Wall clock time and date at job start Sun Mar 29 2020 23:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47039 * 2 1 4 4 C 1.42901 * 113.99674 * 179.97438 * 3 2 1 5 5 C 1.53788 * 113.61274 * 149.99937 * 4 3 2 6 6 C 1.53781 * 87.08233 * 89.19470 * 5 4 3 7 7 C 1.53002 * 113.61106 * 139.97932 * 6 5 4 8 8 N 1.46901 * 109.47048 * 176.53263 * 7 6 5 9 9 C 1.46894 * 111.00310 * 176.23112 * 8 7 6 10 10 H 1.09000 * 109.47147 * 33.89564 * 9 8 7 11 11 C 1.50699 * 109.47284 * 153.90015 * 9 8 7 12 12 H 1.07994 * 120.00193 * 0.02562 * 11 9 8 13 13 C 1.37878 * 119.99585 * 179.97438 * 11 9 8 14 14 N 1.31519 * 119.99496 * 179.97438 * 13 11 9 15 15 Si 1.86796 * 120.00597 * 0.02562 * 13 11 9 16 16 H 1.48495 * 109.47045 * 269.99759 * 15 13 11 17 17 H 1.48500 * 109.47064 * 29.99739 * 15 13 11 18 18 H 1.48499 * 109.47158 * 149.99520 * 15 13 11 19 19 C 1.53004 * 109.47156 * 273.90454 * 9 8 7 20 20 C 1.53004 * 109.46865 * 295.51158 * 19 9 8 21 21 C 1.53780 * 87.17153 * 25.39192 * 6 5 4 22 22 H 1.08996 * 109.47604 * 300.00317 * 1 2 3 23 23 H 1.08998 * 109.47340 * 60.00135 * 1 2 3 24 24 H 1.09004 * 109.47062 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46914 * 239.99412 * 2 1 3 26 26 H 1.08997 * 109.46826 * 119.99761 * 2 1 3 27 27 H 1.08997 * 112.85320 * 18.80331 * 4 3 2 28 28 H 1.09001 * 113.61399 * 334.64890 * 5 4 3 29 29 H 1.08996 * 113.61396 * 203.74793 * 5 4 3 30 30 H 1.08998 * 113.61781 * 270.80620 * 6 5 4 31 31 H 1.08997 * 109.46999 * 56.53336 * 7 6 5 32 32 H 1.09007 * 109.47262 * 296.52827 * 7 6 5 33 33 H 1.00909 * 110.99850 * 52.27740 * 8 7 6 34 34 H 0.96995 * 119.99943 * 180.02562 * 14 13 11 35 35 H 1.08995 * 109.47499 * 55.51130 * 19 9 8 36 36 H 1.08999 * 109.47131 * 175.51208 * 19 9 8 37 37 H 1.09001 * 109.47297 * 185.26240 * 20 19 9 38 38 H 1.09003 * 109.47017 * 305.26232 * 20 19 9 39 39 H 1.08997 * 109.47005 * 65.25872 * 20 19 9 40 40 H 1.09008 * 113.61943 * 89.15612 * 21 6 5 41 41 H 1.09004 * 113.61495 * 220.06000 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.9489 2.7251 -0.7040 6 6 3.8411 3.4323 0.6573 7 6 5.0039 4.3833 0.9477 8 7 4.7687 5.0686 2.2256 9 6 5.9081 5.9246 2.5816 10 1 6.3485 6.3390 1.6747 11 6 5.4352 7.0472 3.4688 12 1 4.3926 7.1175 3.7413 13 6 6.3340 7.9839 3.9334 14 7 5.9212 8.9639 4.7072 15 14 8.1375 7.8619 3.4626 16 1 8.8567 7.0381 4.4672 17 1 8.2582 7.2284 2.1250 18 1 8.7314 9.2224 3.4214 19 6 6.9570 5.0946 3.3245 20 6 6.3738 4.6054 4.6517 21 6 4.0025 2.0465 1.3043 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5138 0.8900 27 1 3.9280 0.5456 -0.3228 28 1 3.2640 3.1179 -1.4554 29 1 4.9719 2.6337 -1.0688 30 1 2.8671 3.8872 0.8372 31 1 5.0785 5.1206 0.1484 32 1 5.9323 3.8150 1.0057 33 1 4.5709 4.4057 2.9603 34 1 6.5533 9.6231 5.0338 35 1 7.2407 4.2371 2.7143 36 1 7.8360 5.7092 3.5184 37 1 7.1488 4.0941 5.2227 38 1 6.0046 5.4576 5.2224 39 1 5.5525 3.9162 4.4556 40 1 5.0403 1.7692 1.4896 41 1 3.3607 1.8922 2.1717 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309026549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:38 Heat of formation + Delta-G solvation = -50.950162 kcal Electronic energy + Delta-G solvation = -17796.517551 eV Core-core repulsion = 15097.201360 eV Total energy + Delta-G solvation = -2699.316191 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.61804 -38.56300 -37.10787 -34.35971 -32.85730 -31.65180 -29.18552 -27.11919 -26.53288 -24.98777 -23.69866 -23.13816 -21.31753 -20.38202 -18.50970 -17.50318 -17.01885 -16.76986 -16.47236 -16.19853 -15.43452 -15.02145 -14.97745 -14.52168 -14.43143 -14.11344 -13.81262 -13.42519 -13.22995 -13.07383 -12.93063 -12.67943 -12.48251 -12.32347 -12.28775 -12.05034 -11.69067 -11.58484 -11.35271 -11.27809 -11.09671 -10.85662 -10.63864 -10.34240 -8.94507 -8.23079 -6.22703 1.29750 1.34998 1.44399 2.34416 2.69191 3.11420 3.45457 3.72155 3.79004 3.93497 4.08951 4.21881 4.25976 4.31220 4.35450 4.44845 4.47967 4.52263 4.59223 4.75611 4.82982 4.87443 4.89832 4.93944 4.98476 5.04846 5.07899 5.15402 5.18951 5.27128 5.29985 5.35994 5.52935 5.58985 5.74559 6.10456 6.40666 6.76295 6.81209 6.85195 7.40679 8.94508 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.044315 B = 0.004487 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.695667 B = 6238.259840 C = 6310.292092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.392 6.392 4 C 0.069 3.931 5 C -0.128 4.128 6 C -0.102 4.102 7 C 0.070 3.930 8 N -0.687 5.687 9 C 0.189 3.811 10 H 0.022 0.978 11 C -0.487 4.487 12 H 0.033 0.967 13 C 0.011 3.989 14 N -0.952 5.952 15 Si 0.945 3.055 16 H -0.266 1.266 17 H -0.252 1.252 18 H -0.301 1.301 19 C -0.155 4.155 20 C -0.133 4.133 21 C -0.153 4.153 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.034 0.966 33 H 0.336 0.664 34 H 0.263 0.737 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.041 0.959 39 H 0.059 0.941 40 H 0.099 0.901 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 -20.972 -10.586 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.312 6.312 4 C 0.011 3.989 5 C -0.166 4.166 6 C -0.121 4.121 7 C -0.059 4.059 8 N -0.318 5.318 9 C 0.079 3.921 10 H 0.040 0.960 11 C -0.526 4.526 12 H 0.051 0.949 13 C -0.185 4.185 14 N -0.593 5.593 15 Si 0.773 3.227 16 H -0.192 1.192 17 H -0.177 1.177 18 H -0.229 1.229 19 C -0.194 4.194 20 C -0.190 4.190 21 C -0.191 4.191 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.110 0.890 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.155 0.845 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.075 0.925 38 H 0.061 0.939 39 H 0.077 0.923 40 H 0.117 0.883 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.971 -20.163 -10.789 23.060 hybrid contribution 1.383 -0.025 0.550 1.489 sum -1.588 -20.188 -10.239 22.692 Atomic orbital electron populations 1.21776 0.93271 1.03334 1.02467 1.22721 0.96100 0.82921 1.00910 1.87897 1.20634 1.27997 1.94654 1.23046 0.81167 0.98356 0.96286 1.23224 1.02192 0.95039 0.96146 1.22417 0.98220 0.94007 0.97412 1.21994 0.96309 0.95534 0.92102 1.60484 1.41191 1.25128 1.05007 1.19463 0.87659 0.91142 0.93827 0.96009 1.21140 0.94912 1.08563 1.28000 0.94905 1.25711 1.02992 0.94870 0.94930 1.70048 1.36512 1.16061 1.36719 0.85914 0.80721 0.76008 0.80097 1.19157 1.17661 1.22884 1.22392 0.99083 0.99349 0.98529 1.21568 1.00192 1.00467 0.96791 1.23579 1.01761 0.95903 0.97843 0.92874 0.92334 0.88969 0.91987 0.92780 0.88790 0.91121 0.87314 0.90745 0.92714 0.94787 0.84502 0.92791 0.91675 0.94464 0.92486 0.93941 0.92255 0.88288 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 10.28 71.98 0.74 -1.48 16 2 C 0.05 0.82 6.50 71.98 0.47 1.29 16 3 O -0.39 -9.20 10.27 -148.98 -1.53 -10.73 16 4 C 0.07 1.41 4.38 31.18 0.14 1.55 16 5 C -0.13 -2.76 7.47 31.12 0.23 -2.53 16 6 C -0.10 -2.81 3.79 -10.27 -0.04 -2.85 16 7 C 0.07 2.27 5.30 86.30 0.46 2.73 16 8 N -0.69 -28.14 6.26 -495.45 -3.10 -31.24 16 9 C 0.19 8.84 1.92 44.17 0.08 8.92 16 10 H 0.02 1.07 6.89 -2.39 -0.02 1.05 16 11 C -0.49 -28.19 7.86 25.60 0.20 -27.99 16 12 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 13 C 0.01 0.66 5.44 84.65 0.46 1.12 16 14 N -0.95 -60.49 13.96 21.45 0.30 -60.19 16 15 Si 0.94 45.47 24.33 68.60 1.67 47.14 16 16 H -0.27 -12.09 6.91 99.48 0.69 -11.40 16 17 H -0.25 -11.30 6.53 99.48 0.65 -10.65 16 18 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 19 C -0.15 -6.28 5.23 30.60 0.16 -6.12 16 20 C -0.13 -5.12 9.40 71.98 0.68 -4.45 16 21 C -0.15 -3.51 7.48 31.18 0.23 -3.28 16 22 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.09 1.43 7.87 -2.39 -0.02 1.42 16 28 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.11 1.93 8.10 -2.39 -0.02 1.91 16 30 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.05 1.88 8.13 -2.39 -0.02 1.86 16 32 H 0.03 1.01 7.11 -2.38 -0.02 0.99 16 33 H 0.34 13.00 6.55 -89.69 -0.59 12.41 16 34 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 35 H 0.06 2.23 7.40 -2.39 -0.02 2.21 16 36 H 0.04 1.60 3.39 -2.39 -0.01 1.59 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.04 1.96 6.89 -2.39 -0.02 1.94 16 39 H 0.06 2.03 6.61 -2.39 -0.02 2.01 16 40 H 0.10 1.99 7.92 -2.38 -0.02 1.98 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -67.41 316.92 1.47 -65.94 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.32 Total: 22.17 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 3.81 Total: -33.09 kcal Atomic # 7 Polarization: -88.63 SS G_CDS: -2.80 Total: -91.43 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -1.53 Total: -10.73 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.67 Total: 47.14 kcal Total: -67.41 1.47 -65.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309026549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.994 kcal (2) G-P(sol) polarization free energy of solvation -67.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds