Wall clock time and date at job start Sun Mar 29 2020 22:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46796 * 2 1 4 4 H 1.08990 * 109.47270 * 302.44354 * 3 2 1 5 5 N 1.46894 * 109.47489 * 62.45049 * 3 2 1 6 6 C 1.46908 * 111.00143 * 65.42808 * 5 3 2 7 7 C 1.52997 * 109.47127 * 184.39917 * 6 5 3 8 8 C 1.50699 * 109.47382 * 180.02562 * 7 6 5 9 9 H 1.08011 * 119.99486 * 0.02562 * 8 7 6 10 10 C 1.37869 * 120.00817 * 180.02562 * 8 7 6 11 11 N 1.31523 * 119.99380 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00527 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46787 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47087 * 120.00013 * 12 10 8 15 15 H 1.48502 * 109.46904 * 240.00093 * 12 10 8 16 16 C 1.53000 * 109.46852 * 182.44987 * 3 2 1 17 17 C 1.53180 * 109.54360 * 180.02562 * 16 3 2 18 18 C 1.53092 * 109.16225 * 183.15348 * 17 16 3 19 19 O 1.42909 * 109.41791 * 57.60319 * 18 17 16 20 20 C 1.42901 * 114.09847 * 298.84328 * 19 18 17 21 21 C 1.53092 * 109.41217 * 61.15665 * 20 19 18 22 22 H 1.08995 * 109.47177 * 54.58606 * 1 2 3 23 23 H 1.09000 * 109.47214 * 174.58309 * 1 2 3 24 24 H 1.08997 * 109.47489 * 294.58039 * 1 2 3 25 25 H 1.08992 * 109.47312 * 239.99668 * 2 1 3 26 26 H 1.09001 * 109.46889 * 119.99574 * 2 1 3 27 27 H 1.00901 * 111.00560 * 189.38358 * 5 3 2 28 28 H 1.08997 * 109.47290 * 304.40334 * 6 5 3 29 29 H 1.09003 * 109.46698 * 64.40545 * 6 5 3 30 30 H 1.08997 * 109.47376 * 300.00365 * 7 6 5 31 31 H 1.09003 * 109.46819 * 60.00702 * 7 6 5 32 32 H 0.97005 * 119.99860 * 179.97438 * 11 10 8 33 33 H 1.09000 * 109.61791 * 300.22189 * 16 3 2 34 34 H 1.08988 * 109.52476 * 63.24713 * 17 16 3 35 35 H 1.08999 * 109.56898 * 303.08688 * 17 16 3 36 36 H 1.08996 * 109.48342 * 177.58968 * 18 17 16 37 37 H 1.08999 * 109.48348 * 297.62512 * 18 17 16 38 38 H 1.08995 * 109.48106 * 301.17302 * 20 19 18 39 39 H 1.08997 * 109.47834 * 181.13616 * 20 19 18 40 40 H 1.09005 * 109.52118 * 182.48233 * 21 20 19 41 41 H 1.08998 * 109.52355 * 62.30126 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6413 1.9688 -0.8672 5 7 1.5992 2.1177 1.2279 6 6 2.2218 1.5136 2.4134 7 6 1.6570 2.1683 3.6756 8 6 2.2961 1.5490 4.8918 9 1 3.0319 0.7669 4.7760 10 6 1.9417 1.9808 6.1523 11 7 1.0453 2.9329 6.2933 12 14 2.7344 1.2135 7.6597 13 1 3.7027 0.1715 7.2335 14 1 3.4446 2.2631 8.4338 15 1 1.6855 0.5957 8.5102 16 6 3.5687 1.4430 -0.0617 17 6 4.0811 2.8865 -0.0611 18 6 5.6055 2.8787 -0.2023 19 8 5.9679 2.1922 -1.4022 20 6 5.5563 0.8242 -1.4388 21 6 4.0299 0.7496 -1.3473 22 1 -0.3633 0.5955 -0.8375 23 1 -0.3634 -1.0231 -0.0970 24 1 -0.3634 0.4275 0.9345 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.7895 3.1077 1.1845 28 1 2.0077 0.4450 2.4315 29 1 3.3002 1.6675 2.3757 30 1 1.8711 3.2369 3.6575 31 1 0.5786 2.0144 3.7133 32 1 0.7956 3.2364 7.1801 33 1 3.9700 0.9137 0.8026 34 1 3.8046 3.3708 0.8753 35 1 3.6407 3.4306 -0.8966 36 1 5.9718 3.9043 -0.2456 37 1 6.0474 2.3705 0.6547 38 1 5.9975 0.2892 -0.5978 39 1 5.8871 0.3700 -2.3727 40 1 3.7166 -0.2944 -1.3306 41 1 3.5884 1.2495 -2.2094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309180749.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:18 Heat of formation + Delta-G solvation = -94.599235 kcal Electronic energy + Delta-G solvation = -18294.844998 eV Core-core repulsion = 15593.636042 eV Total energy + Delta-G solvation = -2701.208956 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.85240 -38.54259 -35.61957 -33.95481 -33.37449 -31.97254 -30.70012 -27.61039 -26.01260 -24.76409 -23.79979 -22.97583 -21.48590 -20.18468 -18.49325 -17.49372 -17.09687 -16.92771 -16.40038 -15.76835 -15.65685 -15.36579 -14.92030 -14.59225 -14.42128 -14.24300 -13.85579 -13.39220 -13.25518 -13.09059 -12.89148 -12.45660 -12.42582 -12.28387 -12.14145 -11.94818 -11.86379 -11.54137 -11.43828 -11.23114 -11.13206 -11.04560 -10.58928 -10.50892 -9.10538 -8.20800 -6.31908 1.38618 1.39075 1.52052 2.39397 2.94744 3.12726 3.41138 3.65266 3.78925 3.95219 4.07883 4.18986 4.29227 4.38009 4.42184 4.53885 4.56295 4.61621 4.68935 4.74318 4.76867 4.86245 4.90857 4.95948 5.04467 5.09782 5.14953 5.19480 5.25347 5.33618 5.45122 5.49869 5.57986 5.70984 5.82499 6.17802 6.23567 6.35288 6.62152 6.86419 7.37465 8.91525 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022567 B = 0.005894 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.460559 B = 4749.541689 C = 5428.659210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.115 4.115 3 C 0.098 3.902 4 H 0.087 0.913 5 N -0.686 5.686 6 C 0.088 3.912 7 C 0.033 3.967 8 C -0.541 4.541 9 H 0.058 0.942 10 C 0.001 3.999 11 N -0.932 5.932 12 Si 0.964 3.036 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.278 1.278 16 C -0.121 4.121 17 C -0.149 4.149 18 C 0.062 3.938 19 O -0.400 6.400 20 C 0.055 3.945 21 C -0.140 4.140 22 H 0.057 0.943 23 H 0.054 0.946 24 H 0.037 0.963 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.336 0.664 28 H 0.056 0.944 29 H 0.019 0.981 30 H -0.012 1.012 31 H -0.010 1.010 32 H 0.263 0.737 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.495 -4.477 -16.590 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.012 4.012 4 H 0.105 0.895 5 N -0.316 5.316 6 C -0.041 4.041 7 C -0.004 4.004 8 C -0.579 4.579 9 H 0.076 0.924 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.788 3.212 13 H -0.186 1.186 14 H -0.203 1.203 15 H -0.204 1.204 16 C -0.142 4.142 17 C -0.187 4.187 18 C -0.014 4.014 19 O -0.319 6.319 20 C -0.022 4.022 21 C -0.178 4.178 22 H 0.077 0.923 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.104 0.896 26 H 0.064 0.936 27 H 0.154 0.846 28 H 0.074 0.926 29 H 0.037 0.963 30 H 0.006 0.994 31 H 0.009 0.991 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.129 0.871 40 H 0.106 0.894 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.910 -4.662 -16.559 18.190 hybrid contribution 0.803 0.215 1.450 1.671 sum 6.713 -4.447 -15.109 17.121 Atomic orbital electron populations 1.21570 0.95547 1.00868 1.01492 1.21626 0.96554 0.95358 1.01726 1.21691 0.91352 0.95813 0.92356 0.89532 1.60619 1.61846 1.07218 1.01917 1.21724 0.94775 0.98198 0.89379 1.18904 0.94979 0.94374 0.92160 1.21630 1.23530 1.20468 0.92299 0.92422 1.25950 0.95631 0.95515 1.02576 1.70121 1.33263 1.29997 1.23804 0.85422 0.78471 0.78524 0.78766 1.18637 1.20287 1.20353 1.21896 0.97573 0.96072 0.98623 1.22180 0.96958 0.97194 1.02322 1.22569 0.94007 0.97926 0.86913 1.87878 1.79340 1.24838 1.39837 1.22757 0.94223 0.82340 1.02861 1.22196 0.96294 1.02030 0.97252 0.92344 0.92686 0.94390 0.89619 0.93616 0.84577 0.92593 0.96257 0.99355 0.99127 0.92798 0.92458 0.92183 0.90466 0.87883 0.93843 0.93552 0.87059 0.89361 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.71 71.98 0.70 -2.88 16 2 C -0.12 -2.89 5.01 30.59 0.15 -2.74 16 3 C 0.10 2.56 2.14 44.92 0.10 2.66 16 4 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 5 N -0.69 -23.45 5.65 -491.58 -2.78 -26.23 16 6 C 0.09 3.65 4.67 86.30 0.40 4.05 16 7 C 0.03 1.79 5.27 29.85 0.16 1.95 16 8 C -0.54 -31.11 9.11 25.60 0.23 -30.87 16 9 H 0.06 3.19 7.74 -2.90 -0.02 3.17 16 10 C 0.00 0.07 5.46 84.65 0.46 0.53 16 11 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 12 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 13 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 C -0.12 -2.96 1.32 -10.67 -0.01 -2.97 16 17 C -0.15 -3.62 4.94 30.69 0.15 -3.47 16 18 C 0.06 1.46 6.84 72.01 0.49 1.95 16 19 O -0.40 -9.64 10.77 -148.98 -1.60 -11.24 16 20 C 0.05 1.06 6.84 72.01 0.49 1.55 16 21 C -0.14 -2.66 4.98 30.68 0.15 -2.51 16 22 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.04 1.23 7.84 -2.39 -0.02 1.21 16 25 H 0.09 1.68 6.39 -2.39 -0.02 1.66 16 26 H 0.05 1.33 6.34 -2.39 -0.02 1.31 16 27 H 0.34 11.29 7.55 -89.69 -0.68 10.61 16 28 H 0.06 2.36 6.21 -2.39 -0.01 2.35 16 29 H 0.02 0.79 6.18 -2.39 -0.01 0.78 16 30 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 32 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 33 H 0.06 1.65 6.45 -2.39 -0.02 1.64 16 34 H 0.06 1.66 6.76 -2.39 -0.02 1.64 16 35 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.09 1.46 6.58 -2.38 -0.02 1.44 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -64.54 312.76 1.72 -62.82 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: 0.31 Total: 17.89 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: 3.48 Total: -32.75 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -2.49 Total: -83.33 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -1.60 Total: -11.24 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -64.54 1.72 -62.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309180749.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.778 kcal (2) G-P(sol) polarization free energy of solvation -64.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds