Wall clock time and date at job start Sun Mar 29 2020 23:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52989 * 109.47705 * 2 1 4 4 H 1.09004 * 109.47127 * 305.81800 * 3 2 1 5 5 C 1.50697 * 109.47390 * 185.81379 * 3 2 1 6 6 H 1.08002 * 120.00035 * 239.99705 * 5 3 2 7 7 C 1.37874 * 119.99843 * 60.00176 * 5 3 2 8 8 N 1.31513 * 120.00296 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00048 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47336 * 89.99841 * 9 7 5 11 11 H 1.48500 * 109.47093 * 209.99879 * 9 7 5 12 12 H 1.48501 * 109.46875 * 329.99784 * 9 7 5 13 13 N 1.46902 * 109.47118 * 65.81080 * 3 2 1 14 14 C 1.46893 * 111.00543 * 258.06040 * 13 3 2 15 15 H 1.09001 * 109.47367 * 43.21530 * 14 13 3 16 16 C 1.52999 * 109.46977 * 283.22052 * 14 13 3 17 17 C 1.52997 * 109.47617 * 163.21720 * 14 13 3 18 18 C 1.53002 * 109.47167 * 295.00153 * 17 14 13 19 19 H 1.08998 * 110.43359 * 305.69765 * 18 17 14 20 20 C 1.54806 * 110.48976 * 183.15164 * 18 17 14 21 21 C 1.55226 * 101.99121 * 220.51845 * 20 18 17 22 22 O 1.44381 * 103.56182 * 36.88236 * 21 20 18 23 23 C 1.43747 * 106.97551 * 320.01241 * 22 21 20 24 24 H 1.09001 * 109.46677 * 306.49932 * 1 2 3 25 25 H 1.08997 * 109.46992 * 186.50240 * 1 2 3 26 26 H 1.08995 * 109.46822 * 66.50050 * 1 2 3 27 27 H 1.09005 * 109.47143 * 120.00351 * 2 1 3 28 28 H 1.09003 * 109.46865 * 239.99530 * 2 1 3 29 29 H 0.97004 * 120.00648 * 180.02562 * 8 7 5 30 30 H 1.00901 * 110.99710 * 134.09933 * 13 3 2 31 31 H 1.08998 * 109.47368 * 179.97438 * 16 14 13 32 32 H 1.09001 * 109.47004 * 299.99229 * 16 14 13 33 33 H 1.09001 * 109.47530 * 59.99781 * 16 14 13 34 34 H 1.09005 * 109.47112 * 54.99667 * 17 14 13 35 35 H 1.08997 * 109.47732 * 174.99930 * 17 14 13 36 36 H 1.09005 * 110.90583 * 338.64164 * 20 18 17 37 37 H 1.09006 * 110.90710 * 102.24291 * 20 18 17 38 38 H 1.08999 * 110.51633 * 278.38769 * 21 20 18 39 39 H 1.08993 * 110.78142 * 155.50161 * 21 20 18 40 40 H 1.09007 * 109.87681 * 267.09053 * 23 22 21 41 41 H 1.09004 * 110.00387 * 146.01353 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4423 0.0000 4 1 1.5943 1.9854 -0.8333 5 6 3.5402 1.4447 -0.1439 6 1 4.1559 1.8856 0.6261 7 6 4.1267 0.8841 -1.2587 8 7 3.3770 0.3477 -2.1967 9 14 5.9861 0.8876 -1.4375 10 1 6.5443 -0.3468 -0.8292 11 1 6.3448 0.9355 -2.8777 12 1 6.5474 2.0769 -0.7477 13 7 1.6684 2.0932 1.2634 14 6 0.5070 2.9738 1.0802 15 1 -0.2349 2.4723 0.4588 16 6 0.9518 4.2692 0.3982 17 6 -0.1061 3.2998 2.4436 18 6 -0.6632 2.0204 3.0712 19 1 -1.3575 1.5322 2.3874 20 6 -1.3599 2.3361 4.4171 21 6 -0.9060 1.1446 5.3025 22 8 0.4542 0.9077 4.8799 23 6 0.4828 1.0628 3.4511 24 1 -0.3633 0.6113 0.8261 25 1 -0.3633 -1.0210 0.1164 26 1 -0.3633 0.4098 -0.9424 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.7895 -0.0471 -2.9808 30 1 2.4492 2.6005 1.6522 31 1 0.0900 4.9225 0.2619 32 1 1.6936 4.7708 1.0197 33 1 1.3885 4.0370 -0.5731 34 1 0.6599 3.7204 3.0952 35 1 -0.9118 4.0227 2.3163 36 1 -1.0049 3.2819 4.8265 37 1 -2.4437 2.3464 4.3011 38 1 -1.5255 0.2685 5.1109 39 1 -0.9386 1.4130 6.3584 40 1 0.3327 0.0960 2.9703 41 1 1.4381 1.4864 3.1411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309096003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:42 Heat of formation + Delta-G solvation = -62.816176 kcal Electronic energy + Delta-G solvation = -18839.546060 eV Core-core repulsion = 16139.715321 eV Total energy + Delta-G solvation = -2699.830739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.25728 -37.06963 -34.07272 -32.15124 -31.26491 -29.38629 -28.63543 -26.02331 -25.43714 -22.93143 -22.20004 -20.43878 -20.03128 -19.18887 -16.54677 -16.20653 -15.66576 -15.02703 -14.51405 -14.26336 -13.91031 -13.44079 -12.97713 -12.77543 -12.53416 -12.35931 -12.03755 -11.84514 -11.69098 -11.47619 -11.17858 -11.12140 -10.85257 -10.69053 -10.52170 -10.43099 -10.30404 -10.21456 -10.02807 -9.63761 -9.28175 -9.14214 -8.80972 -8.42314 -7.15965 -6.02566 -4.10171 3.29091 3.35983 3.38500 4.37341 4.40291 4.83524 4.96116 5.12243 5.26217 5.30919 5.38527 5.64504 5.67220 5.76402 5.80826 5.89678 5.96672 6.05028 6.13515 6.20662 6.29328 6.33567 6.41149 6.46074 6.50799 6.63663 6.66310 6.75591 6.98092 7.09020 7.19611 7.36415 7.48454 7.59762 7.77790 7.97631 8.26873 8.39030 8.67535 9.02464 9.56056 11.01921 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028983 B = 0.006602 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.840004 B = 4239.999138 C = 4381.067997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 C 0.217 3.783 4 H 0.012 0.988 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.679 5.679 14 C 0.078 3.922 15 H 0.076 0.924 16 C -0.179 4.179 17 C -0.098 4.098 18 C -0.108 4.108 19 H 0.074 0.926 20 C -0.154 4.154 21 C 0.045 3.955 22 O -0.390 6.390 23 C 0.049 3.951 24 H 0.051 0.949 25 H 0.026 0.974 26 H 0.034 0.966 27 H 0.036 0.964 28 H 0.087 0.913 29 H 0.260 0.740 30 H 0.331 0.669 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.831 4.237 8.653 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C 0.110 3.890 4 H 0.030 0.970 5 C -0.563 4.563 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.310 5.310 14 C -0.033 4.033 15 H 0.094 0.906 16 C -0.238 4.238 17 C -0.136 4.136 18 C -0.127 4.127 19 H 0.092 0.908 20 C -0.192 4.192 21 C -0.032 4.032 22 O -0.310 6.310 23 C -0.026 4.026 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.149 0.851 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.005 3.549 8.802 13.083 hybrid contribution 1.090 0.711 -0.942 1.607 sum -7.915 4.260 7.860 11.940 Atomic orbital electron populations 1.21950 0.99893 0.98909 0.99943 1.21527 0.91309 0.99692 1.01789 1.19096 0.94058 0.91053 0.84794 0.97040 1.21459 0.91700 1.38272 1.04918 0.92416 1.24902 0.97989 0.95142 0.95749 1.69885 1.34715 1.38633 1.09342 0.86595 0.85839 0.78455 0.77077 1.20638 1.21361 1.20025 1.60932 1.07859 1.31999 1.30206 1.21687 0.95132 0.91960 0.94489 0.90627 1.22493 1.00586 0.98653 1.02031 1.21640 0.99286 0.95778 0.96903 1.22404 0.97336 0.97213 0.95764 0.90807 1.23271 1.00312 0.99338 0.96274 1.23457 0.84839 0.96232 0.98645 1.88873 1.26285 1.92215 1.23600 1.23830 1.02095 0.98227 0.78489 0.93047 0.95474 0.94706 0.94545 0.89431 0.92959 0.85067 0.93737 0.93171 0.91890 0.91999 0.92606 0.90886 0.91101 0.93064 0.90056 0.92972 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.14 37.16 0.34 -2.63 16 2 C -0.10 -2.45 5.45 -26.73 -0.15 -2.59 16 3 C 0.22 5.11 1.89 -68.87 -0.13 4.98 16 4 H 0.01 0.31 6.68 -51.93 -0.35 -0.04 16 5 C -0.52 -13.77 8.60 -34.44 -0.30 -14.07 16 6 H 0.06 1.50 7.40 -52.49 -0.39 1.11 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -24.79 11.29 55.43 0.63 -24.16 16 9 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -13.04 2.59 -100.96 -0.26 -13.30 16 14 C 0.08 1.29 1.75 -67.72 -0.12 1.17 16 15 H 0.08 1.34 6.07 -51.93 -0.32 1.02 16 16 C -0.18 -2.88 9.14 37.16 0.34 -2.54 16 17 C -0.10 -1.37 4.30 -26.73 -0.12 -1.48 16 18 C -0.11 -1.53 2.56 -89.09 -0.23 -1.75 16 19 H 0.07 1.05 7.13 -51.93 -0.37 0.68 16 20 C -0.15 -1.83 6.73 -24.60 -0.17 -1.99 16 21 C 0.05 0.58 7.72 38.34 0.30 0.88 16 22 O -0.39 -6.57 11.52 -35.23 -0.41 -6.97 16 23 C 0.05 0.82 6.17 37.73 0.23 1.06 16 24 H 0.05 0.94 3.80 -51.93 -0.20 0.74 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.09 2.32 5.94 -51.93 -0.31 2.01 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.33 6.49 7.67 -39.29 -0.30 6.19 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.17 7.12 -51.93 -0.37 0.81 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.83 7.87 -51.93 -0.41 0.43 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.94 7.86 -51.92 -0.41 0.53 16 41 H 0.13 2.34 5.28 -51.93 -0.27 2.06 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -27.00 307.55 -7.56 -34.56 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -7.05 Total: 6.60 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: -0.09 Total: -17.34 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.36 Total: -37.47 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.41 Total: -6.97 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.00 -7.56 -34.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309096003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.251 kcal (2) G-P(sol) polarization free energy of solvation -27.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds