Wall clock time and date at job start Sun Mar 29 2020 23:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47240 * 2 1 4 4 H 1.08997 * 109.47173 * 174.23705 * 3 2 1 5 5 C 1.50697 * 109.46753 * 54.23976 * 3 2 1 6 6 H 1.08002 * 120.00277 * 239.99386 * 5 3 2 7 7 C 1.37882 * 120.00234 * 60.00447 * 5 3 2 8 8 N 1.31517 * 119.99939 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00288 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46854 * 59.99656 * 9 7 5 11 11 H 1.48492 * 109.47047 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46805 * 299.99890 * 9 7 5 13 13 N 1.46895 * 109.47255 * 294.24238 * 3 2 1 14 14 C 1.46904 * 110.99968 * 274.75061 * 13 3 2 15 15 H 1.08997 * 109.46979 * 35.24559 * 14 13 3 16 16 C 1.52995 * 109.47200 * 275.24489 * 14 13 3 17 17 C 1.53002 * 109.47269 * 155.24075 * 14 13 3 18 18 H 1.08996 * 109.52373 * 304.87985 * 17 14 13 19 19 C 1.53179 * 109.57532 * 184.71394 * 17 14 13 20 20 C 1.53179 * 109.03436 * 183.08316 * 19 17 14 21 21 C 1.53091 * 109.15985 * 56.98685 * 20 19 17 22 22 O 1.42902 * 109.42549 * 302.38842 * 21 20 19 23 23 C 1.42911 * 114.09437 * 61.14378 * 22 21 20 24 24 H 1.09004 * 109.47025 * 298.74784 * 1 2 3 25 25 H 1.09004 * 109.47071 * 58.74726 * 1 2 3 26 26 H 1.09001 * 109.47222 * 178.74413 * 1 2 3 27 27 H 1.09006 * 109.46832 * 240.00223 * 2 1 3 28 28 H 1.09002 * 109.47295 * 120.00601 * 2 1 3 29 29 H 0.96994 * 120.00104 * 180.02562 * 8 7 5 30 30 H 1.00897 * 111.00272 * 38.70050 * 13 3 2 31 31 H 1.09009 * 109.46877 * 300.00161 * 16 14 13 32 32 H 1.08998 * 109.47441 * 59.99445 * 16 14 13 33 33 H 1.08999 * 109.47440 * 179.97438 * 16 14 13 34 34 H 1.08997 * 109.54442 * 302.95330 * 19 17 14 35 35 H 1.09001 * 109.53658 * 63.21747 * 19 17 14 36 36 H 1.09001 * 109.51517 * 176.89179 * 20 19 17 37 37 H 1.08992 * 109.52265 * 297.07618 * 20 19 17 38 38 H 1.08998 * 109.48326 * 62.37420 * 21 20 19 39 39 H 1.09004 * 109.47533 * 182.39591 * 21 20 19 40 40 H 1.08993 * 109.47579 * 178.87118 * 23 22 21 41 41 H 1.09004 * 109.47548 * 58.84820 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1251 1.4442 0.1032 5 6 1.4246 2.1928 1.1529 6 1 0.8173 3.0662 0.9663 7 6 1.6370 1.7645 2.4462 8 7 2.3763 0.7008 2.6736 9 14 0.8748 2.6949 3.8755 10 1 -0.6035 2.6931 3.7351 11 1 1.2512 2.0362 5.1519 12 1 1.3703 4.0948 3.8753 13 7 1.6672 2.0937 -1.2628 14 6 2.6581 1.8159 -2.3111 15 1 3.0445 0.8043 -2.1869 16 6 3.8090 2.8182 -2.2034 17 6 1.9969 1.9441 -3.6849 18 1 1.1242 1.2928 -3.7313 19 6 2.9952 1.5410 -4.7745 20 6 2.3469 1.7472 -6.1470 21 6 1.9014 3.2060 -6.2782 22 8 0.9988 3.5245 -5.2170 23 6 1.5648 3.3953 -3.9111 24 1 -0.3633 0.4943 0.9010 25 1 -0.3633 0.5332 -0.8786 26 1 -0.3634 -1.0274 -0.0225 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 2.5254 0.3992 3.5833 30 1 0.7432 1.8132 -1.5553 31 1 3.4226 3.8299 -2.3276 32 1 4.2801 2.7269 -1.2248 33 1 4.5445 2.6118 -2.9809 34 1 3.8892 2.1596 -4.6969 35 1 3.2643 0.4918 -4.6523 36 1 3.0693 1.5151 -6.9295 37 1 1.4813 1.0919 -6.2431 38 1 2.7726 3.8586 -6.2225 39 1 1.4011 3.3484 -7.2361 40 1 0.8220 3.6742 -3.1639 41 1 2.4317 4.0505 -3.8243 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309222569.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:50 Heat of formation + Delta-G solvation = -83.530022 kcal Electronic energy + Delta-G solvation = -18609.896221 eV Core-core repulsion = 15909.167262 eV Total energy + Delta-G solvation = -2700.728959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.68360 -38.49474 -35.99871 -34.02303 -33.12405 -31.12719 -29.38129 -28.03967 -25.96687 -25.44583 -24.77233 -22.34056 -20.93446 -20.18166 -18.20254 -17.20701 -17.10123 -16.64227 -16.40755 -15.78210 -15.55480 -15.03631 -14.89131 -14.37397 -14.19272 -14.04591 -13.54215 -13.37571 -13.31942 -12.88365 -12.78661 -12.60318 -12.44976 -12.37398 -12.05887 -11.89460 -11.72364 -11.60539 -11.44643 -11.16326 -11.08829 -10.90824 -10.40190 -10.27369 -8.88542 -8.03192 -6.10926 1.44860 1.45212 1.52716 2.47157 3.03310 3.25844 3.54951 3.84469 3.86875 4.05507 4.10772 4.28546 4.39997 4.50939 4.57186 4.57882 4.60873 4.66487 4.74350 4.75217 4.91024 4.99353 4.99977 5.03270 5.08987 5.10708 5.19225 5.31204 5.36705 5.44352 5.46208 5.54343 5.68932 5.75889 5.88858 6.34693 6.36155 6.73806 6.91132 7.02831 7.56861 9.02102 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037710 B = 0.005714 C = 0.005573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.327673 B = 4898.735097 C = 5022.864882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.138 4.138 3 C 0.224 3.776 4 H -0.002 1.002 5 C -0.497 4.497 6 H 0.052 0.948 7 C 0.014 3.986 8 N -0.922 5.922 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.681 5.681 14 C 0.091 3.909 15 H 0.022 0.978 16 C -0.134 4.134 17 C -0.110 4.110 18 H 0.063 0.937 19 C -0.117 4.117 20 C -0.149 4.149 21 C 0.052 3.948 22 O -0.406 6.406 23 C 0.075 3.925 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.041 0.959 27 H 0.022 0.978 28 H 0.059 0.941 29 H 0.258 0.742 30 H 0.330 0.670 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.086 0.914 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 1.742 -16.119 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.116 3.884 4 H 0.016 0.984 5 C -0.536 4.536 6 H 0.070 0.930 7 C -0.184 4.184 8 N -0.563 5.563 9 Si 0.776 3.224 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.312 5.312 14 C -0.019 4.019 15 H 0.040 0.960 16 C -0.192 4.192 17 C -0.129 4.129 18 H 0.082 0.918 19 C -0.155 4.155 20 C -0.186 4.186 21 C -0.025 4.025 22 O -0.325 6.325 23 C -0.001 4.001 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.149 0.851 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.890 2.312 -15.829 16.022 hybrid contribution -0.124 -0.888 1.206 1.503 sum 0.766 1.424 -14.623 14.713 Atomic orbital electron populations 1.21441 0.96013 0.99218 1.00837 1.21956 0.96419 1.00341 0.99068 1.18920 0.93601 0.89122 0.86791 0.98398 1.21267 1.30160 1.11283 0.90911 0.93014 1.25574 0.96037 0.95897 1.00928 1.70008 1.40319 1.25272 1.20657 0.85747 0.79045 0.78785 0.78830 1.19769 1.21376 1.20190 1.60807 1.04428 1.62777 1.03212 1.21418 0.93638 0.96511 0.90349 0.96008 1.21839 0.97222 0.99624 1.00475 1.21812 0.98732 0.98195 0.94206 0.91818 1.21688 0.98020 1.01993 0.93770 1.22158 1.01468 0.97558 0.97458 1.22785 0.93953 0.95019 0.90703 1.87902 1.40404 1.89028 1.15198 1.22577 0.98978 0.94843 0.83699 0.93945 0.93357 0.93986 0.95944 0.92194 0.93328 0.85131 0.91918 0.95259 0.90864 0.90666 0.91539 0.88740 0.91763 0.92477 0.87550 0.89564 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.39 71.98 0.68 -4.29 16 2 C -0.14 -6.51 5.48 30.60 0.17 -6.34 16 3 C 0.22 11.11 2.14 44.17 0.09 11.21 16 4 H 0.00 -0.11 7.10 -2.39 -0.02 -0.12 16 5 C -0.50 -27.05 7.35 25.60 0.19 -26.87 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 7 C 0.01 0.75 5.23 84.66 0.44 1.19 16 8 N -0.92 -52.98 11.38 21.45 0.24 -52.73 16 9 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.68 -27.86 5.54 -473.32 -2.62 -30.48 16 14 C 0.09 3.10 2.19 44.91 0.10 3.20 16 15 H 0.02 0.82 7.12 -2.39 -0.02 0.80 16 16 C -0.13 -4.32 8.67 71.98 0.62 -3.69 16 17 C -0.11 -3.05 2.09 -10.70 -0.02 -3.07 16 18 H 0.06 1.88 8.03 -2.39 -0.02 1.86 16 19 C -0.12 -2.55 5.13 30.71 0.16 -2.39 16 20 C -0.15 -2.68 6.14 30.68 0.19 -2.49 16 21 C 0.05 0.99 6.84 72.01 0.49 1.49 16 22 O -0.41 -10.95 10.77 -148.98 -1.60 -12.55 16 23 C 0.08 2.10 5.57 72.01 0.40 2.50 16 24 H 0.04 1.98 7.05 -2.38 -0.02 1.96 16 25 H 0.05 1.83 6.42 -2.38 -0.02 1.82 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.02 0.96 7.39 -2.38 -0.02 0.95 16 28 H 0.06 3.22 6.25 -2.39 -0.01 3.21 16 29 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 30 H 0.33 12.98 6.14 -89.70 -0.55 12.43 16 31 H 0.06 1.96 6.30 -2.38 -0.01 1.94 16 32 H 0.03 1.09 7.41 -2.39 -0.02 1.08 16 33 H 0.07 1.90 6.51 -2.39 -0.02 1.88 16 34 H 0.07 1.53 6.44 -2.39 -0.02 1.52 16 35 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.09 2.69 7.83 -2.39 -0.02 2.67 16 41 H 0.06 1.57 6.21 -2.38 -0.01 1.55 16 Total: -1.00 -59.42 305.92 2.00 -57.42 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.45 Total: 21.79 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 3.51 Total: -29.56 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -2.38 Total: -83.21 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: -1.60 Total: -12.55 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -59.42 2.00 -57.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309222569.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.113 kcal (2) G-P(sol) polarization free energy of solvation -59.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds