Wall clock time and date at job start Sun Mar 29 2020 23:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47252 * 2 1 4 4 H 1.08995 * 109.47350 * 304.08299 * 3 2 1 5 5 C 1.50697 * 109.47089 * 184.07745 * 3 2 1 6 6 H 1.08005 * 120.00411 * 239.99928 * 5 3 2 7 7 C 1.37880 * 119.99960 * 59.72873 * 5 3 2 8 8 N 1.31513 * 119.99903 * 0.27804 * 7 5 3 9 9 Si 1.86796 * 120.00174 * 180.27340 * 7 5 3 10 10 H 1.48503 * 109.47219 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.47126 * 119.99990 * 9 7 5 12 12 H 1.48500 * 109.47310 * 240.00258 * 9 7 5 13 13 N 1.46910 * 109.47024 * 64.08218 * 3 2 1 14 14 C 1.46903 * 110.99724 * 204.61191 * 13 3 2 15 15 H 1.08994 * 109.46892 * 309.69704 * 14 13 3 16 16 C 1.52997 * 109.47428 * 69.69970 * 14 13 3 17 17 C 1.52997 * 109.46648 * 189.69875 * 14 13 3 18 18 C 1.53001 * 109.47463 * 68.43595 * 17 14 13 19 19 H 1.09004 * 110.74994 * 53.54279 * 18 17 14 20 20 C 1.55301 * 110.85391 * 177.01451 * 18 17 14 21 21 C 1.55205 * 100.82901 * 152.17733 * 20 18 17 22 22 O 1.43642 * 105.25773 * 323.82008 * 21 20 18 23 23 C 1.43229 * 109.97651 * 24.28361 * 22 21 20 24 24 H 1.09004 * 109.46822 * 304.44542 * 1 2 3 25 25 H 1.08996 * 109.47305 * 64.44420 * 1 2 3 26 26 H 1.08994 * 109.47357 * 184.44914 * 1 2 3 27 27 H 1.08999 * 109.46759 * 239.99967 * 2 1 3 28 28 H 1.08997 * 109.47148 * 120.00522 * 2 1 3 29 29 H 0.97000 * 120.00431 * 180.02562 * 8 7 5 30 30 H 1.00894 * 110.99713 * 80.65432 * 13 3 2 31 31 H 1.08991 * 109.47383 * 184.18229 * 16 14 13 32 32 H 1.09004 * 109.47141 * 304.18654 * 16 14 13 33 33 H 1.09005 * 109.47076 * 64.18085 * 16 14 13 34 34 H 1.09004 * 109.47334 * 188.43530 * 17 14 13 35 35 H 1.09003 * 109.47648 * 308.43291 * 17 14 13 36 36 H 1.08997 * 111.12402 * 270.24540 * 20 18 17 37 37 H 1.09002 * 111.12319 * 34.40232 * 20 18 17 38 38 H 1.08997 * 110.36987 * 204.80290 * 21 20 18 39 39 H 1.08997 * 110.12768 * 82.71340 * 21 20 18 40 40 H 1.09000 * 109.83419 * 238.77340 * 23 22 21 41 41 H 1.09006 * 109.90916 * 117.83980 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6183 1.9770 -0.8511 5 6 3.5436 1.4436 -0.1010 6 1 4.1372 1.8923 0.6818 7 6 4.1618 0.8668 -1.1902 8 7 3.4391 0.3205 -2.1435 9 14 6.0258 0.8614 -1.3117 10 1 6.6016 1.5335 -0.1192 11 1 6.5138 -0.5397 -1.3735 12 1 6.4440 1.5858 -2.5388 13 7 1.6325 2.1059 1.2458 14 6 1.5653 3.5627 1.0687 15 1 2.4905 3.9164 0.6138 16 6 0.3844 3.9122 0.1608 17 6 1.3775 4.2337 2.4307 18 6 2.6490 4.0611 3.2641 19 1 3.5219 4.4130 2.7142 20 6 2.5210 4.7955 4.6265 21 6 3.4668 3.9384 5.5097 22 8 3.2937 2.5887 5.0496 23 6 2.8278 2.5894 3.6952 24 1 -0.3633 0.5813 0.8475 25 1 -0.3634 0.4433 -0.9271 26 1 -0.3634 -1.0245 0.0797 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 3.8740 -0.0856 -2.9096 30 1 2.2513 1.8620 2.0044 31 1 0.3786 4.9851 -0.0308 32 1 0.4802 3.3750 -0.7828 33 1 -0.5468 3.6252 0.6493 34 1 1.1781 5.2959 2.2881 35 1 0.5373 3.7729 2.9502 36 1 2.8726 5.8245 4.5526 37 1 1.4971 4.7579 4.9984 38 1 3.1832 4.0197 6.5590 39 1 4.5001 4.2561 5.3705 40 1 1.8731 2.0672 3.6322 41 1 3.5592 2.1016 3.0507 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309096005.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:45 Heat of formation + Delta-G solvation = -59.673250 kcal Electronic energy + Delta-G solvation = -18725.684088 eV Core-core repulsion = 16025.989636 eV Total energy + Delta-G solvation = -2699.694452 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.49528 -36.95937 -34.21962 -32.14702 -31.27166 -29.34814 -29.09300 -25.94920 -25.60707 -22.99229 -22.16334 -20.63334 -19.73656 -19.16937 -16.82500 -16.48397 -15.75917 -15.01653 -14.68343 -14.48834 -13.74141 -13.45693 -13.17869 -12.91003 -12.73509 -12.36086 -11.94899 -11.81384 -11.46181 -11.38436 -11.20973 -11.04114 -11.01345 -10.66875 -10.65341 -10.53252 -10.47381 -10.13925 -9.84548 -9.55194 -9.41864 -9.28086 -8.95559 -8.33655 -7.21090 -5.98629 -4.11378 3.25596 3.34451 3.37446 4.05344 4.39800 4.58652 4.83419 5.00036 5.22313 5.28083 5.34413 5.47300 5.54770 5.68950 5.75290 5.81097 5.97138 6.01449 6.11212 6.15976 6.21633 6.30800 6.41387 6.43325 6.55181 6.55406 6.74548 6.79645 6.91177 7.15215 7.21652 7.23274 7.48980 7.64099 7.80060 8.12666 8.19321 8.37251 8.71631 9.01997 9.56212 11.01164 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019015 B = 0.008210 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.156784 B = 3409.834454 C = 4116.376835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.211 3.789 4 H 0.038 0.962 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.695 5.695 14 C 0.085 3.915 15 H 0.040 0.960 16 C -0.137 4.137 17 C -0.104 4.104 18 C -0.123 4.123 19 H 0.082 0.918 20 C -0.152 4.152 21 C 0.050 3.950 22 O -0.388 6.388 23 C 0.046 3.954 24 H 0.050 0.950 25 H 0.035 0.965 26 H 0.023 0.977 27 H 0.089 0.911 28 H 0.028 0.972 29 H 0.260 0.740 30 H 0.332 0.668 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 7.873 9.488 12.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C 0.103 3.897 4 H 0.056 0.944 5 C -0.582 4.582 6 H 0.069 0.931 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.332 5.332 14 C -0.025 4.025 15 H 0.058 0.942 16 C -0.195 4.195 17 C -0.142 4.142 18 C -0.141 4.141 19 H 0.101 0.899 20 C -0.189 4.189 21 C -0.026 4.026 22 O -0.308 6.308 23 C -0.030 4.030 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.107 0.893 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.155 0.845 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.933 7.496 9.326 12.595 hybrid contribution 2.101 0.381 -0.443 2.181 sum -1.832 7.878 8.883 12.013 Atomic orbital electron populations 1.21710 0.99036 0.98396 1.00367 1.21499 0.92095 0.99383 1.01585 1.19186 0.92442 0.91117 0.86957 0.94441 1.21889 0.92846 1.37626 1.05873 0.93071 1.24914 0.97802 0.95047 0.95694 1.69883 1.34711 1.37996 1.09677 0.86652 0.86343 0.77794 0.77898 1.19935 1.20938 1.21083 1.61242 1.56818 1.05218 1.09876 1.21305 0.97380 0.90460 0.93383 0.94229 1.21794 0.98161 0.99241 1.00321 1.21692 0.96108 1.00271 0.96109 1.22797 1.00056 0.95253 0.96018 0.89945 1.23358 1.00669 0.99589 0.95308 1.23347 0.98467 0.82536 0.98299 1.88403 1.87852 1.25725 1.28798 1.23609 1.00566 0.96550 0.82289 0.93062 0.94627 0.95771 0.89251 0.95281 0.92974 0.84542 0.93946 0.91978 0.92975 0.91872 0.91173 0.90315 0.90418 0.90266 0.92660 0.89473 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.85 37.16 0.37 -2.48 16 2 C -0.11 -2.57 5.44 -26.73 -0.15 -2.71 16 3 C 0.21 5.11 1.82 -68.86 -0.13 4.99 16 4 H 0.04 1.00 6.02 -51.93 -0.31 0.69 16 5 C -0.54 -14.47 8.26 -34.44 -0.28 -14.75 16 6 H 0.05 1.36 7.75 -52.48 -0.41 0.96 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.89 11.29 55.43 0.63 -24.26 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.69 -14.11 5.16 -100.96 -0.52 -14.63 16 14 C 0.09 1.53 2.56 -67.71 -0.17 1.36 16 15 H 0.04 0.80 7.81 -51.93 -0.41 0.40 16 16 C -0.14 -2.32 9.27 37.16 0.34 -1.98 16 17 C -0.10 -1.49 4.41 -26.73 -0.12 -1.61 16 18 C -0.12 -1.74 2.97 -88.67 -0.26 -2.00 16 19 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 20 C -0.15 -1.73 6.64 -24.34 -0.16 -1.89 16 21 C 0.05 0.62 7.78 38.33 0.30 0.92 16 22 O -0.39 -6.31 11.36 -35.23 -0.40 -6.71 16 23 C 0.05 0.75 5.43 37.88 0.21 0.95 16 24 H 0.05 1.02 7.60 -51.93 -0.39 0.62 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.09 2.39 5.96 -51.93 -0.31 2.08 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.33 6.64 3.35 -39.29 -0.13 6.51 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.19 6.32 -51.93 -0.33 0.86 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 35 H 0.07 1.00 7.99 -51.93 -0.41 0.59 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.46 6.62 -51.93 -0.34 1.11 16 41 H 0.08 1.41 7.21 -51.93 -0.37 1.04 16 LS Contribution 312.77 15.07 4.71 4.71 Total: -1.00 -27.84 312.77 -7.96 -35.80 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.20 Total: 6.39 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: -0.15 Total: -17.45 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.10 Total: -38.89 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.40 Total: -6.71 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.84 -7.96 -35.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309096005.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.873 kcal (2) G-P(sol) polarization free energy of solvation -27.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds