Wall clock time and date at job start Sun Mar 29 2020 23:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47310 * 2 1 4 4 H 1.08999 * 109.47241 * 305.81979 * 3 2 1 5 5 C 1.50700 * 109.46970 * 185.82203 * 3 2 1 6 6 H 1.08001 * 119.99509 * 239.99682 * 5 3 2 7 7 C 1.37872 * 120.00079 * 60.00127 * 5 3 2 8 8 N 1.31509 * 120.00224 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00043 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46752 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47465 * 119.99575 * 9 7 5 12 12 H 1.48496 * 109.47015 * 240.00314 * 9 7 5 13 13 N 1.46895 * 109.46927 * 65.82223 * 3 2 1 14 14 C 1.46905 * 110.99831 * 259.47470 * 13 3 2 15 15 H 1.08998 * 109.46951 * 51.54637 * 14 13 3 16 16 C 1.52992 * 109.47225 * 291.54228 * 14 13 3 17 17 C 1.53002 * 109.46897 * 171.54196 * 14 13 3 18 18 C 1.53006 * 109.47140 * 293.23552 * 17 14 13 19 19 H 1.09007 * 110.45310 * 51.07706 * 18 17 14 20 20 C 1.54507 * 110.51044 * 173.67829 * 18 17 14 21 21 C 1.54476 * 104.06387 * 118.65085 * 20 18 17 22 22 O 1.44429 * 104.80163 * 23.97701 * 21 20 18 23 23 C 1.44645 * 105.36734 * 319.56559 * 22 21 20 24 24 H 1.09001 * 109.47461 * 183.98600 * 1 2 3 25 25 H 1.08997 * 109.47186 * 303.98836 * 1 2 3 26 26 H 1.09004 * 109.46887 * 63.98834 * 1 2 3 27 27 H 1.09001 * 109.47534 * 239.99615 * 2 1 3 28 28 H 1.09005 * 109.47058 * 119.99872 * 2 1 3 29 29 H 0.96999 * 120.00318 * 179.97438 * 8 7 5 30 30 H 1.00895 * 111.00424 * 23.43252 * 13 3 2 31 31 H 1.09010 * 109.47182 * 180.02562 * 16 14 13 32 32 H 1.09003 * 109.47317 * 299.99377 * 16 14 13 33 33 H 1.08992 * 109.47786 * 60.00081 * 16 14 13 34 34 H 1.08992 * 109.47514 * 53.23756 * 17 14 13 35 35 H 1.09001 * 109.46917 * 173.24018 * 17 14 13 36 36 H 1.09001 * 110.50957 * 237.29257 * 20 18 17 37 37 H 1.08999 * 110.51062 * 359.86638 * 20 18 17 38 38 H 1.08994 * 110.37351 * 142.80948 * 21 20 18 39 39 H 1.09002 * 110.36773 * 265.14684 * 21 20 18 40 40 H 1.09001 * 110.34088 * 281.59463 * 23 22 21 41 41 H 1.09003 * 110.50344 * 159.18295 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5941 1.9856 -0.8333 5 6 3.5401 1.4449 -0.1441 6 1 4.1558 1.8858 0.6259 7 6 4.1264 0.8843 -1.2590 8 7 3.3767 0.3470 -2.1964 9 14 5.9859 0.8878 -1.4379 10 1 6.5956 1.5483 -0.2558 11 1 6.4768 -0.5104 -1.5324 12 1 6.3633 1.6292 -2.6680 13 7 1.6684 2.0932 1.2635 14 6 0.4865 2.9478 1.0878 15 1 -0.3069 2.3760 0.6066 16 6 0.8513 4.1494 0.2139 17 6 0.0045 3.4387 2.4544 18 6 -0.5183 2.2524 3.2671 19 1 0.2157 1.4466 3.2803 20 6 -0.8643 2.6932 4.7070 21 6 -2.3774 2.4090 4.8333 22 8 -2.6435 1.3838 3.8513 23 6 -1.8615 1.7518 2.6914 24 1 -0.3634 -1.0252 0.0714 25 1 -0.3633 0.5745 0.8521 26 1 -0.3633 0.4507 -0.9236 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7892 -0.0470 -2.9809 30 1 1.5163 1.4106 1.9907 31 1 -0.0257 4.7837 0.0839 32 1 1.6447 4.7212 0.6951 33 1 1.1947 3.7998 -0.7597 34 1 0.8335 3.9059 2.9858 35 1 -0.7956 4.1662 2.3176 36 1 -0.3032 2.1036 5.4321 37 1 -0.6607 3.7556 4.8406 38 1 -2.6133 2.0465 5.8337 39 1 -2.9522 3.3076 4.6090 40 1 -2.3575 2.5488 2.1374 41 1 -1.7000 0.8858 2.0495 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309096004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:43 Heat of formation + Delta-G solvation = -63.833585 kcal Electronic energy + Delta-G solvation = -18585.909617 eV Core-core repulsion = 15886.034760 eV Total energy + Delta-G solvation = -2699.874858 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.57175 -37.23913 -34.20901 -32.19719 -31.27446 -29.59793 -28.55802 -26.35386 -25.57281 -23.13872 -22.58129 -20.51997 -19.78471 -19.33201 -16.60410 -16.19555 -15.61077 -15.57270 -14.96462 -14.64646 -14.02410 -13.54428 -13.20789 -13.10088 -12.64852 -12.46225 -12.10343 -11.79430 -11.51737 -11.38442 -11.34806 -11.20010 -10.91573 -10.78270 -10.66400 -10.50098 -10.42481 -10.13675 -9.89953 -9.78503 -9.71313 -9.51199 -8.97839 -8.28408 -7.11567 -5.93798 -3.96343 3.33471 3.41501 3.46854 3.98687 4.47436 4.60765 4.79096 4.92289 5.08876 5.22851 5.31244 5.36384 5.48950 5.54197 5.67711 5.71581 5.79211 5.83507 5.92562 6.00590 6.14820 6.20519 6.21200 6.26286 6.38028 6.41201 6.51308 6.67535 6.80556 6.84217 6.93311 7.01602 7.25873 7.47044 7.79608 7.96023 8.36523 8.64446 8.67131 9.12186 9.68686 11.12214 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035833 B = 0.005809 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.225182 B = 4819.062570 C = 5041.858570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.148 4.148 3 C 0.215 3.785 4 H 0.034 0.966 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.079 3.921 15 H 0.033 0.967 16 C -0.139 4.139 17 C -0.105 4.105 18 C -0.123 4.123 19 H 0.087 0.913 20 C -0.150 4.150 21 C 0.044 3.956 22 O -0.381 6.381 23 C 0.045 3.955 24 H 0.034 0.966 25 H 0.040 0.960 26 H 0.043 0.957 27 H 0.099 0.901 28 H 0.033 0.967 29 H 0.258 0.742 30 H 0.321 0.679 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.564 4.682 9.766 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.187 4.187 3 C 0.108 3.892 4 H 0.051 0.949 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.310 5.310 14 C -0.031 4.031 15 H 0.051 0.949 16 C -0.196 4.196 17 C -0.143 4.143 18 C -0.142 4.142 19 H 0.105 0.895 20 C -0.188 4.188 21 C -0.033 4.033 22 O -0.299 6.299 23 C -0.031 4.031 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.117 0.883 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.139 0.861 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.232 4.939 9.533 14.160 hybrid contribution 0.457 -0.603 -0.350 0.834 sum -8.775 4.336 9.183 13.421 Atomic orbital electron populations 1.22047 0.99685 0.99354 1.00071 1.22233 0.91453 1.02156 1.02852 1.19228 0.95361 0.88608 0.86026 0.94862 1.21284 0.91413 1.35574 1.04345 0.91993 1.24955 0.97962 0.95774 0.95996 1.69876 1.34494 1.39936 1.09584 0.86512 0.85990 0.77440 0.77866 1.19817 1.21303 1.21282 1.60876 1.33538 1.26174 1.10417 1.21531 0.92659 0.95129 0.93800 0.94901 1.21797 1.00002 0.97126 1.00712 1.21771 1.00247 0.96110 0.96178 1.22598 0.97785 0.99517 0.94273 0.89487 1.22998 0.96277 1.02207 0.97301 1.23383 0.95050 0.91528 0.93295 1.89134 1.68330 1.47243 1.25242 1.23725 0.90026 1.00656 0.88682 0.94735 0.94107 0.93765 0.88252 0.94840 0.93240 0.86084 0.94120 0.92440 0.91825 0.90846 0.92217 0.90800 0.90459 0.89534 0.92639 0.92270 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.06 37.16 0.34 -2.64 16 2 C -0.15 -3.41 5.10 -26.73 -0.14 -3.55 16 3 C 0.22 5.19 1.90 -68.86 -0.13 5.06 16 4 H 0.03 0.89 6.07 -51.93 -0.32 0.57 16 5 C -0.49 -13.29 8.84 -34.44 -0.30 -13.60 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.46 11.29 55.43 0.63 -24.84 16 9 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.68 -13.70 5.85 -100.96 -0.59 -14.29 16 14 C 0.08 1.34 2.03 -67.71 -0.14 1.20 16 15 H 0.03 0.58 5.16 -51.93 -0.27 0.31 16 16 C -0.14 -2.39 9.19 37.15 0.34 -2.05 16 17 C -0.11 -1.43 4.09 -26.73 -0.11 -1.54 16 18 C -0.12 -1.59 3.02 -89.05 -0.27 -1.86 16 19 H 0.09 1.25 6.36 -51.92 -0.33 0.92 16 20 C -0.15 -1.62 6.74 -25.17 -0.17 -1.79 16 21 C 0.04 0.48 7.64 37.93 0.29 0.77 16 22 O -0.38 -5.35 11.65 -35.23 -0.41 -5.76 16 23 C 0.05 0.61 6.32 37.93 0.24 0.85 16 24 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.70 3.56 -51.93 -0.19 0.52 16 26 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.10 2.62 5.93 -51.93 -0.31 2.31 16 28 H 0.03 0.76 8.01 -51.93 -0.42 0.34 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.32 6.20 6.07 -39.29 -0.24 5.96 16 31 H 0.04 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.26 6.53 -51.93 -0.34 0.92 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.73 7.93 -51.93 -0.41 0.32 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.74 7.73 -51.93 -0.40 0.34 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.75 7.72 -51.93 -0.40 0.34 16 41 H 0.09 1.32 6.07 -51.93 -0.32 1.01 16 LS Contribution 307.28 15.07 4.63 4.63 Total: -1.00 -28.23 307.28 -7.77 -35.99 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -6.86 Total: 5.55 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -0.14 Total: -17.78 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.04 Total: -39.12 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.41 Total: -5.76 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.23 -7.77 -35.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309096004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.841 kcal (2) G-P(sol) polarization free energy of solvation -28.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds