Wall clock time and date at job start Sun Mar 29 2020 23:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47240 * 2 1 4 4 H 1.08997 * 109.47173 * 174.23705 * 3 2 1 5 5 C 1.50697 * 109.46753 * 54.23976 * 3 2 1 6 6 H 1.08002 * 120.00277 * 239.99386 * 5 3 2 7 7 C 1.37882 * 120.00234 * 60.00447 * 5 3 2 8 8 N 1.31517 * 119.99939 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00288 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46854 * 59.99656 * 9 7 5 11 11 H 1.48492 * 109.47047 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46805 * 299.99890 * 9 7 5 13 13 N 1.46895 * 109.47255 * 294.24238 * 3 2 1 14 14 C 1.46904 * 110.99968 * 274.75061 * 13 3 2 15 15 H 1.08997 * 109.46979 * 35.24559 * 14 13 3 16 16 C 1.52995 * 109.47200 * 275.24489 * 14 13 3 17 17 C 1.53002 * 109.47269 * 155.24075 * 14 13 3 18 18 H 1.08996 * 109.52373 * 304.87985 * 17 14 13 19 19 C 1.53179 * 109.57532 * 184.71394 * 17 14 13 20 20 C 1.53179 * 109.03436 * 183.08316 * 19 17 14 21 21 C 1.53091 * 109.15985 * 56.98685 * 20 19 17 22 22 O 1.42902 * 109.42549 * 302.38842 * 21 20 19 23 23 C 1.42911 * 114.09437 * 61.14378 * 22 21 20 24 24 H 1.09004 * 109.47025 * 298.74784 * 1 2 3 25 25 H 1.09004 * 109.47071 * 58.74726 * 1 2 3 26 26 H 1.09001 * 109.47222 * 178.74413 * 1 2 3 27 27 H 1.09006 * 109.46832 * 240.00223 * 2 1 3 28 28 H 1.09002 * 109.47295 * 120.00601 * 2 1 3 29 29 H 0.96994 * 120.00104 * 180.02562 * 8 7 5 30 30 H 1.00897 * 111.00272 * 38.70050 * 13 3 2 31 31 H 1.09009 * 109.46877 * 300.00161 * 16 14 13 32 32 H 1.08998 * 109.47441 * 59.99445 * 16 14 13 33 33 H 1.08999 * 109.47440 * 179.97438 * 16 14 13 34 34 H 1.08997 * 109.54442 * 302.95330 * 19 17 14 35 35 H 1.09001 * 109.53658 * 63.21747 * 19 17 14 36 36 H 1.09001 * 109.51517 * 176.89179 * 20 19 17 37 37 H 1.08992 * 109.52265 * 297.07618 * 20 19 17 38 38 H 1.08998 * 109.48326 * 62.37420 * 21 20 19 39 39 H 1.09004 * 109.47533 * 182.39591 * 21 20 19 40 40 H 1.08993 * 109.47579 * 178.87118 * 23 22 21 41 41 H 1.09004 * 109.47548 * 58.84820 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1251 1.4442 0.1032 5 6 1.4246 2.1928 1.1529 6 1 0.8173 3.0662 0.9663 7 6 1.6370 1.7645 2.4462 8 7 2.3763 0.7008 2.6736 9 14 0.8748 2.6949 3.8755 10 1 -0.6035 2.6931 3.7351 11 1 1.2512 2.0362 5.1519 12 1 1.3703 4.0948 3.8753 13 7 1.6672 2.0937 -1.2628 14 6 2.6581 1.8159 -2.3111 15 1 3.0445 0.8043 -2.1869 16 6 3.8090 2.8182 -2.2034 17 6 1.9969 1.9441 -3.6849 18 1 1.1242 1.2928 -3.7313 19 6 2.9952 1.5410 -4.7745 20 6 2.3469 1.7472 -6.1470 21 6 1.9014 3.2060 -6.2782 22 8 0.9988 3.5245 -5.2170 23 6 1.5648 3.3953 -3.9111 24 1 -0.3633 0.4943 0.9010 25 1 -0.3633 0.5332 -0.8786 26 1 -0.3634 -1.0274 -0.0225 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.5254 0.3992 3.5833 30 1 0.7432 1.8132 -1.5553 31 1 3.4226 3.8299 -2.3276 32 1 4.2801 2.7269 -1.2248 33 1 4.5445 2.6118 -2.9809 34 1 3.8892 2.1596 -4.6969 35 1 3.2643 0.4918 -4.6523 36 1 3.0693 1.5151 -6.9295 37 1 1.4813 1.0919 -6.2431 38 1 2.7726 3.8586 -6.2225 39 1 1.4011 3.3484 -7.2361 40 1 0.8220 3.6742 -3.1639 41 1 2.4317 4.0505 -3.8243 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309222569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:51 Heat of formation + Delta-G solvation = -66.728279 kcal Electronic energy + Delta-G solvation = -18609.167643 eV Core-core repulsion = 15909.167262 eV Total energy + Delta-G solvation = -2700.000381 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.54741 -36.93326 -34.47088 -32.68498 -31.41882 -29.68024 -27.95530 -26.13766 -24.89818 -23.98400 -23.15102 -21.10911 -19.35359 -18.75515 -16.42081 -16.06322 -15.74187 -14.94948 -14.83003 -14.65799 -14.26430 -13.63555 -13.36898 -12.71072 -12.66402 -12.49710 -12.32868 -12.09040 -11.81737 -11.49112 -11.21834 -10.93511 -10.84865 -10.76844 -10.58994 -10.51317 -10.27957 -10.03880 -9.93231 -9.65780 -9.48730 -9.19838 -8.91894 -8.30808 -7.18351 -5.94469 -3.95615 3.36119 3.40409 3.43812 4.03661 4.46239 4.81202 4.86580 4.90266 5.06470 5.27981 5.37289 5.40898 5.49667 5.58073 5.72019 5.79510 5.85735 5.86938 5.99617 6.09749 6.18681 6.26911 6.36252 6.39039 6.43411 6.49053 6.58052 6.60717 6.87031 6.93272 7.31188 7.33889 7.36531 7.53197 7.73539 7.92985 8.33096 8.59425 8.67338 9.10005 9.67949 11.12627 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037710 B = 0.005714 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.327673 B = 4898.735097 C = 5022.864882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.033 0.967 5 C -0.487 4.487 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.090 3.910 15 H 0.036 0.964 16 C -0.140 4.140 17 C -0.120 4.120 18 H 0.072 0.928 19 C -0.118 4.118 20 C -0.155 4.155 21 C 0.060 3.940 22 O -0.389 6.389 23 C 0.069 3.931 24 H 0.066 0.934 25 H 0.029 0.971 26 H 0.021 0.979 27 H 0.009 0.991 28 H 0.091 0.909 29 H 0.259 0.741 30 H 0.326 0.674 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.990 1.398 -14.365 14.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.109 3.891 4 H 0.051 0.949 5 C -0.526 4.526 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.312 5.312 14 C -0.020 4.020 15 H 0.054 0.946 16 C -0.198 4.198 17 C -0.139 4.139 18 H 0.090 0.910 19 C -0.156 4.156 20 C -0.193 4.193 21 C -0.017 4.017 22 O -0.307 6.307 23 C -0.007 4.007 24 H 0.085 0.915 25 H 0.048 0.952 26 H 0.040 0.960 27 H 0.027 0.973 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.122 0.878 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.152 1.962 -14.055 14.238 hybrid contribution -0.237 -0.786 0.734 1.101 sum 0.915 1.177 -13.320 13.403 Atomic orbital electron populations 1.21561 0.97699 0.97933 1.01250 1.22107 0.95000 1.01299 1.00043 1.19208 0.95975 0.88448 0.85507 0.94907 1.21034 1.30370 1.11433 0.89745 0.92137 1.24908 0.95602 0.95172 0.98679 1.69874 1.39309 1.24132 1.20407 0.86647 0.79611 0.80020 0.81616 1.20424 1.21584 1.20393 1.60920 1.03525 1.63231 1.03517 1.21366 0.93950 0.97088 0.89643 0.94587 1.21886 0.97072 0.99656 1.01144 1.21934 0.98594 0.98117 0.95259 0.90992 1.21681 0.98431 1.01756 0.93728 1.22185 1.01123 0.98032 0.97911 1.22506 0.93683 0.94501 0.90979 1.87924 1.39115 1.88782 1.14912 1.22745 0.99441 0.95016 0.83462 0.91527 0.95177 0.96012 0.97251 0.89060 0.93144 0.85501 0.92279 0.92290 0.93821 0.91447 0.91759 0.91344 0.91315 0.93554 0.89547 0.87760 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.39 37.16 0.35 -2.37 16 2 C -0.14 -3.38 5.48 -26.73 -0.15 -3.53 16 3 C 0.22 5.24 2.14 -68.87 -0.15 5.09 16 4 H 0.03 0.89 7.10 -51.93 -0.37 0.52 16 5 C -0.49 -13.02 7.35 -34.44 -0.25 -13.28 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.54 5.23 -17.82 -0.09 1.45 16 8 N -0.90 -25.25 11.38 55.43 0.63 -24.62 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.68 -13.83 5.54 -100.96 -0.56 -14.39 16 14 C 0.09 1.55 2.19 -67.71 -0.15 1.40 16 15 H 0.04 0.67 7.12 -51.93 -0.37 0.30 16 16 C -0.14 -2.29 8.67 37.16 0.32 -1.97 16 17 C -0.12 -1.74 2.09 -90.48 -0.19 -1.93 16 18 H 0.07 1.11 8.03 -51.93 -0.42 0.69 16 19 C -0.12 -1.44 5.13 -26.55 -0.14 -1.58 16 20 C -0.15 -1.65 6.14 -26.59 -0.16 -1.81 16 21 C 0.06 0.67 6.84 37.20 0.25 0.93 16 22 O -0.39 -5.62 10.77 -35.23 -0.38 -6.00 16 23 C 0.07 1.01 5.57 37.21 0.21 1.22 16 24 H 0.07 1.57 7.05 -51.93 -0.37 1.20 16 25 H 0.03 0.58 6.42 -51.93 -0.33 0.25 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.01 0.19 7.39 -51.93 -0.38 -0.19 16 28 H 0.09 2.40 6.25 -51.93 -0.32 2.08 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.33 6.47 6.14 -39.29 -0.24 6.23 16 31 H 0.06 0.95 6.30 -51.92 -0.33 0.62 16 32 H 0.06 1.10 7.41 -51.93 -0.38 0.71 16 33 H 0.04 0.60 6.51 -51.93 -0.34 0.27 16 34 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.10 1.65 7.83 -51.93 -0.41 1.24 16 41 H 0.05 0.77 6.21 -51.93 -0.32 0.44 16 LS Contribution 305.92 15.07 4.61 4.61 Total: -1.00 -27.49 305.92 -7.86 -35.35 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -7.00 Total: 5.10 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -0.14 Total: -16.37 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.07 Total: -39.02 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.38 Total: -6.00 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.49 -7.86 -35.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309222569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.378 kcal (2) G-P(sol) polarization free energy of solvation -27.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds