Wall clock time and date at job start Sun Mar 29 2020 23:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53008 * 109.46815 * 2 1 4 4 H 1.08998 * 109.46910 * 305.05077 * 3 2 1 5 5 C 1.50700 * 109.46631 * 185.05050 * 3 2 1 6 6 H 1.07996 * 119.99745 * 239.99764 * 5 3 2 7 7 C 1.37874 * 120.00188 * 60.00171 * 5 3 2 8 8 N 1.31518 * 119.99928 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00138 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47147 * 89.99852 * 9 7 5 11 11 H 1.48507 * 109.47052 * 209.99920 * 9 7 5 12 12 H 1.48501 * 109.47113 * 329.99563 * 9 7 5 13 13 N 1.46894 * 109.46941 * 65.05006 * 3 2 1 14 14 C 1.46904 * 110.99835 * 204.83992 * 13 3 2 15 15 H 1.09004 * 109.46642 * 325.49195 * 14 13 3 16 16 C 1.52997 * 109.47174 * 85.49225 * 14 13 3 17 17 C 1.52997 * 109.47260 * 205.49436 * 14 13 3 18 18 H 1.09000 * 109.52016 * 299.87389 * 17 14 13 19 19 C 1.53181 * 109.52177 * 179.68374 * 17 14 13 20 20 C 1.53183 * 109.03296 * 183.11338 * 19 17 14 21 21 C 1.53095 * 109.16360 * 56.98198 * 20 19 17 22 22 O 1.42897 * 109.41249 * 302.38686 * 21 20 19 23 23 C 1.42901 * 114.09699 * 61.16436 * 22 21 20 24 24 H 1.09000 * 109.47066 * 180.21453 * 1 2 3 25 25 H 1.09001 * 109.47043 * 300.21634 * 1 2 3 26 26 H 1.09006 * 109.46864 * 60.21334 * 1 2 3 27 27 H 1.08998 * 109.46954 * 239.99930 * 2 1 3 28 28 H 1.08998 * 109.46782 * 119.99766 * 2 1 3 29 29 H 0.96998 * 120.00029 * 180.02562 * 8 7 5 30 30 H 1.00906 * 111.00144 * 80.89186 * 13 3 2 31 31 H 1.08996 * 109.46841 * 305.92945 * 16 14 13 32 32 H 1.08999 * 109.46847 * 65.93224 * 16 14 13 33 33 H 1.09000 * 109.47173 * 185.93017 * 16 14 13 34 34 H 1.08995 * 109.54263 * 63.24686 * 19 17 14 35 35 H 1.08995 * 109.54256 * 302.97845 * 19 17 14 36 36 H 1.09001 * 109.52071 * 297.07253 * 20 19 17 37 37 H 1.09003 * 109.51712 * 176.88715 * 20 19 17 38 38 H 1.08999 * 109.48162 * 62.37626 * 21 20 19 39 39 H 1.09001 * 109.47851 * 182.39678 * 21 20 19 40 40 H 1.08994 * 109.48689 * 58.82022 * 23 22 21 41 41 H 1.09003 * 109.48083 * 178.84427 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9818 -0.8413 5 6 3.5418 1.4444 -0.1251 6 1 4.1477 1.8888 0.6507 7 6 4.1423 0.8788 -1.2299 8 7 3.4044 0.3373 -2.1743 9 14 6.0038 0.8817 -1.3852 10 1 6.5543 -0.3499 -0.7644 11 1 6.3806 0.9232 -2.8211 12 1 6.5564 2.0741 -0.6938 13 7 1.6524 2.0989 1.2557 14 6 1.5771 3.5562 1.0865 15 1 2.3421 3.8801 0.3808 16 6 0.1953 3.9368 0.5511 17 6 1.8067 4.2389 2.4364 18 1 1.0408 3.9173 3.1421 19 6 1.7362 5.7589 2.2598 20 6 2.0444 6.4324 3.6007 21 6 3.4176 5.9676 4.0926 22 8 3.4246 4.5432 4.2056 23 6 3.1892 3.8590 2.9733 24 1 -0.3633 -1.0277 0.0038 25 1 -0.3633 0.5172 0.8880 26 1 -0.3633 0.5105 -0.8920 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.8269 -0.0609 -2.9514 30 1 2.2855 1.8539 2.0023 31 1 -0.0114 3.3697 -0.3565 32 1 -0.5609 3.7086 1.3023 33 1 0.1738 5.0031 0.3261 34 1 0.7362 6.0418 1.9310 35 1 2.4686 6.0740 1.5167 36 1 1.2833 6.1561 4.3305 37 1 2.0507 7.5147 3.4717 38 1 4.1830 6.2798 3.3821 39 1 3.6238 6.4107 5.0670 40 1 3.9515 4.1434 2.2481 41 1 3.2308 2.7828 3.1413 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309222573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:52 Heat of formation + Delta-G solvation = -88.928396 kcal Electronic energy + Delta-G solvation = -18678.529535 eV Core-core repulsion = 15977.566485 eV Total energy + Delta-G solvation = -2700.963050 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.64228 -38.31544 -35.91228 -34.04157 -33.22890 -31.26375 -30.14230 -27.96356 -25.92828 -24.83777 -24.34656 -21.86717 -21.24870 -20.73574 -18.72733 -17.27756 -17.04337 -16.78983 -16.20319 -15.84524 -15.44699 -14.99387 -14.70197 -14.51254 -14.22416 -13.80023 -13.58012 -13.31439 -13.14333 -13.07972 -12.83291 -12.61545 -12.44184 -12.33579 -12.04089 -12.00188 -11.83807 -11.65109 -11.48340 -11.15692 -11.12861 -10.87721 -10.44883 -10.33401 -9.02058 -8.04862 -6.26833 1.35915 1.38047 1.46018 2.38890 2.92337 3.14484 3.57406 3.82952 3.89466 4.00433 4.07945 4.26504 4.40585 4.53010 4.61218 4.63577 4.72273 4.76223 4.79586 4.82585 4.90845 4.96928 5.02043 5.04578 5.10331 5.21496 5.23342 5.27013 5.41707 5.44587 5.48760 5.56845 5.67121 5.80308 6.13187 6.23079 6.25130 6.42927 6.86757 7.04065 7.44659 8.91223 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020814 B = 0.007829 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.938110 B = 3575.660738 C = 4428.092077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.225 3.775 4 H 0.001 0.999 5 C -0.556 4.556 6 H 0.049 0.951 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.945 3.055 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.679 5.679 14 C 0.095 3.905 15 H 0.016 0.984 16 C -0.126 4.126 17 C -0.107 4.107 18 H 0.082 0.918 19 C -0.116 4.116 20 C -0.147 4.147 21 C 0.049 3.951 22 O -0.400 6.400 23 C 0.068 3.932 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.029 0.971 27 H 0.059 0.941 28 H 0.026 0.974 29 H 0.261 0.739 30 H 0.327 0.673 31 H 0.032 0.968 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.047 0.953 39 H 0.111 0.889 40 H 0.035 0.965 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.432 10.713 9.303 14.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C 0.116 3.884 4 H 0.019 0.981 5 C -0.595 4.595 6 H 0.067 0.933 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.309 5.309 14 C -0.015 4.015 15 H 0.034 0.966 16 C -0.184 4.184 17 C -0.127 4.127 18 H 0.101 0.899 19 C -0.154 4.154 20 C -0.184 4.184 21 C -0.028 4.028 22 O -0.319 6.319 23 C -0.009 4.009 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.145 0.855 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.065 0.935 39 H 0.129 0.871 40 H 0.054 0.946 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.070 10.434 9.194 14.490 hybrid contribution 2.100 -0.064 -0.961 2.311 sum -1.970 10.370 8.233 13.386 Atomic orbital electron populations 1.21553 0.96416 0.99627 1.00510 1.21377 0.94438 0.98607 0.99877 1.18899 0.91314 0.91330 0.86828 0.98090 1.22180 0.94166 1.37780 1.05374 0.93274 1.25624 1.01744 0.94936 0.95606 1.70004 1.36236 1.38895 1.09828 0.85766 0.81531 0.78446 0.77144 1.20190 1.20947 1.19755 1.60954 1.55104 1.06796 1.08092 1.21339 0.96789 0.88436 0.94940 0.96608 1.21718 0.96136 1.00313 1.00258 1.21802 0.97538 0.96734 0.96581 0.89919 1.21672 1.02870 0.93064 0.97761 1.22156 0.97725 1.01593 0.96961 1.22833 0.96833 0.80335 1.02762 1.87889 1.92593 1.19781 1.31628 1.22565 0.95655 0.96937 0.85788 0.93817 0.92250 0.95175 0.92209 0.95500 0.92955 0.85481 0.94911 0.91811 0.91338 0.89858 0.92570 0.90810 0.88699 0.93465 0.87069 0.94636 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.80 71.98 0.71 -4.33 16 2 C -0.10 -5.05 5.45 30.60 0.17 -4.88 16 3 C 0.23 11.16 1.77 44.17 0.08 11.24 16 4 H 0.00 0.06 7.13 -2.39 -0.02 0.05 16 5 C -0.56 -29.99 8.26 25.60 0.21 -29.77 16 6 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 7 C 0.02 1.15 5.29 84.65 0.45 1.59 16 8 N -0.91 -52.21 11.29 21.45 0.24 -51.97 16 9 Si 0.94 43.62 29.54 68.60 2.03 45.65 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 N -0.68 -27.85 5.50 -473.31 -2.61 -30.45 16 14 C 0.10 3.42 2.03 44.91 0.09 3.52 16 15 H 0.02 0.67 7.62 -2.39 -0.02 0.65 16 16 C -0.13 -4.04 8.91 71.98 0.64 -3.40 16 17 C -0.11 -3.16 2.11 -10.70 -0.02 -3.18 16 18 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 19 C -0.12 -2.73 4.87 30.72 0.15 -2.58 16 20 C -0.15 -2.83 6.14 30.69 0.19 -2.64 16 21 C 0.05 1.07 6.84 72.01 0.49 1.56 16 22 O -0.40 -11.93 10.77 -148.98 -1.60 -13.54 16 23 C 0.07 2.16 5.83 72.01 0.42 2.58 16 24 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.06 2.28 7.75 -2.39 -0.02 2.26 16 26 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.06 3.27 5.95 -2.39 -0.01 3.25 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.33 13.36 5.90 -89.69 -0.53 12.83 16 31 H 0.03 1.19 7.40 -2.39 -0.02 1.17 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 1.83 6.85 -2.39 -0.02 1.82 16 34 H 0.08 1.75 6.77 -2.39 -0.02 1.74 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.09 1.37 8.14 -2.39 -0.02 1.36 16 38 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 2.89 6.32 -2.39 -0.02 2.88 16 Total: -1.00 -59.04 313.03 2.08 -56.96 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.45 Total: 23.65 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 3.57 Total: -30.30 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.36 Total: -82.42 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -1.60 Total: -13.54 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -59.04 2.08 -56.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309222573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.968 kcal (2) G-P(sol) polarization free energy of solvation -59.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds