Wall clock time and date at job start Sun Mar 29 2020 22:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46964 * 2 1 4 4 H 1.09001 * 109.46992 * 55.49941 * 3 2 1 5 5 N 1.46896 * 109.47348 * 295.49886 * 3 2 1 6 6 C 1.46905 * 111.00001 * 154.37254 * 5 3 2 7 7 H 1.09000 * 109.47040 * 35.95903 * 6 5 3 8 8 C 1.52999 * 109.46729 * 275.95916 * 6 5 3 9 9 C 1.52993 * 109.47117 * 155.96159 * 6 5 3 10 10 C 1.50701 * 109.47243 * 294.99710 * 9 6 5 11 11 H 1.07995 * 120.00105 * 0.02562 * 10 9 6 12 12 C 1.37879 * 119.99826 * 179.97438 * 10 9 6 13 13 N 1.31509 * 120.00384 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99691 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47219 * 60.00039 * 14 12 10 16 16 H 1.48500 * 109.47252 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47045 * 300.00246 * 14 12 10 18 18 C 1.53006 * 109.46807 * 175.49888 * 3 2 1 19 19 H 1.09003 * 110.27228 * 175.64214 * 18 3 2 20 20 C 1.54942 * 110.30916 * 297.83283 * 18 3 2 21 21 C 1.55306 * 100.94166 * 155.36246 * 20 18 3 22 22 C 1.54385 * 102.25081 * 325.86624 * 21 20 18 23 23 O 1.43243 * 107.58722 * 21.36101 * 22 21 20 24 24 H 1.09004 * 109.47153 * 295.49321 * 1 2 3 25 25 H 1.08998 * 109.47709 * 55.49792 * 1 2 3 26 26 H 1.09000 * 109.47354 * 175.49905 * 1 2 3 27 27 H 1.08995 * 109.47280 * 120.00706 * 2 1 3 28 28 H 1.09002 * 109.46655 * 240.00457 * 2 1 3 29 29 H 1.00896 * 111.00187 * 278.32378 * 5 3 2 30 30 H 1.09003 * 109.46776 * 184.94108 * 8 6 5 31 31 H 1.08990 * 109.47560 * 304.94957 * 8 6 5 32 32 H 1.09003 * 109.47227 * 64.95420 * 8 6 5 33 33 H 1.09003 * 109.47179 * 54.99931 * 9 6 5 34 34 H 1.09001 * 109.47503 * 175.00025 * 9 6 5 35 35 H 0.96994 * 120.00064 * 179.97438 * 13 12 10 36 36 H 1.09002 * 111.12652 * 273.27973 * 20 18 3 37 37 H 1.08998 * 111.12683 * 37.44783 * 20 18 3 38 38 H 1.09002 * 110.84732 * 207.68085 * 21 20 18 39 39 H 1.09002 * 111.02260 * 84.13685 * 21 20 18 40 40 H 1.08998 * 109.83295 * 261.83927 * 22 21 20 41 41 H 1.09005 * 109.82591 * 140.86764 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6122 1.9791 0.8469 5 7 1.6410 2.1029 -1.2500 6 6 1.5492 3.5581 -1.0706 7 1 2.3288 3.8895 -0.3847 8 6 0.1775 3.9152 -0.4946 9 6 1.7308 4.2511 -2.4224 10 6 3.1265 3.9997 -2.9323 11 1 3.8149 3.4047 -2.3506 12 6 3.5241 4.5283 -4.1421 13 7 2.6856 5.2524 -4.8507 14 14 5.2539 4.2161 -4.7745 15 1 5.4663 2.7551 -4.9342 16 1 5.4303 4.8888 -6.0865 17 1 6.2405 4.7566 -3.8050 18 6 3.5658 1.4439 0.1132 19 1 3.9492 2.4615 0.0370 20 6 4.0063 0.7998 1.4518 21 6 5.4395 0.3222 1.0915 22 6 5.2908 -0.0683 -0.3947 23 8 4.1424 0.6161 -0.9092 24 1 -0.3634 0.4423 0.9276 25 1 -0.3634 0.5821 -0.8469 26 1 -0.3634 -1.0245 -0.0806 27 1 1.8933 -0.5139 0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 2.2747 1.8704 -2.0000 30 1 0.0760 4.9993 -0.4435 31 1 -0.6035 3.5070 -1.1360 32 1 0.0828 3.4940 0.5063 33 1 1.0069 3.8544 -3.1343 34 1 1.5747 5.3234 -2.3049 35 1 2.9655 5.6246 -5.7016 36 1 4.0281 1.5373 2.2542 37 1 3.3655 -0.0425 1.7121 38 1 5.7233 -0.5414 1.6929 39 1 6.1621 1.1297 1.2100 40 1 5.1491 -1.1455 -0.4816 41 1 6.1801 0.2347 -0.9474 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309226431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:52 Heat of formation + Delta-G solvation = -70.832297 kcal Electronic energy + Delta-G solvation = -18733.761533 eV Core-core repulsion = 16033.583188 eV Total energy + Delta-G solvation = -2700.178345 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.59284 -36.71164 -33.90232 -32.20001 -31.87892 -29.97296 -28.24318 -27.31136 -24.54955 -22.91156 -22.22499 -21.51707 -19.61060 -19.30322 -16.54359 -16.28453 -15.84665 -15.06512 -14.68235 -14.53410 -14.02377 -13.84979 -13.36307 -12.99577 -12.65709 -12.15391 -11.91524 -11.71549 -11.59876 -11.49692 -11.27672 -11.18730 -11.09080 -10.94010 -10.87799 -10.65444 -10.45139 -10.27178 -10.12698 -10.04439 -9.21732 -9.14256 -8.97815 -8.30981 -7.46878 -5.94425 -3.96139 3.37332 3.41278 3.45280 4.00648 4.51380 4.56424 4.82077 5.01768 5.06906 5.23922 5.28281 5.38585 5.43440 5.61487 5.70122 5.71963 5.77584 5.84933 5.97836 6.00233 6.03622 6.09204 6.11878 6.26437 6.29732 6.34249 6.52897 6.57538 6.70185 6.80611 6.99339 7.03264 7.30802 7.64258 7.74060 8.05646 8.17383 8.43185 8.49400 9.10156 9.67735 11.16665 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.008961 C = 0.006676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.668558 B = 3123.739678 C = 4193.044889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.107 4.107 3 C 0.092 3.908 4 H 0.077 0.923 5 N -0.672 5.672 6 C 0.086 3.914 7 H 0.025 0.975 8 C -0.135 4.135 9 C 0.021 3.979 10 C -0.518 4.518 11 H 0.054 0.946 12 C 0.060 3.940 13 N -0.894 5.894 14 Si 0.888 3.112 15 H -0.275 1.275 16 H -0.289 1.289 17 H -0.280 1.280 18 C 0.051 3.949 19 H 0.072 0.928 20 C -0.153 4.153 21 C -0.156 4.156 22 C 0.052 3.948 23 O -0.366 6.366 24 H 0.041 0.959 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.363 0.637 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.034 0.966 33 H 0.025 0.975 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.242 -9.875 12.746 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 C -0.019 4.019 4 H 0.095 0.905 5 N -0.306 5.306 6 C -0.023 4.023 7 H 0.044 0.956 8 C -0.193 4.193 9 C -0.016 4.016 10 C -0.556 4.556 11 H 0.072 0.928 12 C -0.141 4.141 13 N -0.533 5.533 14 Si 0.716 3.284 15 H -0.201 1.201 16 H -0.215 1.215 17 H -0.206 1.206 18 C -0.008 4.008 19 H 0.089 0.911 20 C -0.191 4.191 21 C -0.193 4.193 22 C -0.025 4.025 23 O -0.285 6.285 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.186 0.814 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.466 -9.884 12.434 15.891 hybrid contribution 2.208 0.197 -0.113 2.219 sum 2.673 -9.687 12.321 15.900 Atomic orbital electron populations 1.21661 0.95816 1.00349 1.02145 1.21434 0.95964 0.95816 1.01253 1.21736 0.89513 0.95846 0.94823 0.90530 1.60629 1.55745 1.08629 1.05550 1.21609 0.94081 0.87246 0.99370 0.95649 1.21817 0.98662 0.99732 0.99089 1.19260 0.96922 0.95250 0.90166 1.21170 0.98092 1.32077 1.04264 0.92768 1.24964 0.97032 0.95228 0.96861 1.69952 1.35052 1.34643 1.13692 0.86717 0.85200 0.78555 0.77890 1.20079 1.21455 1.20559 1.23832 0.96419 0.94617 0.85919 0.91063 1.23382 0.96034 1.01319 0.98403 1.23102 0.97782 1.01729 0.96734 1.23046 0.89612 0.96726 0.93121 1.88467 1.42926 1.61089 1.35994 0.94024 0.90889 0.94148 0.93029 0.91387 0.81418 0.93410 0.92596 0.94734 0.95675 0.96274 0.93048 0.90442 0.89953 0.90549 0.90832 0.91828 0.91904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.85 37.16 0.37 -1.57 16 2 C -0.11 -1.52 5.20 -26.73 -0.14 -1.66 16 3 C 0.09 1.47 1.78 -67.71 -0.12 1.35 16 4 H 0.08 1.18 7.09 -51.93 -0.37 0.81 16 5 N -0.67 -13.13 5.41 -99.74 -0.54 -13.67 16 6 C 0.09 1.81 2.41 -67.71 -0.16 1.64 16 7 H 0.03 0.54 7.18 -51.93 -0.37 0.17 16 8 C -0.13 -2.44 9.36 37.16 0.35 -2.09 16 9 C 0.02 0.55 4.58 -27.89 -0.13 0.42 16 10 C -0.52 -14.51 8.12 -34.44 -0.28 -14.79 16 11 H 0.05 1.50 7.47 -52.49 -0.39 1.11 16 12 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 14 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 18 C 0.05 0.81 3.16 -25.70 -0.08 0.73 16 19 H 0.07 1.29 7.48 -51.93 -0.39 0.91 16 20 C -0.15 -1.84 6.47 -24.48 -0.16 -1.99 16 21 C -0.16 -1.74 7.02 -24.78 -0.17 -1.91 16 22 C 0.05 0.70 7.79 37.88 0.30 1.00 16 23 O -0.37 -6.38 9.72 -35.23 -0.34 -6.72 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 1.14 7.62 -51.93 -0.40 0.74 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.64 6.05 -51.93 -0.31 0.33 16 28 H 0.07 1.08 7.72 -51.93 -0.40 0.68 16 29 H 0.36 8.14 6.50 -39.29 -0.26 7.89 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.03 0.55 7.43 -51.93 -0.39 0.16 16 33 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.08 0.91 5.94 -51.93 -0.31 0.60 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 318.83 15.07 4.80 4.80 Total: -1.00 -29.67 318.83 -8.06 -37.74 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -7.37 Total: 4.31 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -0.33 Total: -17.23 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.20 Total: -40.03 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.34 Total: -6.72 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.67 -8.06 -37.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309226431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.097 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds