Wall clock time and date at job start Sun Mar 29 2020 23:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47310 * 2 1 4 4 H 1.08999 * 109.47241 * 305.81979 * 3 2 1 5 5 C 1.50700 * 109.46970 * 185.82203 * 3 2 1 6 6 H 1.08001 * 119.99509 * 239.99682 * 5 3 2 7 7 C 1.37872 * 120.00079 * 60.00127 * 5 3 2 8 8 N 1.31509 * 120.00224 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00043 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46752 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47465 * 119.99575 * 9 7 5 12 12 H 1.48496 * 109.47015 * 240.00314 * 9 7 5 13 13 N 1.46895 * 109.46927 * 65.82223 * 3 2 1 14 14 C 1.46905 * 110.99831 * 259.47470 * 13 3 2 15 15 H 1.08998 * 109.46951 * 51.54637 * 14 13 3 16 16 C 1.52992 * 109.47225 * 291.54228 * 14 13 3 17 17 C 1.53002 * 109.46897 * 171.54196 * 14 13 3 18 18 C 1.53006 * 109.47140 * 293.23552 * 17 14 13 19 19 H 1.09007 * 110.45310 * 51.07706 * 18 17 14 20 20 C 1.54507 * 110.51044 * 173.67829 * 18 17 14 21 21 C 1.54476 * 104.06387 * 118.65085 * 20 18 17 22 22 O 1.44429 * 104.80163 * 23.97701 * 21 20 18 23 23 C 1.44645 * 105.36734 * 319.56559 * 22 21 20 24 24 H 1.09001 * 109.47461 * 183.98600 * 1 2 3 25 25 H 1.08997 * 109.47186 * 303.98836 * 1 2 3 26 26 H 1.09004 * 109.46887 * 63.98834 * 1 2 3 27 27 H 1.09001 * 109.47534 * 239.99615 * 2 1 3 28 28 H 1.09005 * 109.47058 * 119.99872 * 2 1 3 29 29 H 0.96999 * 120.00318 * 179.97438 * 8 7 5 30 30 H 1.00895 * 111.00424 * 23.43252 * 13 3 2 31 31 H 1.09010 * 109.47182 * 180.02562 * 16 14 13 32 32 H 1.09003 * 109.47317 * 299.99377 * 16 14 13 33 33 H 1.08992 * 109.47786 * 60.00081 * 16 14 13 34 34 H 1.08992 * 109.47514 * 53.23756 * 17 14 13 35 35 H 1.09001 * 109.46917 * 173.24018 * 17 14 13 36 36 H 1.09001 * 110.50957 * 237.29257 * 20 18 17 37 37 H 1.08999 * 110.51062 * 359.86638 * 20 18 17 38 38 H 1.08994 * 110.37351 * 142.80948 * 21 20 18 39 39 H 1.09002 * 110.36773 * 265.14684 * 21 20 18 40 40 H 1.09001 * 110.34088 * 281.59463 * 23 22 21 41 41 H 1.09003 * 110.50344 * 159.18295 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5941 1.9856 -0.8333 5 6 3.5401 1.4449 -0.1441 6 1 4.1558 1.8858 0.6259 7 6 4.1264 0.8843 -1.2590 8 7 3.3767 0.3470 -2.1964 9 14 5.9859 0.8878 -1.4379 10 1 6.5956 1.5483 -0.2558 11 1 6.4768 -0.5104 -1.5324 12 1 6.3633 1.6292 -2.6680 13 7 1.6684 2.0932 1.2635 14 6 0.4865 2.9478 1.0878 15 1 -0.3069 2.3760 0.6066 16 6 0.8513 4.1494 0.2139 17 6 0.0045 3.4387 2.4544 18 6 -0.5183 2.2524 3.2671 19 1 0.2157 1.4466 3.2803 20 6 -0.8643 2.6932 4.7070 21 6 -2.3774 2.4090 4.8333 22 8 -2.6435 1.3838 3.8513 23 6 -1.8615 1.7518 2.6914 24 1 -0.3634 -1.0252 0.0714 25 1 -0.3633 0.5745 0.8521 26 1 -0.3633 0.4507 -0.9236 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.7892 -0.0470 -2.9809 30 1 1.5163 1.4106 1.9907 31 1 -0.0257 4.7837 0.0839 32 1 1.6447 4.7212 0.6951 33 1 1.1947 3.7998 -0.7597 34 1 0.8335 3.9059 2.9858 35 1 -0.7956 4.1662 2.3176 36 1 -0.3032 2.1036 5.4321 37 1 -0.6607 3.7556 4.8406 38 1 -2.6133 2.0465 5.8337 39 1 -2.9522 3.3076 4.6090 40 1 -2.3575 2.5488 2.1374 41 1 -1.7000 0.8858 2.0495 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309096004.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:43 Heat of formation + Delta-G solvation = -81.674349 kcal Electronic energy + Delta-G solvation = -18586.683251 eV Core-core repulsion = 15886.034760 eV Total energy + Delta-G solvation = -2700.648491 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.60762 -38.75250 -35.77752 -33.84969 -32.80148 -30.80723 -29.91471 -28.19924 -26.80347 -24.79210 -23.71898 -21.70422 -21.47082 -20.68376 -18.36783 -17.47716 -17.01819 -16.61844 -16.51917 -16.08075 -15.40983 -15.08590 -14.82774 -14.38245 -14.07359 -13.75464 -13.46163 -13.21291 -13.08163 -12.86460 -12.81885 -12.61708 -12.46201 -12.31170 -12.15850 -11.91960 -11.77439 -11.58998 -11.56584 -11.34886 -11.05633 -10.91967 -10.70539 -10.37308 -8.80038 -8.03668 -6.13820 1.40978 1.43427 1.54980 2.46349 3.06609 3.22617 3.60360 3.76775 3.81441 4.00181 4.22497 4.27120 4.36130 4.41549 4.45504 4.48027 4.63654 4.69488 4.74368 4.81737 4.85901 4.88535 4.95221 5.01331 5.09831 5.13179 5.20119 5.25254 5.30199 5.37000 5.48488 5.50766 5.63319 5.78548 5.89001 5.93310 6.40470 6.77890 6.97700 7.03489 7.55814 9.00009 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035833 B = 0.005809 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.225182 B = 4819.062570 C = 5041.858570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.142 4.142 3 C 0.224 3.776 4 H 0.005 0.995 5 C -0.506 4.506 6 H 0.049 0.951 7 C 0.008 3.992 8 N -0.922 5.922 9 Si 0.953 3.047 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.681 5.681 14 C 0.077 3.923 15 H 0.031 0.969 16 C -0.135 4.135 17 C -0.093 4.093 18 C -0.122 4.122 19 H 0.069 0.931 20 C -0.145 4.145 21 C 0.040 3.960 22 O -0.403 6.403 23 C 0.046 3.954 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.036 0.964 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.258 0.742 30 H 0.327 0.673 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.343 5.587 11.268 16.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.182 4.182 3 C 0.115 3.885 4 H 0.023 0.977 5 C -0.545 4.545 6 H 0.068 0.932 7 C -0.190 4.190 8 N -0.563 5.563 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.313 5.313 14 C -0.033 4.033 15 H 0.049 0.951 16 C -0.193 4.193 17 C -0.130 4.130 18 C -0.141 4.141 19 H 0.088 0.912 20 C -0.182 4.182 21 C -0.036 4.036 22 O -0.323 6.323 23 C -0.031 4.031 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.145 0.855 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.019 5.851 11.052 16.024 hybrid contribution 0.670 -0.857 -0.795 1.348 sum -9.348 4.994 10.257 14.749 Atomic orbital electron populations 1.21913 0.96677 1.00797 1.00635 1.22056 0.94145 1.00999 1.00956 1.18932 0.93645 0.89056 0.86851 0.97694 1.21592 0.93232 1.35486 1.04152 0.93226 1.25655 1.01964 0.95552 0.95808 1.70006 1.35985 1.40441 1.09894 0.85582 0.81229 0.77471 0.77754 1.19517 1.20849 1.20952 1.60748 1.35758 1.26111 1.08717 1.21631 0.91245 0.94324 0.96063 0.95138 1.21771 1.01210 0.97601 0.98726 1.21661 1.00862 0.96700 0.93805 1.22533 0.97131 0.98671 0.95782 0.91241 1.22980 0.96377 1.03275 0.95588 1.23601 0.95089 0.91536 0.93396 1.89112 1.68549 1.48677 1.25957 1.23693 0.90284 1.00402 0.88701 0.93083 0.92013 0.94483 0.91669 0.95071 0.93281 0.85470 0.90896 0.92858 0.95382 0.90876 0.89830 0.90516 0.88775 0.87966 0.91124 0.91279 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.46 9.06 71.98 0.65 -4.81 16 2 C -0.14 -6.68 5.10 30.59 0.16 -6.53 16 3 C 0.22 11.04 1.90 44.17 0.08 11.12 16 4 H 0.01 0.29 6.07 -2.39 -0.01 0.27 16 5 C -0.51 -28.19 8.84 25.60 0.23 -27.96 16 6 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 7 C 0.01 0.43 5.29 84.65 0.45 0.88 16 8 N -0.92 -53.49 11.29 21.44 0.24 -53.24 16 9 Si 0.95 44.64 29.54 68.60 2.03 46.66 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 13 N -0.68 -27.48 5.85 -473.32 -2.77 -30.25 16 14 C 0.08 2.53 2.03 44.91 0.09 2.62 16 15 H 0.03 1.03 5.16 -2.39 -0.01 1.02 16 16 C -0.14 -4.57 9.19 71.98 0.66 -3.90 16 17 C -0.09 -2.28 4.09 30.60 0.13 -2.15 16 18 C -0.12 -2.89 3.02 -9.78 -0.03 -2.92 16 19 H 0.07 1.89 6.36 -2.38 -0.02 1.88 16 20 C -0.14 -2.68 6.74 31.61 0.21 -2.46 16 21 C 0.04 0.74 7.64 72.48 0.55 1.29 16 22 O -0.40 -10.45 11.65 -148.98 -1.74 -12.19 16 23 C 0.05 1.12 6.32 72.48 0.46 1.58 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 2.08 3.56 -2.39 -0.01 2.07 16 26 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.06 3.54 5.93 -2.39 -0.01 3.53 16 28 H 0.03 1.43 8.01 -2.38 -0.02 1.41 16 29 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.33 12.49 6.07 -89.70 -0.54 11.95 16 31 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.03 1.12 6.53 -2.39 -0.02 1.11 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 1.71 7.93 -2.39 -0.02 1.69 16 36 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.44 7.73 -2.39 -0.02 1.43 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.55 7.72 -2.39 -0.02 1.53 16 41 H 0.08 2.17 6.07 -2.39 -0.01 2.15 16 Total: -1.00 -61.45 307.28 1.86 -59.58 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.46 Total: 22.68 kcal Atomic # 6 Polarization: -36.89 SS G_CDS: 3.64 Total: -33.25 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -2.52 Total: -83.50 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: -1.74 Total: -12.19 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -61.45 1.86 -59.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309096004.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.089 kcal (2) G-P(sol) polarization free energy of solvation -61.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds