Wall clock time and date at job start Sun Mar 29 2020 23:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47146 * 2 1 4 4 H 1.09002 * 109.46799 * 302.73199 * 3 2 1 5 5 C 1.50697 * 109.47039 * 182.73286 * 3 2 1 6 6 H 1.08003 * 119.99675 * 245.71432 * 5 3 2 7 7 C 1.37879 * 120.00286 * 65.99462 * 5 3 2 8 8 N 1.31512 * 119.99728 * 192.95679 * 7 5 3 9 9 Si 1.86799 * 119.99646 * 12.95233 * 7 5 3 10 10 H 1.48499 * 109.46938 * 85.96777 * 9 7 5 11 11 H 1.48500 * 109.47003 * 205.96107 * 9 7 5 12 12 H 1.48495 * 109.47266 * 325.96291 * 9 7 5 13 13 N 1.46907 * 109.47106 * 62.73091 * 3 2 1 14 14 C 1.46895 * 110.99804 * 201.05069 * 13 3 2 15 15 H 1.09003 * 109.47517 * 328.79161 * 14 13 3 16 16 C 1.53005 * 109.46814 * 88.79069 * 14 13 3 17 17 C 1.52993 * 109.47377 * 208.78536 * 14 13 3 18 18 C 1.53008 * 109.46749 * 65.00373 * 17 14 13 19 19 H 1.09001 * 110.43263 * 305.70260 * 18 17 14 20 20 C 1.54814 * 110.48843 * 183.15713 * 18 17 14 21 21 C 1.55222 * 101.98956 * 220.52033 * 20 18 17 22 22 O 1.44379 * 103.56389 * 36.87913 * 21 20 18 23 23 C 1.43744 * 106.97660 * 320.01252 * 22 21 20 24 24 H 1.09000 * 109.47107 * 184.92107 * 1 2 3 25 25 H 1.08997 * 109.47177 * 304.92470 * 1 2 3 26 26 H 1.09000 * 109.46714 * 64.92717 * 1 2 3 27 27 H 1.08995 * 109.47551 * 239.99644 * 2 1 3 28 28 H 1.08997 * 109.46824 * 119.99624 * 2 1 3 29 29 H 0.97006 * 119.99335 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99692 * 77.10187 * 13 3 2 31 31 H 1.08991 * 109.47351 * 64.95042 * 16 14 13 32 32 H 1.09008 * 109.47171 * 184.94926 * 16 14 13 33 33 H 1.09001 * 109.47033 * 304.94711 * 16 14 13 34 34 H 1.09000 * 109.47733 * 185.00065 * 17 14 13 35 35 H 1.08997 * 109.47415 * 305.00744 * 17 14 13 36 36 H 1.09006 * 110.90672 * 338.64448 * 20 18 17 37 37 H 1.08999 * 110.90484 * 102.24087 * 20 18 17 38 38 H 1.09005 * 110.51781 * 278.38803 * 21 20 18 39 39 H 1.08993 * 110.78476 * 155.50198 * 21 20 18 40 40 H 1.08998 * 109.87867 * 267.08839 * 23 22 21 41 41 H 1.09009 * 110.00370 * 146.00922 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6372 1.9702 -0.8645 5 6 3.5455 1.4430 -0.0677 6 1 4.1233 1.8143 0.7657 7 6 4.1850 0.9749 -1.1960 8 7 5.4777 0.7348 -1.1671 9 14 3.2152 0.6817 -2.7653 10 1 3.1289 1.9471 -3.5376 11 1 3.8987 -0.3519 -3.5838 12 1 1.8473 0.2166 -2.4223 13 7 1.6049 2.1157 1.2311 14 6 1.6228 3.5754 1.0673 15 1 2.4142 3.8534 0.3712 16 6 0.2734 4.0435 0.5186 17 6 1.8796 4.2376 2.4224 18 6 3.2810 3.8682 2.9130 19 1 3.4062 2.7855 2.9270 20 6 3.5365 4.4616 4.3199 21 6 5.0076 4.9433 4.2045 22 8 5.0976 5.4347 2.8499 23 6 4.3544 4.5239 2.0227 24 1 -0.3633 -1.0239 0.0882 25 1 -0.3633 0.5883 0.8426 26 1 -0.3633 0.4355 -0.9309 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 5.9275 0.4051 -1.9608 30 1 2.1710 1.8331 2.0171 31 1 -0.5065 3.8445 1.2536 32 1 0.3156 5.1134 0.3143 33 1 0.0497 3.5061 -0.4030 34 1 1.8048 5.3200 2.3180 35 1 1.1392 3.8900 3.1429 36 1 2.8673 5.2994 4.5161 37 1 3.4349 3.6960 5.0892 38 1 5.6951 4.1114 4.3575 39 1 5.2098 5.7429 4.9171 40 1 5.0203 3.7600 1.6215 41 1 3.8778 5.0661 1.2059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309096006.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:47 Heat of formation + Delta-G solvation = -83.488125 kcal Electronic energy + Delta-G solvation = -18746.529620 eV Core-core repulsion = 16045.802478 eV Total energy + Delta-G solvation = -2700.727142 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.62565 -38.62209 -35.85696 -34.05705 -33.03505 -30.83950 -30.18720 -28.23900 -26.83138 -24.39172 -23.64980 -21.89814 -21.47708 -20.56205 -19.06523 -17.63234 -17.04154 -16.84771 -16.29414 -15.91414 -15.64025 -15.11090 -14.76845 -14.23020 -14.05608 -13.78729 -13.69062 -13.46209 -13.22066 -13.05957 -12.83333 -12.56323 -12.49554 -12.30538 -12.23490 -11.98207 -11.67151 -11.62380 -11.38501 -11.27256 -11.21441 -10.95665 -10.63146 -10.57907 -8.96071 -8.30075 -6.29301 1.31353 1.35981 1.44245 2.34420 3.02512 3.06589 3.54787 3.68097 3.76628 3.93945 4.19426 4.28503 4.43055 4.45401 4.48742 4.58613 4.65062 4.72429 4.77104 4.84219 4.85871 4.93964 4.98368 5.00050 5.05472 5.10996 5.16961 5.23805 5.32643 5.35915 5.38487 5.55818 5.57342 5.62980 5.76819 5.92208 6.20440 6.49535 6.75820 6.90618 7.38519 8.85769 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021337 B = 0.008477 C = 0.006909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.951101 B = 3302.447915 C = 4051.679103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 C 0.193 3.807 4 H 0.020 0.980 5 C -0.537 4.537 6 H 0.040 0.960 7 C 0.021 3.979 8 N -0.943 5.943 9 Si 0.916 3.084 10 H -0.282 1.282 11 H -0.293 1.293 12 H -0.220 1.220 13 N -0.663 5.663 14 C 0.076 3.924 15 H 0.019 0.981 16 C -0.129 4.129 17 C -0.096 4.096 18 C -0.118 4.118 19 H 0.067 0.933 20 C -0.137 4.137 21 C 0.035 3.965 22 O -0.405 6.405 23 C 0.058 3.942 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.261 0.739 30 H 0.330 0.670 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.116 0.884 40 H 0.024 0.976 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.603 6.406 8.970 14.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.154 4.154 3 C 0.083 3.917 4 H 0.038 0.962 5 C -0.576 4.576 6 H 0.058 0.942 7 C -0.178 4.178 8 N -0.583 5.583 9 Si 0.741 3.259 10 H -0.208 1.208 11 H -0.220 1.220 12 H -0.143 1.143 13 N -0.294 5.294 14 C -0.034 4.034 15 H 0.037 0.963 16 C -0.187 4.187 17 C -0.133 4.133 18 C -0.137 4.137 19 H 0.086 0.914 20 C -0.174 4.174 21 C -0.040 4.040 22 O -0.324 6.324 23 C -0.019 4.019 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.071 0.929 39 H 0.134 0.866 40 H 0.043 0.957 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.038 6.473 8.655 14.751 hybrid contribution 1.594 -0.463 -1.234 2.068 sum -8.445 6.009 7.421 12.747 Atomic orbital electron populations 1.21628 0.94988 1.00807 1.01546 1.21808 0.96026 0.97696 0.99840 1.19346 0.90704 0.91817 0.89834 0.96177 1.22047 0.92672 1.41133 1.01771 0.94225 1.25735 0.95357 0.94561 1.02114 1.70118 1.11436 1.46666 1.30056 0.86400 0.81854 0.77808 0.79859 1.20789 1.21957 1.14312 1.60916 1.57469 1.05219 1.05794 1.21541 0.96840 0.88594 0.96413 0.96280 1.21712 0.96449 0.99918 1.00585 1.21716 0.94763 1.00700 0.96152 1.22504 0.95734 1.00083 0.95399 0.91427 1.23206 0.96404 1.01987 0.95808 1.23829 0.96734 0.99876 0.83606 1.88799 1.74230 1.49747 1.19649 1.23119 0.92831 0.91846 0.94120 0.93039 0.91158 0.94306 0.94232 0.93665 0.92991 0.85179 0.91264 0.91912 0.94347 0.90361 0.89376 0.88767 0.88476 0.92911 0.86649 0.95749 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 9.85 71.98 0.71 -3.70 16 2 C -0.12 -4.76 4.99 30.59 0.15 -4.60 16 3 C 0.19 8.54 1.40 44.17 0.06 8.60 16 4 H 0.02 0.94 6.12 -2.39 -0.01 0.92 16 5 C -0.54 -29.07 8.54 25.60 0.22 -28.85 16 6 H 0.04 2.36 7.65 -2.91 -0.02 2.34 16 7 C 0.02 1.18 5.38 84.66 0.46 1.63 16 8 N -0.94 -58.47 13.96 21.45 0.30 -58.17 16 9 Si 0.92 43.57 25.87 68.60 1.77 45.34 16 10 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 12 H -0.22 -9.47 5.31 99.48 0.53 -8.94 16 13 N -0.66 -24.51 5.32 -473.30 -2.52 -27.03 16 14 C 0.08 2.53 2.32 44.92 0.10 2.64 16 15 H 0.02 0.78 6.20 -2.39 -0.01 0.76 16 16 C -0.13 -3.64 9.45 71.98 0.68 -2.96 16 17 C -0.10 -2.54 3.97 30.59 0.12 -2.42 16 18 C -0.12 -3.50 2.93 -9.80 -0.03 -3.53 16 19 H 0.07 2.29 6.38 -2.39 -0.02 2.27 16 20 C -0.14 -3.04 6.73 31.98 0.22 -2.83 16 21 C 0.04 0.90 7.72 72.74 0.56 1.46 16 22 O -0.40 -14.00 11.52 -148.98 -1.72 -15.71 16 23 C 0.06 2.11 6.88 72.35 0.50 2.60 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 2.24 7.54 -2.39 -0.02 2.22 16 26 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 1.73 4.71 -2.39 -0.01 1.72 16 28 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 29 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 30 H 0.33 12.47 6.19 -89.69 -0.56 11.91 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.04 1.19 7.63 -2.39 -0.02 1.17 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.09 1.77 7.87 -2.38 -0.02 1.75 16 37 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.02 1.09 7.79 -2.39 -0.02 1.07 16 41 H 0.08 2.84 6.84 -2.38 -0.02 2.82 16 Total: -1.00 -63.63 311.01 1.84 -61.79 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.25 Total: 25.74 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 3.75 Total: -31.96 kcal Atomic # 7 Polarization: -82.98 SS G_CDS: -2.22 Total: -85.20 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -1.72 Total: -15.71 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.77 Total: 45.34 kcal Total: -63.63 1.84 -61.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309096006.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.696 kcal (2) G-P(sol) polarization free energy of solvation -63.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds