Wall clock time and date at job start Sun Mar 29 2020 23:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52989 * 109.47705 * 2 1 4 4 H 1.09004 * 109.47127 * 305.81800 * 3 2 1 5 5 C 1.50697 * 109.47390 * 185.81379 * 3 2 1 6 6 H 1.08002 * 120.00035 * 239.99705 * 5 3 2 7 7 C 1.37874 * 119.99843 * 60.00176 * 5 3 2 8 8 N 1.31513 * 120.00296 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 120.00048 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47336 * 89.99841 * 9 7 5 11 11 H 1.48500 * 109.47093 * 209.99879 * 9 7 5 12 12 H 1.48501 * 109.46875 * 329.99784 * 9 7 5 13 13 N 1.46902 * 109.47118 * 65.81080 * 3 2 1 14 14 C 1.46893 * 111.00543 * 258.06040 * 13 3 2 15 15 H 1.09001 * 109.47367 * 43.21530 * 14 13 3 16 16 C 1.52999 * 109.46977 * 283.22052 * 14 13 3 17 17 C 1.52997 * 109.47617 * 163.21720 * 14 13 3 18 18 C 1.53002 * 109.47167 * 295.00153 * 17 14 13 19 19 H 1.08998 * 110.43359 * 305.69765 * 18 17 14 20 20 C 1.54806 * 110.48976 * 183.15164 * 18 17 14 21 21 C 1.55226 * 101.99121 * 220.51845 * 20 18 17 22 22 O 1.44381 * 103.56182 * 36.88236 * 21 20 18 23 23 C 1.43747 * 106.97551 * 320.01241 * 22 21 20 24 24 H 1.09001 * 109.46677 * 306.49932 * 1 2 3 25 25 H 1.08997 * 109.46992 * 186.50240 * 1 2 3 26 26 H 1.08995 * 109.46822 * 66.50050 * 1 2 3 27 27 H 1.09005 * 109.47143 * 120.00351 * 2 1 3 28 28 H 1.09003 * 109.46865 * 239.99530 * 2 1 3 29 29 H 0.97004 * 120.00648 * 180.02562 * 8 7 5 30 30 H 1.00901 * 110.99710 * 134.09933 * 13 3 2 31 31 H 1.08998 * 109.47368 * 179.97438 * 16 14 13 32 32 H 1.09001 * 109.47004 * 299.99229 * 16 14 13 33 33 H 1.09001 * 109.47530 * 59.99781 * 16 14 13 34 34 H 1.09005 * 109.47112 * 54.99667 * 17 14 13 35 35 H 1.08997 * 109.47732 * 174.99930 * 17 14 13 36 36 H 1.09005 * 110.90583 * 338.64164 * 20 18 17 37 37 H 1.09006 * 110.90710 * 102.24291 * 20 18 17 38 38 H 1.08999 * 110.51633 * 278.38769 * 21 20 18 39 39 H 1.08993 * 110.78142 * 155.50161 * 21 20 18 40 40 H 1.09007 * 109.87681 * 267.09053 * 23 22 21 41 41 H 1.09004 * 110.00387 * 146.01353 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4423 0.0000 4 1 1.5943 1.9854 -0.8333 5 6 3.5402 1.4447 -0.1439 6 1 4.1559 1.8856 0.6261 7 6 4.1267 0.8841 -1.2587 8 7 3.3770 0.3477 -2.1967 9 14 5.9861 0.8876 -1.4375 10 1 6.5443 -0.3468 -0.8292 11 1 6.3448 0.9355 -2.8777 12 1 6.5474 2.0769 -0.7477 13 7 1.6684 2.0932 1.2634 14 6 0.5070 2.9738 1.0802 15 1 -0.2349 2.4723 0.4588 16 6 0.9518 4.2692 0.3982 17 6 -0.1061 3.2998 2.4436 18 6 -0.6632 2.0204 3.0712 19 1 -1.3575 1.5322 2.3874 20 6 -1.3599 2.3361 4.4171 21 6 -0.9060 1.1446 5.3025 22 8 0.4542 0.9077 4.8799 23 6 0.4828 1.0628 3.4511 24 1 -0.3633 0.6113 0.8261 25 1 -0.3633 -1.0210 0.1164 26 1 -0.3633 0.4098 -0.9424 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.7895 -0.0471 -2.9808 30 1 2.4492 2.6005 1.6522 31 1 0.0900 4.9225 0.2619 32 1 1.6936 4.7708 1.0197 33 1 1.3885 4.0370 -0.5731 34 1 0.6599 3.7204 3.0952 35 1 -0.9118 4.0227 2.3163 36 1 -1.0049 3.2819 4.8265 37 1 -2.4437 2.3464 4.3011 38 1 -1.5255 0.2685 5.1109 39 1 -0.9386 1.4130 6.3584 40 1 0.3327 0.0960 2.9703 41 1 1.4381 1.4864 3.1411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309096003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:41 Heat of formation + Delta-G solvation = -78.361411 kcal Electronic energy + Delta-G solvation = -18840.220152 eV Core-core repulsion = 16139.715321 eV Total energy + Delta-G solvation = -2700.504831 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.45957 -38.58812 -35.72758 -33.74196 -32.90708 -30.76712 -29.94470 -27.88003 -26.67967 -24.72670 -23.36754 -21.77773 -21.44325 -20.79686 -18.47914 -17.40484 -16.88816 -16.75915 -15.97992 -15.67762 -15.49549 -14.85537 -14.54540 -14.27686 -13.86189 -13.60550 -13.54189 -13.37964 -13.12350 -13.03826 -12.89175 -12.68354 -12.45286 -12.19278 -11.98551 -11.93253 -11.63523 -11.56418 -11.44062 -11.30213 -10.91017 -10.77488 -10.47160 -10.36281 -8.78385 -8.08351 -6.22689 1.40344 1.42289 1.50723 2.42226 3.18212 3.28938 3.70967 3.75353 3.90505 4.17856 4.30667 4.42593 4.50956 4.55223 4.60662 4.68737 4.74509 4.77706 4.86381 4.90911 4.96515 5.01876 5.09035 5.12527 5.18025 5.22478 5.24944 5.37487 5.41228 5.51212 5.55413 5.67480 5.74424 5.80950 6.03357 6.21987 6.34315 6.54238 6.88664 7.10973 7.47522 8.94377 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028983 B = 0.006602 C = 0.006390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.840004 B = 4239.999138 C = 4381.067997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 C 0.228 3.772 4 H -0.018 1.018 5 C -0.540 4.540 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.952 3.048 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.670 5.670 14 C 0.077 3.923 15 H 0.065 0.935 16 C -0.172 4.172 17 C -0.087 4.087 18 C -0.107 4.107 19 H 0.073 0.927 20 C -0.143 4.143 21 C 0.036 3.964 22 O -0.416 6.416 23 C 0.052 3.948 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.029 0.971 27 H 0.025 0.975 28 H 0.054 0.946 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.028 0.972 34 H 0.062 0.938 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.031 0.969 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.990 5.387 10.118 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.137 4.137 3 C 0.120 3.880 4 H -0.001 1.001 5 C -0.578 4.578 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.778 3.222 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.194 1.194 13 N -0.300 5.300 14 C -0.033 4.033 15 H 0.084 0.916 16 C -0.231 4.231 17 C -0.125 4.125 18 C -0.126 4.126 19 H 0.092 0.908 20 C -0.181 4.181 21 C -0.040 4.040 22 O -0.336 6.336 23 C -0.024 4.024 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.049 0.951 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.176 4.711 10.285 15.216 hybrid contribution 1.423 0.351 -1.350 1.992 sum -8.753 5.062 8.935 13.493 Atomic orbital electron populations 1.21811 0.97068 1.00220 1.00380 1.21350 0.93842 0.99085 0.99467 1.18811 0.92517 0.91135 0.85584 1.00067 1.21846 0.93367 1.37823 1.04793 0.92598 1.25635 1.01983 0.95035 0.95664 1.70019 1.36226 1.39411 1.09733 0.85652 0.81096 0.78471 0.76949 1.20496 1.21175 1.19356 1.60896 1.08473 1.32967 1.27651 1.21771 0.93731 0.91495 0.96348 0.91640 1.22405 1.01648 0.98894 1.00154 1.21556 0.99896 0.96308 0.94721 1.22375 0.96493 0.96527 0.97192 0.90812 1.23238 1.01577 0.99126 0.94125 1.23739 0.83058 0.97127 1.00078 1.88840 1.28939 1.92459 1.23372 1.23641 1.02251 0.97723 0.78783 0.91328 0.94021 0.95148 0.95648 0.92766 0.93104 0.85298 0.91043 0.92528 0.95274 0.91900 0.89865 0.90002 0.88586 0.92414 0.87985 0.95076 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 9.14 71.98 0.66 -4.80 16 2 C -0.10 -4.74 5.45 30.59 0.17 -4.58 16 3 C 0.23 11.01 1.89 44.16 0.08 11.09 16 4 H -0.02 -0.99 6.68 -2.38 -0.02 -1.01 16 5 C -0.54 -28.98 8.60 25.60 0.22 -28.76 16 6 H 0.06 2.95 7.40 -2.91 -0.02 2.93 16 7 C 0.02 0.89 5.29 84.65 0.45 1.33 16 8 N -0.91 -52.53 11.29 21.45 0.24 -52.29 16 9 Si 0.95 43.69 29.54 68.60 2.03 45.71 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 12 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 13 N -0.67 -25.89 2.59 -473.34 -1.22 -27.11 16 14 C 0.08 2.45 1.75 44.92 0.08 2.53 16 15 H 0.07 2.25 6.07 -2.39 -0.01 2.23 16 16 C -0.17 -5.35 9.14 71.98 0.66 -4.69 16 17 C -0.09 -2.18 4.30 30.59 0.13 -2.05 16 18 C -0.11 -2.75 2.56 -9.81 -0.03 -2.77 16 19 H 0.07 1.91 7.13 -2.39 -0.02 1.89 16 20 C -0.14 -2.85 6.73 31.97 0.22 -2.64 16 21 C 0.04 0.83 7.72 72.75 0.56 1.39 16 22 O -0.42 -13.50 11.52 -148.98 -1.72 -15.21 16 23 C 0.05 1.70 6.17 72.35 0.45 2.14 16 24 H 0.07 2.46 3.80 -2.39 -0.01 2.45 16 25 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.02 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.05 2.98 5.94 -2.39 -0.01 2.97 16 29 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.33 13.00 7.67 -89.69 -0.69 12.31 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.03 1.08 7.12 -2.39 -0.02 1.07 16 34 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.08 1.52 7.87 -2.38 -0.02 1.50 16 37 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.03 1.12 7.86 -2.38 -0.02 1.10 16 41 H 0.11 3.95 5.28 -2.38 -0.01 3.94 16 Total: -1.00 -59.43 307.55 3.28 -56.15 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.31 Total: 24.55 kcal Atomic # 6 Polarization: -35.44 SS G_CDS: 3.64 Total: -31.80 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -0.98 Total: -79.40 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -1.72 Total: -15.21 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -59.43 3.28 -56.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309096003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.214 kcal (2) G-P(sol) polarization free energy of solvation -59.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds