Wall clock time and date at job start Sun Mar 29 2020 23:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47002 * 2 1 4 4 H 1.09006 * 109.47233 * 305.58947 * 3 2 1 5 5 C 1.50702 * 109.47262 * 185.59190 * 3 2 1 6 6 H 1.07999 * 120.00000 * 240.00050 * 5 3 2 7 7 C 1.37883 * 119.99969 * 59.99707 * 5 3 2 8 8 N 1.31513 * 119.99543 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00005 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46713 * 60.00034 * 9 7 5 11 11 H 1.48499 * 109.47262 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47371 * 300.00564 * 9 7 5 13 13 N 1.46902 * 109.47393 * 65.59300 * 3 2 1 14 14 C 1.46898 * 111.00148 * 208.10128 * 13 3 2 15 15 H 1.09004 * 109.47132 * 34.34429 * 14 13 3 16 16 C 1.52998 * 109.46870 * 274.35146 * 14 13 3 17 17 C 1.52992 * 109.47383 * 154.35005 * 14 13 3 18 18 H 1.08999 * 109.52078 * 59.87012 * 17 14 13 19 19 C 1.53182 * 109.52320 * 179.97438 * 17 14 13 20 20 C 1.53177 * 109.03677 * 176.88763 * 19 17 14 21 21 C 1.53095 * 109.16407 * 303.01762 * 20 19 17 22 22 O 1.42910 * 109.41124 * 57.60946 * 21 20 19 23 23 C 1.42904 * 114.09639 * 298.84180 * 22 21 20 24 24 H 1.08994 * 109.47673 * 302.56069 * 1 2 3 25 25 H 1.09000 * 109.47339 * 62.56507 * 1 2 3 26 26 H 1.09010 * 109.46767 * 182.56342 * 1 2 3 27 27 H 1.08997 * 109.47543 * 239.99760 * 2 1 3 28 28 H 1.08998 * 109.47290 * 119.99744 * 2 1 3 29 29 H 0.97009 * 119.99102 * 180.02562 * 8 7 5 30 30 H 1.00901 * 110.99696 * 332.04496 * 13 3 2 31 31 H 1.09004 * 109.47305 * 300.00252 * 16 14 13 32 32 H 1.08999 * 109.47490 * 59.99957 * 16 14 13 33 33 H 1.08998 * 109.47257 * 180.02562 * 16 14 13 34 34 H 1.09008 * 109.54055 * 296.75128 * 19 17 14 35 35 H 1.08997 * 109.53978 * 56.92894 * 19 17 14 36 36 H 1.09005 * 109.52245 * 62.92276 * 20 19 17 37 37 H 1.08998 * 109.52251 * 183.11174 * 20 19 17 38 38 H 1.09000 * 109.48284 * 177.58766 * 21 20 19 39 39 H 1.09003 * 109.47929 * 297.62991 * 21 20 19 40 40 H 1.09004 * 109.48404 * 301.17679 * 23 22 21 41 41 H 1.09001 * 109.47434 * 181.14713 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5971 1.9845 -0.8357 5 6 3.5406 1.4448 -0.1384 6 1 4.1534 1.8867 0.6333 7 6 4.1312 0.8827 -1.2504 8 7 3.3848 0.3450 -2.1902 9 14 5.9912 0.8862 -1.4223 10 1 6.5949 0.1484 -0.2837 11 1 6.3717 0.2271 -2.6974 12 1 6.4857 2.2864 -1.4226 13 7 1.6636 2.0950 1.2612 14 6 1.5114 3.5447 1.0790 15 1 1.1124 3.7460 0.0848 16 6 2.8744 4.2233 1.2285 17 6 0.5500 4.0933 2.1351 18 1 0.9471 3.8904 3.1297 19 6 0.3909 5.6051 1.9466 20 6 -0.6323 6.1299 2.9585 21 6 -1.9535 5.3791 2.7727 22 8 -1.7290 3.9766 2.9307 23 6 -0.8168 3.4212 1.9812 24 1 -0.3634 0.5530 0.8661 25 1 -0.3634 0.4735 -0.9121 26 1 -0.3633 -1.0267 0.0460 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8005 -0.0508 -2.9723 30 1 0.8223 1.6882 1.6418 31 1 3.2735 4.0219 2.2227 32 1 3.5594 3.8325 0.4761 33 1 2.7615 5.2990 1.0938 34 1 1.3504 6.0959 2.1103 35 1 0.0436 5.8117 0.9343 36 1 -0.2602 5.9677 3.9702 37 1 -0.7928 7.1955 2.7949 38 1 -2.6724 5.7184 3.5185 39 1 -2.3453 5.5744 1.7745 40 1 -1.1938 3.5909 0.9726 41 1 -0.7171 2.3500 2.1567 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309222565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:49 Heat of formation + Delta-G solvation = -84.065599 kcal Electronic energy + Delta-G solvation = -18658.890557 eV Core-core repulsion = 15958.138373 eV Total energy + Delta-G solvation = -2700.752184 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.68206 -38.42412 -35.91815 -34.08861 -33.26288 -31.34838 -29.74067 -28.40946 -25.92101 -24.69163 -24.50416 -21.91025 -21.37444 -20.75584 -18.34635 -17.48681 -17.11001 -16.72653 -16.14524 -15.84283 -15.62968 -15.01463 -14.72665 -14.62599 -14.28476 -13.86787 -13.74884 -13.44781 -13.03388 -12.82927 -12.75118 -12.62888 -12.48571 -12.35149 -12.06641 -11.98207 -11.79725 -11.73417 -11.50620 -11.18034 -11.02581 -10.88869 -10.38490 -10.34358 -8.99010 -8.03004 -6.12695 1.42510 1.43569 1.51022 2.45770 2.91214 3.21663 3.53028 3.80278 3.86942 3.98455 4.07485 4.25581 4.38617 4.45989 4.52120 4.52983 4.58247 4.68723 4.73911 4.78531 4.80131 4.94265 4.99550 5.03368 5.09465 5.11453 5.23340 5.26134 5.28734 5.38005 5.43937 5.58772 5.66932 5.79725 5.93943 6.24072 6.40965 6.58541 6.99811 7.03427 7.54985 9.00226 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031818 B = 0.006497 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.803142 B = 4308.473795 C = 4985.443535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.125 4.125 3 C 0.227 3.773 4 H -0.031 1.031 5 C -0.500 4.500 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.922 5.922 9 Si 0.951 3.049 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.685 5.685 14 C 0.103 3.897 15 H 0.016 0.984 16 C -0.133 4.133 17 C -0.113 4.113 18 H 0.078 0.922 19 C -0.116 4.116 20 C -0.148 4.148 21 C 0.050 3.950 22 O -0.398 6.398 23 C 0.066 3.934 24 H 0.053 0.947 25 H 0.036 0.964 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.036 0.964 29 H 0.258 0.742 30 H 0.326 0.674 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.801 9.938 8.085 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.119 3.881 4 H -0.014 1.014 5 C -0.538 4.538 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.563 5.563 9 Si 0.777 3.223 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.319 5.319 14 C -0.007 4.007 15 H 0.034 0.966 16 C -0.190 4.190 17 C -0.132 4.132 18 H 0.096 0.904 19 C -0.154 4.154 20 C -0.186 4.186 21 C -0.026 4.026 22 O -0.317 6.317 23 C -0.011 4.011 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.147 0.853 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.129 0.871 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.228 9.783 8.281 15.230 hybrid contribution 0.496 -0.185 -1.276 1.382 sum -7.731 9.598 7.004 14.176 Atomic orbital electron populations 1.21771 0.96429 1.01264 1.00246 1.21644 0.94120 0.99367 1.01220 1.18972 0.94218 0.90390 0.84544 1.01380 1.21490 0.92707 1.35701 1.03938 0.92655 1.25665 1.01893 0.95652 0.95844 1.70001 1.36111 1.40286 1.09939 0.85722 0.81309 0.78178 0.77050 1.19993 1.21203 1.19982 1.60719 1.38663 1.02679 1.29881 1.21362 0.95386 0.88592 0.95388 0.96637 1.21807 0.96749 0.98920 1.01562 1.21863 0.94818 0.96806 0.99712 0.90391 1.21675 1.00509 0.93621 0.99613 1.22163 0.95443 1.01147 0.99807 1.22833 0.97332 0.80228 1.02214 1.87902 1.63950 1.24052 1.55782 1.22608 0.88500 0.97968 0.92011 0.92775 0.94446 0.92246 0.91337 0.94569 0.93269 0.85324 0.93003 0.93900 0.91573 0.90436 0.92053 0.91167 0.88709 0.87071 0.92880 0.93641 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 9.79 71.98 0.70 -4.59 16 2 C -0.12 -5.93 5.34 30.59 0.16 -5.77 16 3 C 0.23 11.37 2.03 44.17 0.09 11.45 16 4 H -0.03 -1.76 7.36 -2.38 -0.02 -1.77 16 5 C -0.50 -27.58 7.32 25.60 0.19 -27.39 16 6 H 0.06 3.09 6.89 -2.91 -0.02 3.07 16 7 C 0.01 0.39 5.29 84.66 0.45 0.84 16 8 N -0.92 -53.43 11.29 21.45 0.24 -53.19 16 9 Si 0.95 44.46 29.54 68.60 2.03 46.48 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.69 -28.66 6.16 -473.31 -2.92 -31.58 16 14 C 0.10 3.76 2.23 44.91 0.10 3.86 16 15 H 0.02 0.63 7.38 -2.38 -0.02 0.62 16 16 C -0.13 -4.82 8.68 71.98 0.62 -4.20 16 17 C -0.11 -3.24 2.10 -10.71 -0.02 -3.26 16 18 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 19 C -0.12 -2.69 4.86 30.71 0.15 -2.54 16 20 C -0.15 -2.72 6.14 30.69 0.19 -2.53 16 21 C 0.05 0.99 6.84 72.01 0.49 1.48 16 22 O -0.40 -10.69 10.77 -148.98 -1.60 -12.29 16 23 C 0.07 1.87 5.84 72.01 0.42 2.29 16 24 H 0.05 1.81 5.93 -2.39 -0.01 1.80 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 27 H 0.07 3.71 5.94 -2.39 -0.01 3.70 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 30 H 0.33 12.34 4.02 -89.69 -0.36 11.98 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.04 1.86 6.05 -2.39 -0.01 1.84 16 33 H 0.07 1.98 6.51 -2.39 -0.02 1.96 16 34 H 0.08 1.71 6.62 -2.38 -0.02 1.70 16 35 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.09 2.56 5.85 -2.39 -0.01 2.55 16 Total: -1.00 -60.88 305.97 1.93 -58.95 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: 0.63 Total: 21.98 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 3.55 Total: -30.36 kcal Atomic # 7 Polarization: -82.09 SS G_CDS: -2.67 Total: -84.77 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -1.60 Total: -12.29 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -60.88 1.93 -58.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309222565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.113 kcal (2) G-P(sol) polarization free energy of solvation -60.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds