Wall clock time and date at job start Sun Mar 29 2020 22:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.46600 * 2 1 4 4 H 1.09002 * 109.46374 * 183.32845 * 3 2 1 5 5 N 1.46900 * 109.47158 * 63.32365 * 3 2 1 6 6 C 1.46903 * 110.99494 * 84.37821 * 5 3 2 7 7 C 1.53007 * 109.46578 * 174.73674 * 6 5 3 8 8 C 1.50702 * 109.46819 * 179.97438 * 7 6 5 9 9 H 1.07998 * 119.99841 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99876 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00026 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99836 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.46926 * 90.00392 * 12 10 8 14 14 H 1.48500 * 109.46786 * 210.00112 * 12 10 8 15 15 H 1.48501 * 109.47185 * 330.00094 * 12 10 8 16 16 C 1.52998 * 109.46947 * 303.32127 * 3 2 1 17 17 C 1.53174 * 109.54826 * 299.82774 * 16 3 2 18 18 C 1.53106 * 109.15794 * 183.24131 * 17 16 3 19 19 O 1.42902 * 109.48577 * 57.47872 * 18 17 16 20 20 C 1.42902 * 114.09380 * 298.88080 * 19 18 17 21 21 C 1.53100 * 109.41205 * 61.16620 * 20 19 18 22 22 H 1.09001 * 109.47523 * 63.87670 * 1 2 3 23 23 H 1.08996 * 109.47423 * 303.87149 * 1 2 3 24 24 H 1.09000 * 109.47176 * 183.87276 * 1 2 3 25 25 H 1.08999 * 109.46562 * 119.99451 * 2 1 3 26 26 H 1.08994 * 109.47265 * 240.00203 * 2 1 3 27 27 H 1.00892 * 111.00072 * 320.42146 * 5 3 2 28 28 H 1.08994 * 109.46864 * 294.73005 * 6 5 3 29 29 H 1.08994 * 109.47486 * 54.73692 * 6 5 3 30 30 H 1.09004 * 109.46869 * 299.99833 * 7 6 5 31 31 H 1.08994 * 109.47198 * 59.99841 * 7 6 5 32 32 H 0.96999 * 120.00556 * 180.02562 * 11 10 8 33 33 H 1.09003 * 109.54441 * 60.00724 * 16 3 2 34 34 H 1.08999 * 109.52062 * 303.06133 * 17 16 3 35 35 H 1.08995 * 109.52211 * 63.24535 * 17 16 3 36 36 H 1.08998 * 109.40483 * 297.48963 * 18 17 16 37 37 H 1.09007 * 109.48024 * 177.49714 * 18 17 16 38 38 H 1.08995 * 109.48608 * 301.18240 * 20 19 18 39 39 H 1.09004 * 109.48344 * 181.14446 * 20 19 18 40 40 H 1.09002 * 109.52068 * 182.48640 * 21 20 19 41 41 H 1.08996 * 109.57627 * 62.32587 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1283 1.4432 -0.0597 5 7 1.6169 2.1115 1.2376 6 6 2.5540 1.8320 2.3338 7 6 2.1554 2.6471 3.5657 8 6 3.1164 2.3600 4.6905 9 1 3.9302 1.6659 4.5414 10 6 2.9571 2.9842 5.9096 11 7 3.7960 2.7340 6.8910 12 14 1.5506 4.1863 6.1667 13 1 0.3588 3.4543 6.6658 14 1 1.9529 5.2134 7.1608 15 1 1.2221 4.8468 4.8778 16 6 1.4628 2.1875 -1.2054 17 6 1.9064 1.4939 -2.4970 18 6 1.3920 2.2919 -3.6981 19 8 1.8809 3.6327 -3.6243 20 6 1.4569 4.3450 -2.4603 21 6 1.9758 3.6308 -1.2095 22 1 -0.3634 0.4525 -0.9227 23 1 -0.3634 0.5727 0.8532 24 1 -0.3633 -1.0253 0.0694 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 0.6766 1.8457 1.4890 28 1 2.5237 0.7697 2.5757 29 1 3.5635 2.1063 2.0277 30 1 2.1856 3.7096 3.3238 31 1 1.1459 2.3728 3.8718 32 1 3.6838 3.1728 7.7487 33 1 0.3743 2.1876 -1.1469 34 1 2.9950 1.4485 -2.5306 35 1 1.4978 0.4839 -2.5269 36 1 0.3021 2.3012 -3.6868 37 1 1.7423 1.8276 -4.6200 38 1 0.3679 4.3812 -2.4328 39 1 1.8538 5.3598 -2.4904 40 1 1.6166 4.1476 -0.3195 41 1 3.0658 3.6299 -1.2151 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309180750.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:20 Heat of formation + Delta-G solvation = -93.327882 kcal Electronic energy + Delta-G solvation = -18095.240649 eV Core-core repulsion = 15394.086823 eV Total energy + Delta-G solvation = -2701.153826 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.68321 -38.57567 -35.83323 -34.30570 -33.05496 -31.95389 -30.91511 -27.69634 -25.63473 -25.00394 -24.13288 -22.35042 -21.50509 -20.34496 -18.95980 -17.25163 -16.86593 -16.68095 -16.44524 -15.89425 -15.54861 -15.44017 -15.20776 -14.71600 -14.62049 -14.17227 -13.96629 -13.40109 -13.28611 -13.05044 -12.95089 -12.61474 -12.37152 -12.16052 -11.91350 -11.88267 -11.77128 -11.72417 -11.44967 -11.40476 -11.13210 -11.05990 -10.77353 -10.35512 -9.20683 -8.30738 -6.35377 1.35707 1.38577 1.51668 2.36270 3.04477 3.05062 3.27403 3.71127 3.96416 4.04101 4.16181 4.18821 4.21873 4.35564 4.42723 4.45833 4.54312 4.57306 4.65341 4.78864 4.86906 4.89483 4.90293 4.95055 4.97255 5.04622 5.15139 5.18150 5.25012 5.31143 5.38710 5.46455 5.50662 5.55296 5.64453 6.19726 6.26618 6.34901 6.59554 6.74103 7.29738 8.86175 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.005093 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.640222 B = 5496.188455 C = 5928.540073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.152 4.152 3 C 0.092 3.908 4 H 0.058 0.942 5 N -0.684 5.684 6 C 0.090 3.910 7 C -0.001 4.001 8 C -0.535 4.535 9 H 0.029 0.971 10 C 0.006 3.994 11 N -0.952 5.952 12 Si 0.955 3.045 13 H -0.265 1.265 14 H -0.284 1.284 15 H -0.247 1.247 16 C -0.069 4.069 17 C -0.147 4.147 18 C 0.058 3.942 19 O -0.407 6.407 20 C 0.061 3.939 21 C -0.140 4.140 22 H 0.072 0.928 23 H 0.047 0.953 24 H 0.061 0.939 25 H 0.043 0.957 26 H 0.082 0.918 27 H 0.341 0.659 28 H 0.014 0.986 29 H 0.049 0.951 30 H 0.022 0.978 31 H 0.017 0.983 32 H 0.267 0.733 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.105 0.895 38 H 0.059 0.941 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.779 -1.920 -21.492 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.191 4.191 3 C -0.018 4.018 4 H 0.076 0.924 5 N -0.316 5.316 6 C -0.039 4.039 7 C -0.039 4.039 8 C -0.573 4.573 9 H 0.047 0.953 10 C -0.191 4.191 11 N -0.593 5.593 12 Si 0.778 3.222 13 H -0.190 1.190 14 H -0.210 1.210 15 H -0.171 1.171 16 C -0.088 4.088 17 C -0.185 4.185 18 C -0.018 4.018 19 O -0.326 6.326 20 C -0.015 4.015 21 C -0.178 4.178 22 H 0.091 0.909 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.161 0.839 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.322 -1.196 -21.619 23.574 hybrid contribution -0.194 -0.731 1.381 1.574 sum -9.516 -1.927 -20.239 22.447 Atomic orbital electron populations 1.21802 0.94612 1.02085 1.02272 1.22166 0.97596 0.97259 1.02127 1.21627 0.98702 0.91617 0.89859 0.92398 1.60607 1.05810 1.61792 1.03392 1.21582 0.95388 0.96346 0.90572 1.19404 0.95444 0.96499 0.92581 1.21429 1.13041 1.25726 0.97116 0.95256 1.26007 0.99141 0.98566 0.95403 1.70066 1.39546 1.45425 1.04221 0.85594 0.79005 0.78756 0.78878 1.19020 1.20991 1.17087 1.21111 1.00592 0.94157 0.92911 1.22261 1.01610 1.00336 0.94319 1.22717 0.98556 0.81806 0.98715 1.87883 1.75144 1.26352 1.43261 1.22662 0.98996 0.95684 0.84167 1.22060 1.00438 0.96682 0.98604 0.90894 0.93400 0.92038 0.93852 0.89920 0.83854 0.96811 0.93247 0.95982 0.96469 0.92436 0.90096 0.92175 0.89082 0.92184 0.87729 0.92267 0.88703 0.90695 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.21 71.98 0.66 -2.10 16 2 C -0.15 -3.32 5.35 30.60 0.16 -3.15 16 3 C 0.09 2.33 1.92 44.92 0.09 2.42 16 4 H 0.06 1.67 7.73 -2.39 -0.02 1.65 16 5 N -0.68 -21.38 5.53 -491.55 -2.72 -24.10 16 6 C 0.09 3.63 5.44 86.30 0.47 4.10 16 7 C 0.00 -0.07 4.35 29.85 0.13 0.06 16 8 C -0.53 -31.54 9.66 25.60 0.25 -31.29 16 9 H 0.03 1.90 7.99 -2.91 -0.02 1.88 16 10 C 0.01 0.33 5.47 84.66 0.46 0.80 16 11 N -0.95 -60.60 13.96 21.45 0.30 -60.30 16 12 Si 0.95 44.99 27.47 68.60 1.88 46.87 16 13 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 14 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 15 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 16 C -0.07 -1.44 1.60 -10.68 -0.02 -1.45 16 17 C -0.15 -2.54 4.98 30.69 0.15 -2.38 16 18 C 0.06 0.96 6.84 72.02 0.49 1.45 16 19 O -0.41 -9.06 10.77 -148.98 -1.60 -10.67 16 20 C 0.06 1.25 6.84 72.02 0.49 1.74 16 21 C -0.14 -3.32 5.22 30.69 0.16 -3.16 16 22 H 0.07 1.11 6.60 -2.39 -0.02 1.10 16 23 H 0.05 0.98 6.23 -2.39 -0.01 0.96 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.04 1.12 7.43 -2.39 -0.02 1.10 16 26 H 0.08 1.50 6.70 -2.39 -0.02 1.48 16 27 H 0.34 9.96 6.47 -89.70 -0.58 9.38 16 28 H 0.01 0.56 7.47 -2.39 -0.02 0.55 16 29 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 30 H 0.02 1.06 7.20 -2.38 -0.02 1.04 16 31 H 0.02 0.78 7.57 -2.39 -0.02 0.77 16 32 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 33 H 0.08 1.57 6.46 -2.39 -0.02 1.55 16 34 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 1.25 6.70 -2.39 -0.02 1.24 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.06 1.05 8.14 -2.39 -0.02 1.04 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 1.99 7.72 -2.39 -0.02 1.97 16 41 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -66.58 310.85 1.71 -64.87 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.35 Total: 16.29 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 3.50 Total: -32.97 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.42 Total: -84.40 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -1.60 Total: -10.67 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.88 Total: 46.87 kcal Total: -66.58 1.71 -64.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309180750.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.462 kcal (2) G-P(sol) polarization free energy of solvation -66.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds