Wall clock time and date at job start Sun Mar 29 2020 22:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46600 * 2 1 4 4 H 1.09002 * 109.46374 * 183.32845 * 3 2 1 5 5 N 1.46900 * 109.47158 * 63.32365 * 3 2 1 6 6 C 1.46903 * 110.99494 * 84.37821 * 5 3 2 7 7 C 1.53007 * 109.46578 * 174.73674 * 6 5 3 8 8 C 1.50702 * 109.46819 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99841 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99876 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00026 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99836 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46926 * 90.00392 * 12 10 8 14 14 H 1.48500 * 109.46786 * 210.00112 * 12 10 8 15 15 H 1.48501 * 109.47185 * 330.00094 * 12 10 8 16 16 C 1.52998 * 109.46947 * 303.32127 * 3 2 1 17 17 C 1.53174 * 109.54826 * 299.82774 * 16 3 2 18 18 C 1.53106 * 109.15794 * 183.24131 * 17 16 3 19 19 O 1.42902 * 109.48577 * 57.47872 * 18 17 16 20 20 C 1.42902 * 114.09380 * 298.88080 * 19 18 17 21 21 C 1.53100 * 109.41205 * 61.16620 * 20 19 18 22 22 H 1.09001 * 109.47523 * 63.87670 * 1 2 3 23 23 H 1.08996 * 109.47423 * 303.87149 * 1 2 3 24 24 H 1.09000 * 109.47176 * 183.87276 * 1 2 3 25 25 H 1.08999 * 109.46562 * 119.99451 * 2 1 3 26 26 H 1.08994 * 109.47265 * 240.00203 * 2 1 3 27 27 H 1.00892 * 111.00072 * 320.42146 * 5 3 2 28 28 H 1.08994 * 109.46864 * 294.73005 * 6 5 3 29 29 H 1.08994 * 109.47486 * 54.73692 * 6 5 3 30 30 H 1.09004 * 109.46869 * 299.99833 * 7 6 5 31 31 H 1.08994 * 109.47198 * 59.99841 * 7 6 5 32 32 H 0.96999 * 120.00556 * 180.02562 * 11 10 8 33 33 H 1.09003 * 109.54441 * 60.00724 * 16 3 2 34 34 H 1.08999 * 109.52062 * 303.06133 * 17 16 3 35 35 H 1.08995 * 109.52211 * 63.24535 * 17 16 3 36 36 H 1.08998 * 109.40483 * 297.48963 * 18 17 16 37 37 H 1.09007 * 109.48024 * 177.49714 * 18 17 16 38 38 H 1.08995 * 109.48608 * 301.18240 * 20 19 18 39 39 H 1.09004 * 109.48344 * 181.14446 * 20 19 18 40 40 H 1.09002 * 109.52068 * 182.48640 * 21 20 19 41 41 H 1.08996 * 109.57627 * 62.32587 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1283 1.4432 -0.0597 5 7 1.6169 2.1115 1.2376 6 6 2.5540 1.8320 2.3338 7 6 2.1554 2.6471 3.5657 8 6 3.1164 2.3600 4.6905 9 1 3.9302 1.6659 4.5414 10 6 2.9571 2.9842 5.9096 11 7 3.7960 2.7340 6.8910 12 14 1.5506 4.1863 6.1667 13 1 0.3588 3.4543 6.6658 14 1 1.9529 5.2134 7.1608 15 1 1.2221 4.8468 4.8778 16 6 1.4628 2.1875 -1.2054 17 6 1.9064 1.4939 -2.4970 18 6 1.3920 2.2919 -3.6981 19 8 1.8809 3.6327 -3.6243 20 6 1.4569 4.3450 -2.4603 21 6 1.9758 3.6308 -1.2095 22 1 -0.3634 0.4525 -0.9227 23 1 -0.3634 0.5727 0.8532 24 1 -0.3633 -1.0253 0.0694 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 0.6766 1.8457 1.4890 28 1 2.5237 0.7697 2.5757 29 1 3.5635 2.1063 2.0277 30 1 2.1856 3.7096 3.3238 31 1 1.1459 2.3728 3.8718 32 1 3.6838 3.1728 7.7487 33 1 0.3743 2.1876 -1.1469 34 1 2.9950 1.4485 -2.5306 35 1 1.4978 0.4839 -2.5269 36 1 0.3021 2.3012 -3.6868 37 1 1.7423 1.8276 -4.6200 38 1 0.3679 4.3812 -2.4328 39 1 1.8538 5.3598 -2.4904 40 1 1.6166 4.1476 -0.3195 41 1 3.0658 3.6299 -1.2151 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309180750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:20 Heat of formation + Delta-G solvation = -73.197979 kcal Electronic energy + Delta-G solvation = -18094.367751 eV Core-core repulsion = 15394.086823 eV Total energy + Delta-G solvation = -2700.280928 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.74860 -37.48105 -34.17510 -32.60030 -31.89857 -30.99685 -29.31483 -26.49310 -24.16639 -23.89595 -23.18470 -20.80405 -20.24323 -19.31430 -16.78055 -16.31979 -16.02750 -15.47486 -14.98169 -14.61285 -14.59661 -14.08234 -13.87470 -13.43246 -13.11688 -12.92488 -12.47089 -12.27013 -12.15802 -11.73445 -11.53959 -11.38053 -11.28539 -10.99502 -10.79998 -10.50614 -10.48049 -10.24428 -10.02334 -9.89732 -9.70847 -9.39674 -9.21530 -8.52964 -7.86790 -6.03740 -4.01944 3.32188 3.39791 3.45718 3.84026 4.44447 4.46859 4.66751 4.87264 4.98022 5.01993 5.10180 5.14454 5.25504 5.26617 5.31066 5.41418 5.46689 5.61458 5.69461 5.76174 5.80586 5.85491 5.93878 5.98367 6.07038 6.17467 6.19606 6.26172 6.39813 6.42688 6.49366 6.79924 7.15303 7.17147 7.40061 7.64247 7.78651 7.93973 8.54149 9.00518 9.58875 11.09720 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.005093 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.640222 B = 5496.188455 C = 5928.540073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.157 4.157 3 C 0.092 3.908 4 H 0.075 0.925 5 N -0.687 5.687 6 C 0.075 3.925 7 C -0.008 4.008 8 C -0.521 4.521 9 H 0.070 0.930 10 C 0.067 3.933 11 N -0.905 5.905 12 Si 0.881 3.119 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.263 1.263 16 C -0.076 4.076 17 C -0.153 4.153 18 C 0.063 3.937 19 O -0.388 6.388 20 C 0.059 3.941 21 C -0.141 4.141 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.334 0.666 28 H 0.021 0.979 29 H 0.062 0.938 30 H 0.024 0.976 31 H 0.007 0.993 32 H 0.263 0.737 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.384 -2.222 -19.678 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.196 4.196 3 C -0.019 4.019 4 H 0.093 0.907 5 N -0.318 5.318 6 C -0.054 4.054 7 C -0.046 4.046 8 C -0.559 4.559 9 H 0.088 0.912 10 C -0.134 4.134 11 N -0.544 5.544 12 Si 0.709 3.291 13 H -0.204 1.204 14 H -0.215 1.215 15 H -0.188 1.188 16 C -0.095 4.095 17 C -0.191 4.191 18 C -0.014 4.014 19 O -0.307 6.307 20 C -0.018 4.018 21 C -0.179 4.179 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.154 0.846 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.043 0.957 31 H 0.026 0.974 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.921 -1.482 -19.776 21.005 hybrid contribution -1.033 -0.567 0.841 1.448 sum -7.954 -2.049 -18.935 20.640 Atomic orbital electron populations 1.21814 0.95972 1.01378 1.01881 1.22225 0.96480 0.98719 1.02177 1.21576 0.99417 0.90326 0.90556 0.90723 1.60702 1.06277 1.61070 1.03798 1.21959 0.95172 0.97591 0.90645 1.19523 0.96354 0.96150 0.92569 1.21087 1.13116 1.26552 0.95185 0.91202 1.25004 0.96079 0.96445 0.95874 1.69913 1.37218 1.43794 1.03448 0.86751 0.82695 0.81403 0.78295 1.20439 1.21455 1.18765 1.21167 1.00276 0.94933 0.93114 1.22296 1.02133 0.99488 0.95180 1.22527 0.97670 0.82936 0.98273 1.87901 1.74585 1.25102 1.43105 1.22665 0.98307 0.95675 0.85142 1.22106 1.01550 0.95848 0.98369 0.92515 0.92435 0.93036 0.91834 0.91784 0.84650 0.96120 0.91915 0.95738 0.97439 0.92749 0.91101 0.91142 0.90929 0.93595 0.89362 0.93584 0.89172 0.89216 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.21 37.16 0.34 -1.28 16 2 C -0.16 -1.85 5.35 -26.73 -0.14 -1.99 16 3 C 0.09 1.21 1.92 -67.71 -0.13 1.08 16 4 H 0.07 1.07 7.73 -51.93 -0.40 0.67 16 5 N -0.69 -11.03 5.53 -106.72 -0.59 -11.62 16 6 C 0.07 1.48 5.44 -3.82 -0.02 1.46 16 7 C -0.01 -0.20 4.35 -27.88 -0.12 -0.32 16 8 C -0.52 -14.98 9.66 -34.44 -0.33 -15.31 16 9 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 10 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 11 N -0.90 -28.15 13.96 55.43 0.77 -27.37 16 12 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 15 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 16 C -0.08 -0.87 1.60 -90.44 -0.14 -1.01 16 17 C -0.15 -1.52 4.98 -26.59 -0.13 -1.65 16 18 C 0.06 0.61 6.84 37.21 0.25 0.86 16 19 O -0.39 -4.73 10.77 -35.23 -0.38 -5.11 16 20 C 0.06 0.65 6.84 37.21 0.25 0.91 16 21 C -0.14 -1.74 5.22 -26.59 -0.14 -1.88 16 22 H 0.06 0.54 6.60 -51.93 -0.34 0.20 16 23 H 0.06 0.66 6.23 -51.93 -0.32 0.33 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.85 7.43 -51.93 -0.39 0.46 16 26 H 0.06 0.67 6.70 -51.93 -0.35 0.32 16 27 H 0.33 5.15 6.47 -39.30 -0.25 4.90 16 28 H 0.02 0.41 7.47 -51.93 -0.39 0.03 16 29 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 30 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 31 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 33 H 0.07 0.80 6.46 -51.93 -0.34 0.47 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.63 6.70 -51.93 -0.35 0.29 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.09 1.23 7.72 -51.93 -0.40 0.83 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 310.85 15.07 4.68 4.68 Total: -1.00 -30.51 310.85 -7.84 -38.35 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -7.25 Total: 1.00 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -0.41 Total: -17.25 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.18 Total: -38.99 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.38 Total: -5.11 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.51 -7.84 -38.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309180750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.844 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds