Wall clock time and date at job start Sun Mar 29 2020 23:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46534 * 2 1 4 4 H 1.08998 * 109.47110 * 305.26298 * 3 2 1 5 5 C 1.50706 * 109.47052 * 185.27099 * 3 2 1 6 6 H 1.08000 * 120.00071 * 240.00460 * 5 3 2 7 7 C 1.37875 * 119.99797 * 59.99297 * 5 3 2 8 8 N 1.31515 * 120.00236 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99935 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47057 * 60.00300 * 9 7 5 11 11 H 1.48500 * 109.47240 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47139 * 300.00065 * 9 7 5 13 13 N 1.46901 * 109.47486 * 65.27128 * 3 2 1 14 14 C 1.46898 * 110.99864 * 204.74258 * 13 3 2 15 15 H 1.08998 * 109.47413 * 327.98199 * 14 13 3 16 16 C 1.53007 * 109.47254 * 87.98399 * 14 13 3 17 17 C 1.52998 * 109.47213 * 207.98093 * 14 13 3 18 18 H 1.09000 * 109.52078 * 60.12647 * 17 14 13 19 19 C 1.53178 * 109.57562 * 180.28390 * 17 14 13 20 20 C 1.53181 * 109.03302 * 176.91638 * 19 17 14 21 21 C 1.53092 * 109.16628 * 303.01997 * 20 19 17 22 22 O 1.42903 * 109.41313 * 57.61164 * 21 20 19 23 23 C 1.42906 * 114.09728 * 298.84125 * 22 21 20 24 24 H 1.08993 * 109.47350 * 55.24981 * 1 2 3 25 25 H 1.08999 * 109.46652 * 175.25218 * 1 2 3 26 26 H 1.09008 * 109.46983 * 295.24590 * 1 2 3 27 27 H 1.08995 * 109.46890 * 240.00363 * 2 1 3 28 28 H 1.08995 * 109.46997 * 119.99414 * 2 1 3 29 29 H 0.97000 * 120.00301 * 179.97438 * 8 7 5 30 30 H 1.00901 * 110.99432 * 328.69413 * 13 3 2 31 31 H 1.09004 * 109.46750 * 303.06873 * 16 14 13 32 32 H 1.08999 * 109.47171 * 63.06514 * 16 14 13 33 33 H 1.08996 * 109.46930 * 183.06859 * 16 14 13 34 34 H 1.08997 * 109.54329 * 296.78314 * 19 17 14 35 35 H 1.08997 * 109.54134 * 56.96312 * 19 17 14 36 36 H 1.09005 * 109.52388 * 62.93050 * 20 19 17 37 37 H 1.08998 * 109.51826 * 183.11127 * 20 19 17 38 38 H 1.09000 * 109.47957 * 297.62846 * 21 20 19 39 39 H 1.08998 * 109.47800 * 177.59207 * 21 20 19 40 40 H 1.08994 * 109.47770 * 181.14576 * 23 22 21 41 41 H 1.09007 * 109.47753 * 301.17736 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6016 1.9828 -0.8391 5 6 3.5413 1.4447 -0.1305 6 1 4.1500 1.8880 0.6436 7 6 4.1378 0.8805 -1.2382 8 7 3.3965 0.3408 -2.1810 9 14 5.9987 0.8825 -1.3997 10 1 6.5956 0.1460 -0.2566 11 1 6.3860 0.2211 -2.6716 12 1 6.4941 2.2824 -1.3995 13 7 1.6569 2.0974 1.2580 14 6 1.5831 3.5550 1.0914 15 1 2.3168 3.8738 0.3511 16 6 0.1806 3.9442 0.6199 17 6 1.8789 4.2368 2.4288 18 1 2.8788 3.9619 2.7645 19 6 1.7957 5.7569 2.2595 20 6 2.0174 6.4240 3.6205 21 6 0.9821 5.8926 4.6153 22 8 1.0931 4.4706 4.7022 23 6 0.8490 3.7898 3.4697 24 1 -0.3634 0.5857 -0.8443 25 1 -0.3632 -1.0242 -0.0851 26 1 -0.3633 0.4383 0.9296 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 3.8161 -0.0558 -2.9605 30 1 0.7847 1.7287 1.6065 31 1 -0.0513 3.4161 -0.3050 32 1 -0.5478 3.6745 1.3847 33 1 0.1417 5.0192 0.4440 34 1 2.5641 6.0886 1.5613 35 1 0.8123 6.0276 1.8751 36 1 3.0202 6.1933 3.9802 37 1 1.9051 7.5034 3.5196 38 1 -0.0187 6.1590 4.2754 39 1 1.1620 6.3320 5.5965 40 1 0.9329 2.7144 3.6257 41 1 -0.1536 4.0288 3.1149 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309222577.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:05:55 Heat of formation + Delta-G solvation = -68.202704 kcal Electronic energy + Delta-G solvation = -18613.657583 eV Core-core repulsion = 15913.593267 eV Total energy + Delta-G solvation = -2700.064317 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.45766 -36.86245 -34.36870 -32.62632 -31.60944 -29.86376 -28.03842 -26.15361 -24.78201 -24.09108 -22.73481 -20.95525 -19.55607 -18.87085 -16.21992 -15.97101 -15.91178 -14.85683 -14.82163 -14.49804 -14.16145 -13.85129 -13.29957 -12.89789 -12.77721 -12.46453 -12.38485 -11.93553 -11.76641 -11.68236 -11.20865 -10.99159 -10.83428 -10.65429 -10.63894 -10.46270 -10.37995 -9.99814 -9.93095 -9.65142 -9.48923 -9.06868 -9.03322 -8.32716 -7.18235 -5.94446 -3.98323 3.35374 3.39449 3.43253 4.09026 4.46485 4.88572 4.97753 5.00831 5.20801 5.31861 5.35249 5.47053 5.56157 5.63076 5.74092 5.80889 5.84488 5.91259 6.01668 6.14415 6.16714 6.18033 6.18884 6.34370 6.39362 6.48324 6.50458 6.71852 6.82506 6.86080 7.12060 7.21659 7.41097 7.54883 7.80757 7.94846 8.34742 8.42880 8.79787 9.09876 9.66644 11.10791 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024796 B = 0.006818 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.964726 B = 4105.831871 C = 4759.368572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.220 3.780 4 H 0.002 0.998 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.681 5.681 14 C 0.097 3.903 15 H 0.083 0.917 16 C -0.184 4.184 17 C -0.106 4.106 18 H 0.083 0.917 19 C -0.121 4.121 20 C -0.155 4.155 21 C 0.061 3.939 22 O -0.387 6.387 23 C 0.067 3.933 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.099 0.901 28 H 0.041 0.959 29 H 0.259 0.741 30 H 0.316 0.684 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.395 8.978 8.026 13.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C 0.113 3.887 4 H 0.020 0.980 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.312 5.312 14 C -0.014 4.014 15 H 0.101 0.899 16 C -0.243 4.243 17 C -0.125 4.125 18 H 0.102 0.898 19 C -0.159 4.159 20 C -0.192 4.192 21 C -0.016 4.016 22 O -0.306 6.306 23 C -0.009 4.009 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.117 0.883 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.134 0.866 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.674 8.776 8.250 13.314 hybrid contribution 0.112 0.222 -1.052 1.081 sum -5.562 8.998 7.198 12.794 Atomic orbital electron populations 1.21880 0.99680 0.99626 0.99477 1.21770 0.91151 1.00509 1.03043 1.19153 0.95243 0.89844 0.84484 0.98032 1.21194 0.91329 1.36307 1.04264 0.92150 1.24950 0.97999 0.95706 0.95879 1.69862 1.34742 1.39496 1.09627 0.86630 0.85949 0.78094 0.77102 1.20322 1.21507 1.20499 1.60769 1.35245 1.01773 1.33381 1.21367 0.95103 0.89940 0.94990 0.89852 1.22642 0.99108 1.01197 1.01304 1.21747 1.00922 0.93619 0.96253 0.89835 1.21716 1.02003 0.95691 0.96466 1.22179 1.00608 0.99919 0.96530 1.22501 0.97457 0.82195 0.99438 1.87918 1.91912 1.17909 1.32819 1.22742 0.96802 0.97585 0.83797 0.93972 0.94457 0.94646 0.88330 0.94061 0.93090 0.86640 0.92652 0.93114 0.92891 0.91544 0.91911 0.91147 0.91508 0.93776 0.89596 0.88161 0.93765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.65 37.16 0.36 -2.50 16 2 C -0.13 -2.95 5.37 -26.73 -0.14 -3.09 16 3 C 0.22 5.35 1.84 -68.86 -0.13 5.22 16 4 H 0.00 0.06 7.33 -51.93 -0.38 -0.33 16 5 C -0.49 -13.45 8.50 -34.44 -0.29 -13.74 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.44 11.29 55.43 0.63 -24.81 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 N -0.68 -13.88 5.52 -100.95 -0.56 -14.43 16 14 C 0.10 1.74 2.22 -67.71 -0.15 1.59 16 15 H 0.08 1.73 7.60 -51.93 -0.39 1.34 16 16 C -0.18 -2.84 8.44 37.16 0.31 -2.53 16 17 C -0.11 -1.67 2.41 -90.48 -0.22 -1.89 16 18 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 19 C -0.12 -1.60 5.04 -26.55 -0.13 -1.73 16 20 C -0.15 -1.79 6.14 -26.59 -0.16 -1.95 16 21 C 0.06 0.72 6.84 37.20 0.25 0.97 16 22 O -0.39 -5.82 10.77 -35.23 -0.38 -6.20 16 23 C 0.07 0.99 5.54 37.21 0.21 1.20 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.60 6.60 -51.92 -0.34 0.26 16 27 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.32 5.91 5.75 -39.29 -0.23 5.69 16 31 H 0.05 0.94 7.63 -51.93 -0.40 0.54 16 32 H 0.05 0.71 6.22 -51.93 -0.32 0.39 16 33 H 0.05 0.73 6.53 -51.93 -0.34 0.39 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.78 6.35 -51.93 -0.33 0.45 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.10 1.58 7.43 -51.93 -0.39 1.19 16 41 H 0.04 0.61 6.25 -51.92 -0.32 0.28 16 LS Contribution 308.74 15.07 4.65 4.65 Total: -1.00 -28.05 308.74 -7.97 -36.01 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.10 Total: 5.25 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -0.19 Total: -17.03 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.07 Total: -39.24 kcal Atomic # 8 Polarization: -5.82 SS G_CDS: -0.38 Total: -6.20 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.05 -7.97 -36.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309222577.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.188 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds