65 16 20 C -0.12 -4.79 9.52 71.98 0.69 -4.10 16 21 C -0.13 -2.77 7.47 31.12 0.23 -2.54 16 22 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.09 1.48 7.88 -2.39 -0.02 1.46 16 28 H 0.10 2.15 7.90 -2.39 -0.02 2.13 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 2.25 8.08 -2.38 -0.02 2.23 16 31 H 0.01 0.49 7.94 -2.38 -0.02 0.47 16 32 H 0.07 2.21 7.33 -2.39 -0.02 2.19 16 33 H 0.33 14.09 8.10 -89.69 -0.73 13.36 16 34 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 35 H 0.03 1.34 3.26 -2.39 -0.01 1.33 16 36 H 0.06 2.19 7.62 -2.38 -0.02 2.17 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.06 2.46 7.73 -2.39 -0.02 2.44 16 39 H 0.03 1.53 7.09 -2.39 -0.02 1.51 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.11 1.95 8.10 -2.38 -0.02 1.93 16 Total: -1.00 -64.98 319.13 1.66 -63.32 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.17 Total: 20.97 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 3.83 Total: -31.65 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -2.49 Total: -89.11 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -1.53 Total: -10.86 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.67 Total: 47.32 kcal Total: -64.98 1.66 -63.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309026548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.404 kcal (2) G-P(sol) polarization free energy of solvation -64.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds