Wall clock time and date at job start Sun Mar 29 2020 23:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53008 * 109.46815 * 2 1 4 4 H 1.08998 * 109.46910 * 305.05077 * 3 2 1 5 5 C 1.50700 * 109.46631 * 185.05050 * 3 2 1 6 6 H 1.07996 * 119.99745 * 239.99764 * 5 3 2 7 7 C 1.37874 * 120.00188 * 60.00171 * 5 3 2 8 8 N 1.31518 * 119.99928 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00138 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47147 * 89.99852 * 9 7 5 11 11 H 1.48507 * 109.47052 * 209.99920 * 9 7 5 12 12 H 1.48501 * 109.47113 * 329.99563 * 9 7 5 13 13 N 1.46894 * 109.46941 * 65.05006 * 3 2 1 14 14 C 1.46904 * 110.99835 * 204.83992 * 13 3 2 15 15 H 1.09004 * 109.46642 * 325.49195 * 14 13 3 16 16 C 1.52997 * 109.47174 * 85.49225 * 14 13 3 17 17 C 1.52997 * 109.47260 * 205.49436 * 14 13 3 18 18 H 1.09000 * 109.52016 * 299.87389 * 17 14 13 19 19 C 1.53181 * 109.52177 * 179.68374 * 17 14 13 20 20 C 1.53183 * 109.03296 * 183.11338 * 19 17 14 21 21 C 1.53095 * 109.16360 * 56.98198 * 20 19 17 22 22 O 1.42897 * 109.41249 * 302.38686 * 21 20 19 23 23 C 1.42901 * 114.09699 * 61.16436 * 22 21 20 24 24 H 1.09000 * 109.47066 * 180.21453 * 1 2 3 25 25 H 1.09001 * 109.47043 * 300.21634 * 1 2 3 26 26 H 1.09006 * 109.46864 * 60.21334 * 1 2 3 27 27 H 1.08998 * 109.46954 * 239.99930 * 2 1 3 28 28 H 1.08998 * 109.46782 * 119.99766 * 2 1 3 29 29 H 0.96998 * 120.00029 * 180.02562 * 8 7 5 30 30 H 1.00906 * 111.00144 * 80.89186 * 13 3 2 31 31 H 1.08996 * 109.46841 * 305.92945 * 16 14 13 32 32 H 1.08999 * 109.46847 * 65.93224 * 16 14 13 33 33 H 1.09000 * 109.47173 * 185.93017 * 16 14 13 34 34 H 1.08995 * 109.54263 * 63.24686 * 19 17 14 35 35 H 1.08995 * 109.54256 * 302.97845 * 19 17 14 36 36 H 1.09001 * 109.52071 * 297.07253 * 20 19 17 37 37 H 1.09003 * 109.51712 * 176.88715 * 20 19 17 38 38 H 1.08999 * 109.48162 * 62.37626 * 21 20 19 39 39 H 1.09001 * 109.47851 * 182.39678 * 21 20 19 40 40 H 1.08994 * 109.48689 * 58.82022 * 23 22 21 41 41 H 1.09003 * 109.48083 * 178.84427 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9818 -0.8413 5 6 3.5418 1.4444 -0.1251 6 1 4.1477 1.8888 0.6507 7 6 4.1423 0.8788 -1.2299 8 7 3.4044 0.3373 -2.1743 9 14 6.0038 0.8817 -1.3852 10 1 6.5543 -0.3499 -0.7644 11 1 6.3806 0.9232 -2.8211 12 1 6.5564 2.0741 -0.6938 13 7 1.6524 2.0989 1.2557 14 6 1.5771 3.5562 1.0865 15 1 2.3421 3.8801 0.3808 16 6 0.1953 3.9368 0.5511 17 6 1.8067 4.2389 2.4364 18 1 1.0408 3.9173 3.1421 19 6 1.7362 5.7589 2.2598 20 6 2.0444 6.4324 3.6007 21 6 3.4176 5.9676 4.0926 22 8 3.4246 4.5432 4.2056 23 6 3.1892 3.8590 2.9733 24 1 -0.3633 -1.0277 0.0038 25 1 -0.3633 0.5172 0.8880 26 1 -0.3633 0.5105 -0.8920 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8269 -0.0609 -2.9514 30 1 2.2855 1.8539 2.0023 31 1 -0.0114 3.3697 -0.3565 32 1 -0.5609 3.7086 1.3023 33 1 0.1738 5.0031 0.3261 34 1 0.7362 6.0418 1.9310 35 1 2.4686 6.0740 1.5167 36 1 1.2833 6.1561 4.3305 37 1 2.0507 7.5147 3.4717 38 1 4.1830 6.2798 3.3821 39 1 3.6238 6.4107 5.0670 40 1 3.9515 4.1434 2.2481 41 1 3.2308 2.7828 3.1413 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309222573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:53 Heat of formation + Delta-G solvation = -72.577688 kcal Electronic energy + Delta-G solvation = -18677.820516 eV Core-core repulsion = 15977.566485 eV Total energy + Delta-G solvation = -2700.254030 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.42811 -36.72833 -34.32146 -32.59344 -31.49913 -29.83072 -28.67481 -26.11185 -24.68235 -23.49854 -22.65394 -20.58738 -19.54550 -19.29202 -16.78784 -16.05430 -15.77536 -14.97713 -14.66910 -14.53943 -14.12719 -13.42200 -13.19905 -13.04269 -12.72316 -12.59880 -12.07221 -11.71524 -11.46317 -11.33443 -11.20113 -11.09018 -10.99304 -10.86060 -10.68360 -10.56758 -10.30537 -10.05087 -9.90941 -9.56995 -9.38144 -9.18127 -9.01408 -8.36851 -7.23578 -5.99699 -4.12929 3.25956 3.33323 3.35561 4.04946 4.38662 4.87396 4.92835 4.97475 5.13179 5.24676 5.34171 5.45710 5.54104 5.64683 5.79148 5.87795 5.90702 6.07016 6.08378 6.13710 6.22427 6.29787 6.40901 6.47707 6.52320 6.54466 6.71482 6.77023 6.90516 7.15642 7.20154 7.38571 7.47131 7.61563 7.78273 8.10761 8.17037 8.35631 8.68697 9.00452 9.54889 11.00077 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020814 B = 0.007829 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.938110 B = 3575.660738 C = 4428.092077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.545 4.545 6 H 0.052 0.948 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.686 5.686 14 C 0.095 3.905 15 H 0.047 0.953 16 C -0.133 4.133 17 C -0.119 4.119 18 H 0.079 0.921 19 C -0.116 4.116 20 C -0.154 4.154 21 C 0.059 3.941 22 O -0.385 6.385 23 C 0.063 3.937 24 H 0.023 0.977 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.089 0.911 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.326 0.674 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.043 0.957 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.105 9.338 7.985 12.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.318 5.318 14 C -0.016 4.016 15 H 0.065 0.935 16 C -0.191 4.191 17 C -0.138 4.138 18 H 0.098 0.902 19 C -0.154 4.154 20 C -0.192 4.192 21 C -0.018 4.018 22 O -0.304 6.304 23 C -0.014 4.014 24 H 0.042 0.958 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.108 0.892 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.144 0.856 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.739 9.045 7.863 12.555 hybrid contribution 1.993 0.321 -0.578 2.100 sum -1.745 9.367 7.284 11.993 Atomic orbital electron populations 1.21702 0.99037 0.98285 1.00382 1.21500 0.92099 0.99336 1.01582 1.19167 0.92619 0.91158 0.86308 0.94888 1.21871 0.92813 1.38205 1.05483 0.92943 1.24922 0.97774 0.95039 0.95729 1.69878 1.34744 1.38206 1.09436 0.86697 0.86265 0.78427 0.77211 1.20621 1.21229 1.20096 1.60997 1.55706 1.05239 1.09849 1.21285 0.96673 0.89851 0.93756 0.93488 1.21780 0.97080 0.99119 1.01157 1.21928 0.98146 0.95068 0.98667 0.90220 1.21658 1.02170 0.95067 0.96552 1.22189 0.98501 1.00216 0.98298 1.22527 0.95954 0.82138 1.01153 1.87911 1.92467 1.17737 1.32283 1.22748 0.95556 0.97421 0.85668 0.95762 0.93238 0.94585 0.89244 0.95194 0.92906 0.85567 0.92528 0.93093 0.93791 0.91245 0.91946 0.91266 0.91376 0.93514 0.89493 0.93035 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.80 37.16 0.36 -2.46 16 2 C -0.11 -2.54 5.45 -26.72 -0.15 -2.69 16 3 C 0.22 5.20 1.77 -68.86 -0.12 5.08 16 4 H 0.03 0.89 7.13 -51.93 -0.37 0.52 16 5 C -0.54 -14.36 8.26 -34.44 -0.28 -14.64 16 6 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.79 11.29 55.43 0.63 -24.17 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 15.99 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.69 -13.96 5.50 -100.95 -0.56 -14.52 16 14 C 0.09 1.71 2.03 -67.71 -0.14 1.57 16 15 H 0.05 0.97 7.62 -51.93 -0.40 0.57 16 16 C -0.13 -2.20 8.91 37.16 0.33 -1.87 16 17 C -0.12 -1.82 2.11 -90.48 -0.19 -2.01 16 18 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 19 C -0.12 -1.51 4.87 -26.54 -0.13 -1.64 16 20 C -0.15 -1.74 6.14 -26.59 -0.16 -1.90 16 21 C 0.06 0.73 6.84 37.21 0.25 0.98 16 22 O -0.39 -6.00 10.77 -35.23 -0.38 -6.38 16 23 C 0.06 1.01 5.83 37.21 0.22 1.23 16 24 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.98 7.75 -51.93 -0.40 0.58 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 2.38 5.95 -51.93 -0.31 2.07 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.33 6.59 5.90 -39.29 -0.23 6.36 16 31 H 0.06 1.03 7.40 -51.93 -0.38 0.65 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.04 0.63 6.85 -51.93 -0.36 0.27 16 34 H 0.07 0.84 6.77 -51.93 -0.35 0.49 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.10 1.65 6.32 -51.93 -0.33 1.33 16 LS Contribution 313.03 15.07 4.72 4.72 Total: -1.00 -27.30 313.03 -8.03 -35.33 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.32 Total: 5.63 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -0.10 Total: -16.61 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.07 Total: -38.69 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.38 Total: -6.38 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.30 -8.03 -35.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309222573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.247 kcal (2) G-P(sol) polarization free energy of solvation -27.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds