Wall clock time and date at job start Sun Mar 29 2020 23:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47279 * 2 1 4 4 H 1.08996 * 109.47117 * 183.32372 * 3 2 1 5 5 C 1.50700 * 109.47069 * 63.32398 * 3 2 1 6 6 H 1.08001 * 119.99877 * 245.18197 * 5 3 2 7 7 C 1.37875 * 119.99808 * 65.17866 * 5 3 2 8 8 N 1.31509 * 120.00510 * 6.25053 * 7 5 3 9 9 Si 1.86801 * 119.99612 * 186.24855 * 7 5 3 10 10 H 1.48500 * 109.47436 * 270.00117 * 9 7 5 11 11 H 1.48504 * 109.47244 * 30.00144 * 9 7 5 12 12 H 1.48500 * 109.47306 * 150.00213 * 9 7 5 13 13 N 1.46901 * 109.46890 * 303.32495 * 3 2 1 14 14 C 1.46906 * 110.99827 * 270.60493 * 13 3 2 15 15 C 1.53003 * 109.47009 * 184.90409 * 14 13 3 16 16 O 1.42898 * 110.01527 * 300.11795 * 15 14 13 17 17 C 1.42905 * 114.00314 * 304.90148 * 16 15 14 18 18 C 1.54266 * 110.03103 * 178.67993 * 15 14 13 19 19 C 1.54885 * 104.19641 * 217.10412 * 18 15 14 20 20 C 1.54896 * 102.74787 * 37.93957 * 19 18 15 21 21 C 1.53870 * 110.03410 * 61.51096 * 15 14 13 22 22 H 1.08994 * 109.47008 * 304.95673 * 1 2 3 23 23 H 1.09000 * 109.47422 * 64.95746 * 1 2 3 24 24 H 1.09007 * 109.47020 * 184.95859 * 1 2 3 25 25 H 1.09010 * 109.46928 * 239.99961 * 2 1 3 26 26 H 1.08995 * 109.47304 * 120.00516 * 2 1 3 27 27 H 0.97005 * 119.99320 * 355.34255 * 8 7 5 28 28 H 1.00901 * 110.99775 * 146.65346 * 13 3 2 29 29 H 1.09001 * 109.47232 * 304.90532 * 14 13 3 30 30 H 1.08998 * 109.47123 * 64.89997 * 14 13 3 31 31 H 1.09004 * 109.46649 * 305.10937 * 17 16 15 32 32 H 1.08993 * 109.47116 * 65.11148 * 17 16 15 33 33 H 1.09002 * 109.46859 * 185.10999 * 17 16 15 34 34 H 1.09000 * 110.48741 * 335.78142 * 18 15 14 35 35 H 1.09004 * 110.48709 * 98.42298 * 18 15 14 36 36 H 1.09004 * 110.75539 * 279.63069 * 19 18 15 37 37 H 1.09000 * 110.75828 * 156.25399 * 19 18 15 38 38 H 1.08994 * 110.48826 * 203.38005 * 20 19 18 39 39 H 1.09001 * 110.48294 * 80.73917 * 20 19 18 40 40 H 1.09000 * 110.03710 * 238.56843 * 21 15 14 41 41 H 1.09007 * 110.03067 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1283 1.4430 -0.0596 5 6 1.6061 2.1287 1.2696 6 1 0.9142 2.9568 1.2264 7 6 2.0923 1.6992 2.4862 8 7 3.0262 0.7745 2.5317 9 14 1.4245 2.4310 4.0698 10 1 2.2332 3.6183 4.4462 11 1 0.0107 2.8386 3.8692 12 1 1.4987 1.4180 5.1531 13 7 1.4858 2.1577 -1.1573 14 6 2.3606 2.0201 -2.3295 15 6 1.8161 2.8753 -3.4754 16 8 0.4959 2.4496 -3.8188 17 6 0.3976 1.0601 -4.1377 18 6 2.7437 2.7661 -4.7031 19 6 2.7359 4.1899 -5.3128 20 6 2.7213 5.0987 -4.0586 21 6 1.8019 4.3583 -3.0656 22 1 -0.3633 0.5888 0.8422 23 1 -0.3634 0.4350 -0.9310 24 1 -0.3633 -1.0239 0.0888 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.3250 0.3462 1.7142 28 1 1.3247 3.1295 -0.9385 29 1 3.3663 2.3533 -2.0735 30 1 2.3918 0.9754 -2.6388 31 1 1.1062 0.8182 -4.9299 32 1 0.6262 0.4670 -3.2523 33 1 -0.6144 0.8353 -4.4743 34 1 3.7519 2.4882 -4.3960 35 1 2.3484 2.0433 -5.4169 36 1 1.8408 4.3476 -5.9145 37 1 3.6354 4.3619 -5.9041 38 1 2.3098 6.0782 -4.3020 39 1 3.7260 5.1975 -3.6474 40 1 0.7881 4.7537 -3.1295 41 1 2.1825 4.4688 -2.0501 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309163425.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:40 Heat of formation + Delta-G solvation = -65.481107 kcal Electronic energy + Delta-G solvation = -18793.899352 eV Core-core repulsion = 16093.953053 eV Total energy + Delta-G solvation = -2699.946300 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.54520 -36.18866 -35.45614 -32.67452 -30.83115 -28.81862 -28.38248 -26.50146 -25.28717 -23.46703 -23.07982 -20.62204 -19.37616 -19.06755 -17.23143 -16.42451 -15.49327 -15.05400 -14.64946 -14.08345 -14.04282 -13.71435 -13.36362 -13.15416 -13.03199 -12.16627 -12.07324 -11.92468 -11.66137 -11.26552 -11.17943 -11.03451 -10.97762 -10.86512 -10.78273 -10.53374 -10.18324 -10.12628 -10.05030 -9.91355 -9.69257 -9.04468 -8.52295 -8.25250 -7.29233 -6.34215 -4.06363 3.42553 3.47551 3.62646 4.05830 4.51677 4.64925 4.68145 4.92236 5.21839 5.38223 5.43334 5.48523 5.50658 5.59344 5.69604 5.73654 5.85533 5.87955 5.92260 5.99894 6.03915 6.14568 6.19021 6.26372 6.33578 6.37058 6.45391 6.49172 6.65100 6.98797 7.08023 7.26582 7.51749 7.56331 7.63085 7.91734 8.12840 8.54610 8.63087 8.88864 9.65370 11.02417 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029352 B = 0.006655 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.714156 B = 4206.521336 C = 4675.971284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C 0.203 3.797 4 H -0.008 1.008 5 C -0.594 4.594 6 H 0.053 0.947 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 1.068 2.932 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.285 1.285 13 N -0.669 5.669 14 C 0.039 3.961 15 C 0.119 3.881 16 O -0.364 6.364 17 C 0.030 3.970 18 C -0.151 4.151 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.112 4.112 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.016 0.984 25 H 0.015 0.985 26 H 0.059 0.941 27 H 0.271 0.729 28 H 0.335 0.665 29 H 0.026 0.974 30 H 0.063 0.937 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.241 4.004 -13.563 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.144 4.144 3 C 0.094 3.906 4 H 0.009 0.991 5 C -0.633 4.633 6 H 0.072 0.928 7 C -0.182 4.182 8 N -0.550 5.550 9 Si 0.897 3.103 10 H -0.216 1.216 11 H -0.214 1.214 12 H -0.211 1.211 13 N -0.301 5.301 14 C -0.092 4.092 15 C 0.079 3.921 16 O -0.283 6.283 17 C -0.066 4.066 18 C -0.189 4.189 19 C -0.156 4.156 20 C -0.161 4.161 21 C -0.150 4.150 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.154 0.846 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.637 3.584 -12.078 12.705 hybrid contribution 0.849 0.200 -1.414 1.661 sum -0.788 3.785 -13.492 14.035 Atomic orbital electron populations 1.21423 0.96477 0.97726 1.02045 1.21507 0.96269 0.98426 0.98211 1.19263 0.91888 0.91252 0.88158 0.99093 1.22034 1.30765 1.18525 0.91928 0.92847 1.25704 0.94296 0.96326 1.01901 1.70767 1.25984 1.25764 1.32444 0.83557 0.75661 0.75767 0.75323 1.21642 1.21366 1.21053 1.60555 1.46757 1.17948 1.04867 1.22558 0.94707 0.99295 0.92619 1.22165 0.83035 0.94513 0.92422 1.87926 1.27757 1.24205 1.88423 1.22700 1.00946 0.83667 0.99325 1.22978 1.00159 0.97848 0.97924 1.22420 1.01365 0.94616 0.97230 1.22358 0.99731 0.98433 0.95555 1.22133 1.00967 0.92569 0.99342 0.92261 0.93196 0.96496 0.96618 0.92266 0.91723 0.84603 0.95573 0.91851 0.95014 0.92772 0.90585 0.91002 0.91112 0.91391 0.91894 0.91580 0.91682 0.90329 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.65 9.51 37.16 0.35 -2.29 16 2 C -0.11 -2.51 5.52 -26.73 -0.15 -2.66 16 3 C 0.20 5.03 1.95 -68.86 -0.13 4.89 16 4 H -0.01 -0.23 7.16 -51.93 -0.37 -0.60 16 5 C -0.59 -16.20 7.31 -34.44 -0.25 -16.46 16 6 H 0.05 1.47 7.61 -52.49 -0.40 1.07 16 7 C 0.02 0.62 5.23 -17.82 -0.09 0.53 16 8 N -0.91 -27.11 13.08 55.43 0.73 -26.39 16 9 Si 1.07 25.11 29.91 -169.99 -5.08 20.03 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.67 -14.17 5.42 -107.95 -0.59 -14.76 16 14 C 0.04 0.70 3.75 -3.82 -0.01 0.68 16 15 C 0.12 1.82 0.77 -89.50 -0.07 1.75 16 16 O -0.36 -6.02 10.16 -35.23 -0.36 -6.38 16 17 C 0.03 0.43 10.14 101.05 1.02 1.46 16 18 C -0.15 -1.93 5.88 -25.07 -0.15 -2.08 16 19 C -0.12 -1.33 6.91 -24.74 -0.17 -1.51 16 20 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 21 C -0.11 -1.63 5.68 -25.62 -0.15 -1.77 16 22 H 0.06 1.42 7.17 -51.93 -0.37 1.05 16 23 H 0.05 1.07 7.69 -51.93 -0.40 0.67 16 24 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.02 0.34 7.96 -51.92 -0.41 -0.07 16 26 H 0.06 1.55 6.12 -51.93 -0.32 1.23 16 27 H 0.27 8.03 5.78 -40.82 -0.24 7.80 16 28 H 0.33 7.20 6.36 -39.29 -0.25 6.95 16 29 H 0.03 0.49 7.93 -51.93 -0.41 0.08 16 30 H 0.06 1.16 6.48 -51.93 -0.34 0.82 16 31 H 0.03 0.40 6.27 -51.93 -0.33 0.07 16 32 H 0.05 0.88 6.69 -51.93 -0.35 0.53 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.90 7.85 -51.93 -0.41 0.49 16 35 H 0.07 0.86 6.19 -51.93 -0.32 0.54 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.16 7.95 -51.93 -0.41 0.75 16 41 H 0.07 1.18 6.61 -51.92 -0.34 0.83 16 LS Contribution 310.01 15.07 4.67 4.67 Total: -1.00 -29.12 310.01 -7.59 -36.71 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -7.00 Total: 5.19 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 0.03 Total: -19.08 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.14 Total: -41.14 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.36 Total: -6.38 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.12 -7.59 -36.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309163425.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.766 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds