Wall clock time and date at job start Sun Mar 29 2020 23:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47279 * 2 1 4 4 H 1.08996 * 109.47117 * 183.32372 * 3 2 1 5 5 C 1.50700 * 109.47069 * 63.32398 * 3 2 1 6 6 H 1.08001 * 119.99877 * 245.18197 * 5 3 2 7 7 C 1.37875 * 119.99808 * 65.17866 * 5 3 2 8 8 N 1.31509 * 120.00510 * 6.25053 * 7 5 3 9 9 Si 1.86801 * 119.99612 * 186.24855 * 7 5 3 10 10 H 1.48500 * 109.47436 * 270.00117 * 9 7 5 11 11 H 1.48504 * 109.47244 * 30.00144 * 9 7 5 12 12 H 1.48500 * 109.47306 * 150.00213 * 9 7 5 13 13 N 1.46901 * 109.46890 * 303.32495 * 3 2 1 14 14 C 1.46906 * 110.99827 * 270.60493 * 13 3 2 15 15 C 1.53003 * 109.47009 * 184.90409 * 14 13 3 16 16 O 1.42898 * 110.01527 * 300.11795 * 15 14 13 17 17 C 1.42905 * 114.00314 * 304.90148 * 16 15 14 18 18 C 1.54266 * 110.03103 * 178.67993 * 15 14 13 19 19 C 1.54885 * 104.19641 * 217.10412 * 18 15 14 20 20 C 1.54896 * 102.74787 * 37.93957 * 19 18 15 21 21 C 1.53870 * 110.03410 * 61.51096 * 15 14 13 22 22 H 1.08994 * 109.47008 * 304.95673 * 1 2 3 23 23 H 1.09000 * 109.47422 * 64.95746 * 1 2 3 24 24 H 1.09007 * 109.47020 * 184.95859 * 1 2 3 25 25 H 1.09010 * 109.46928 * 239.99961 * 2 1 3 26 26 H 1.08995 * 109.47304 * 120.00516 * 2 1 3 27 27 H 0.97005 * 119.99320 * 355.34255 * 8 7 5 28 28 H 1.00901 * 110.99775 * 146.65346 * 13 3 2 29 29 H 1.09001 * 109.47232 * 304.90532 * 14 13 3 30 30 H 1.08998 * 109.47123 * 64.89997 * 14 13 3 31 31 H 1.09004 * 109.46649 * 305.10937 * 17 16 15 32 32 H 1.08993 * 109.47116 * 65.11148 * 17 16 15 33 33 H 1.09002 * 109.46859 * 185.10999 * 17 16 15 34 34 H 1.09000 * 110.48741 * 335.78142 * 18 15 14 35 35 H 1.09004 * 110.48709 * 98.42298 * 18 15 14 36 36 H 1.09004 * 110.75539 * 279.63069 * 19 18 15 37 37 H 1.09000 * 110.75828 * 156.25399 * 19 18 15 38 38 H 1.08994 * 110.48826 * 203.38005 * 20 19 18 39 39 H 1.09001 * 110.48294 * 80.73917 * 20 19 18 40 40 H 1.09000 * 110.03710 * 238.56843 * 21 15 14 41 41 H 1.09007 * 110.03067 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1283 1.4430 -0.0596 5 6 1.6061 2.1287 1.2696 6 1 0.9142 2.9568 1.2264 7 6 2.0923 1.6992 2.4862 8 7 3.0262 0.7745 2.5317 9 14 1.4245 2.4310 4.0698 10 1 2.2332 3.6183 4.4462 11 1 0.0107 2.8386 3.8692 12 1 1.4987 1.4180 5.1531 13 7 1.4858 2.1577 -1.1573 14 6 2.3606 2.0201 -2.3295 15 6 1.8161 2.8753 -3.4754 16 8 0.4959 2.4496 -3.8188 17 6 0.3976 1.0601 -4.1377 18 6 2.7437 2.7661 -4.7031 19 6 2.7359 4.1899 -5.3128 20 6 2.7213 5.0987 -4.0586 21 6 1.8019 4.3583 -3.0656 22 1 -0.3633 0.5888 0.8422 23 1 -0.3634 0.4350 -0.9310 24 1 -0.3633 -1.0239 0.0888 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 3.3250 0.3462 1.7142 28 1 1.3247 3.1295 -0.9385 29 1 3.3663 2.3533 -2.0735 30 1 2.3918 0.9754 -2.6388 31 1 1.1062 0.8182 -4.9299 32 1 0.6262 0.4670 -3.2523 33 1 -0.6144 0.8353 -4.4743 34 1 3.7519 2.4882 -4.3960 35 1 2.3484 2.0433 -5.4169 36 1 1.8408 4.3476 -5.9145 37 1 3.6354 4.3619 -5.9041 38 1 2.3098 6.0782 -4.3020 39 1 3.7260 5.1975 -3.6474 40 1 0.7881 4.7537 -3.1295 41 1 2.1825 4.4688 -2.0501 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309163425.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:39 Heat of formation + Delta-G solvation = -83.478897 kcal Electronic energy + Delta-G solvation = -18794.679795 eV Core-core repulsion = 16093.953053 eV Total energy + Delta-G solvation = -2700.726742 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.77889 -38.05570 -36.57082 -34.55186 -32.71728 -29.88520 -29.80820 -27.92470 -26.91139 -25.43456 -24.56038 -21.69929 -21.11758 -20.43816 -19.14067 -17.73756 -16.75225 -16.33394 -16.20982 -15.75966 -15.60018 -15.24859 -15.13483 -14.65497 -14.11856 -13.88554 -13.72030 -13.55207 -13.13298 -12.78458 -12.66247 -12.42989 -12.37243 -12.07936 -11.96637 -11.95404 -11.91220 -11.80966 -11.58603 -11.47378 -11.29914 -10.63825 -10.45963 -10.21512 -9.10149 -8.58420 -6.31234 1.52272 1.60864 1.78290 2.55616 2.86109 3.20986 3.49869 3.59681 3.65613 3.96988 4.24681 4.27227 4.37398 4.40099 4.51646 4.52182 4.55184 4.62278 4.64022 4.73456 4.79775 4.84966 4.95251 4.95672 5.01988 5.03007 5.07946 5.16863 5.18770 5.31503 5.35691 5.44038 5.54260 5.68055 5.87726 6.07561 6.39765 6.49615 6.61331 6.83195 7.48963 8.78256 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029352 B = 0.006655 C = 0.005987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.714156 B = 4206.521336 C = 4675.971284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.100 4.100 3 C 0.207 3.793 4 H -0.043 1.043 5 C -0.599 4.599 6 H 0.049 0.951 7 C -0.025 4.025 8 N -0.937 5.937 9 Si 1.112 2.888 10 H -0.276 1.276 11 H -0.272 1.272 12 H -0.285 1.285 13 N -0.663 5.663 14 C 0.041 3.959 15 C 0.120 3.880 16 O -0.381 6.381 17 C 0.028 3.972 18 C -0.148 4.148 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.115 4.115 22 H 0.037 0.963 23 H 0.057 0.943 24 H 0.039 0.961 25 H 0.029 0.971 26 H 0.032 0.968 27 H 0.259 0.741 28 H 0.332 0.668 29 H 0.015 0.985 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.899 4.762 -14.989 15.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.139 4.139 3 C 0.098 3.902 4 H -0.025 1.025 5 C -0.637 4.637 6 H 0.067 0.933 7 C -0.224 4.224 8 N -0.575 5.575 9 Si 0.935 3.065 10 H -0.202 1.202 11 H -0.197 1.197 12 H -0.211 1.211 13 N -0.294 5.294 14 C -0.089 4.089 15 C 0.080 3.920 16 O -0.300 6.300 17 C -0.068 4.068 18 C -0.186 4.186 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.153 4.153 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.150 0.850 29 H 0.034 0.966 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.298 4.348 -13.536 14.402 hybrid contribution 1.058 -0.056 -1.026 1.475 sum -1.240 4.292 -14.562 15.232 Atomic orbital electron populations 1.21287 0.94861 0.98868 1.01398 1.21390 0.97540 0.97423 0.97508 1.19099 0.89885 0.92268 0.88914 1.02529 1.22303 1.30100 1.18247 0.93088 0.93323 1.27039 0.93904 0.96116 1.05330 1.70879 1.27591 1.27187 1.31848 0.82987 0.76076 0.75525 0.71922 1.20198 1.19701 1.21094 1.60511 1.47065 1.17390 1.04429 1.22614 0.93820 0.99950 0.92478 1.22203 0.83280 0.94150 0.92351 1.87910 1.28286 1.25294 1.88468 1.22794 1.02669 0.82358 0.98978 1.22961 0.99413 0.99480 0.96770 1.22414 1.02678 0.92877 0.96943 1.22359 0.99190 0.99052 0.95041 1.22148 1.01370 0.92564 0.99214 0.94415 0.92430 0.94171 0.95263 0.94929 0.93000 0.84952 0.96640 0.92064 0.92956 0.94997 0.88864 0.90880 0.90155 0.90925 0.89732 0.89922 0.91450 0.90768 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.67 9.51 71.98 0.68 -3.99 16 2 C -0.10 -4.82 5.52 30.59 0.17 -4.65 16 3 C 0.21 10.55 1.95 44.17 0.09 10.64 16 4 H -0.04 -2.43 7.16 -2.39 -0.02 -2.45 16 5 C -0.60 -33.23 7.31 25.60 0.19 -33.04 16 6 H 0.05 2.70 7.61 -2.91 -0.02 2.68 16 7 C -0.03 -1.43 5.23 84.65 0.44 -0.98 16 8 N -0.94 -56.92 13.08 21.45 0.28 -56.64 16 9 Si 1.11 50.50 29.91 68.60 2.05 52.55 16 10 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 11 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 12 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 13 N -0.66 -28.44 5.42 -495.43 -2.69 -31.13 16 14 C 0.04 1.51 3.75 86.30 0.32 1.83 16 15 C 0.12 3.56 0.77 -10.07 -0.01 3.55 16 16 O -0.38 -12.01 10.16 -148.98 -1.51 -13.53 16 17 C 0.03 0.76 10.14 113.37 1.15 1.91 16 18 C -0.15 -3.46 5.88 31.67 0.19 -3.28 16 19 C -0.11 -2.17 6.91 31.89 0.22 -1.95 16 20 C -0.12 -2.55 6.83 31.67 0.22 -2.33 16 21 C -0.12 -3.24 5.68 31.32 0.18 -3.07 16 22 H 0.04 1.79 7.17 -2.39 -0.02 1.77 16 23 H 0.06 2.40 7.69 -2.39 -0.02 2.39 16 24 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 25 H 0.03 1.30 7.96 -2.38 -0.02 1.28 16 26 H 0.03 1.74 6.12 -2.39 -0.01 1.72 16 27 H 0.26 15.96 5.78 -92.70 -0.54 15.42 16 28 H 0.33 14.54 6.36 -89.69 -0.57 13.97 16 29 H 0.02 0.60 7.93 -2.39 -0.02 0.58 16 30 H 0.06 2.24 6.48 -2.39 -0.02 2.23 16 31 H 0.05 1.18 6.27 -2.39 -0.01 1.17 16 32 H 0.03 0.99 6.69 -2.39 -0.02 0.98 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.07 1.69 7.85 -2.39 -0.02 1.67 16 35 H 0.08 1.73 6.19 -2.38 -0.01 1.71 16 36 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 2.13 7.95 -2.39 -0.02 2.11 16 41 H 0.06 1.77 6.61 -2.38 -0.02 1.75 16 Total: -1.00 -62.79 310.01 2.62 -60.17 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.66 Total: 23.93 kcal Atomic # 6 Polarization: -39.20 SS G_CDS: 3.84 Total: -35.36 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -2.41 Total: -87.77 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -1.51 Total: -13.53 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.05 Total: 52.55 kcal Total: -62.79 2.62 -60.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309163425.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.309 kcal (2) G-P(sol) polarization free energy of solvation -62.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds