Wall clock time and date at job start Sun Mar 29 2020 22:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46964 * 2 1 4 4 H 1.09001 * 109.46992 * 55.49941 * 3 2 1 5 5 N 1.46896 * 109.47348 * 295.49886 * 3 2 1 6 6 C 1.46905 * 111.00001 * 154.37254 * 5 3 2 7 7 H 1.09000 * 109.47040 * 35.95903 * 6 5 3 8 8 C 1.52999 * 109.46729 * 275.95916 * 6 5 3 9 9 C 1.52993 * 109.47117 * 155.96159 * 6 5 3 10 10 C 1.50701 * 109.47243 * 294.99710 * 9 6 5 11 11 H 1.07995 * 120.00105 * 0.02562 * 10 9 6 12 12 C 1.37879 * 119.99826 * 179.97438 * 10 9 6 13 13 N 1.31509 * 120.00384 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 119.99691 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47219 * 60.00039 * 14 12 10 16 16 H 1.48500 * 109.47252 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47045 * 300.00246 * 14 12 10 18 18 C 1.53006 * 109.46807 * 175.49888 * 3 2 1 19 19 H 1.09003 * 110.27228 * 175.64214 * 18 3 2 20 20 C 1.54942 * 110.30916 * 297.83283 * 18 3 2 21 21 C 1.55306 * 100.94166 * 155.36246 * 20 18 3 22 22 C 1.54385 * 102.25081 * 325.86624 * 21 20 18 23 23 O 1.43243 * 107.58722 * 21.36101 * 22 21 20 24 24 H 1.09004 * 109.47153 * 295.49321 * 1 2 3 25 25 H 1.08998 * 109.47709 * 55.49792 * 1 2 3 26 26 H 1.09000 * 109.47354 * 175.49905 * 1 2 3 27 27 H 1.08995 * 109.47280 * 120.00706 * 2 1 3 28 28 H 1.09002 * 109.46655 * 240.00457 * 2 1 3 29 29 H 1.00896 * 111.00187 * 278.32378 * 5 3 2 30 30 H 1.09003 * 109.46776 * 184.94108 * 8 6 5 31 31 H 1.08990 * 109.47560 * 304.94957 * 8 6 5 32 32 H 1.09003 * 109.47227 * 64.95420 * 8 6 5 33 33 H 1.09003 * 109.47179 * 54.99931 * 9 6 5 34 34 H 1.09001 * 109.47503 * 175.00025 * 9 6 5 35 35 H 0.96994 * 120.00064 * 179.97438 * 13 12 10 36 36 H 1.09002 * 111.12652 * 273.27973 * 20 18 3 37 37 H 1.08998 * 111.12683 * 37.44783 * 20 18 3 38 38 H 1.09002 * 110.84732 * 207.68085 * 21 20 18 39 39 H 1.09002 * 111.02260 * 84.13685 * 21 20 18 40 40 H 1.08998 * 109.83295 * 261.83927 * 22 21 20 41 41 H 1.09005 * 109.82591 * 140.86764 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6122 1.9791 0.8469 5 7 1.6410 2.1029 -1.2500 6 6 1.5492 3.5581 -1.0706 7 1 2.3288 3.8895 -0.3847 8 6 0.1775 3.9152 -0.4946 9 6 1.7308 4.2511 -2.4224 10 6 3.1265 3.9997 -2.9323 11 1 3.8149 3.4047 -2.3506 12 6 3.5241 4.5283 -4.1421 13 7 2.6856 5.2524 -4.8507 14 14 5.2539 4.2161 -4.7745 15 1 5.4663 2.7551 -4.9342 16 1 5.4303 4.8888 -6.0865 17 1 6.2405 4.7566 -3.8050 18 6 3.5658 1.4439 0.1132 19 1 3.9492 2.4615 0.0370 20 6 4.0063 0.7998 1.4518 21 6 5.4395 0.3222 1.0915 22 6 5.2908 -0.0683 -0.3947 23 8 4.1424 0.6161 -0.9092 24 1 -0.3634 0.4423 0.9276 25 1 -0.3634 0.5821 -0.8469 26 1 -0.3634 -1.0245 -0.0806 27 1 1.8933 -0.5139 0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 2.2747 1.8704 -2.0000 30 1 0.0760 4.9993 -0.4435 31 1 -0.6035 3.5070 -1.1360 32 1 0.0828 3.4940 0.5063 33 1 1.0069 3.8544 -3.1343 34 1 1.5747 5.3234 -2.3049 35 1 2.9655 5.6246 -5.7016 36 1 4.0281 1.5373 2.2542 37 1 3.3655 -0.0425 1.7121 38 1 5.7233 -0.5414 1.6929 39 1 6.1621 1.1297 1.2100 40 1 5.1491 -1.1455 -0.4816 41 1 6.1801 0.2347 -0.9474 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309226431.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:51 Heat of formation + Delta-G solvation = -89.559122 kcal Electronic energy + Delta-G solvation = -18734.573589 eV Core-core repulsion = 16033.583188 eV Total energy + Delta-G solvation = -2700.990401 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.78066 -38.21572 -35.55159 -34.11965 -32.95885 -31.23951 -29.67112 -29.20439 -25.83066 -24.89181 -23.36005 -22.51634 -21.11264 -20.78352 -18.49694 -17.62993 -17.06949 -16.61495 -16.52108 -15.80736 -15.47126 -15.18560 -14.58088 -14.44324 -14.05904 -13.64647 -13.49889 -13.28714 -13.09545 -12.80580 -12.64241 -12.60980 -12.55383 -12.34273 -12.30674 -12.24236 -11.95652 -11.76794 -11.48628 -11.32986 -11.15004 -10.92257 -10.56299 -10.42937 -9.00776 -8.18531 -6.27073 1.35521 1.38727 1.46396 2.39817 2.87867 3.14171 3.56090 3.64952 3.84985 3.98943 4.06305 4.21977 4.33007 4.36543 4.51421 4.55677 4.64642 4.72107 4.77463 4.82282 4.85971 4.94026 4.94584 4.99432 5.06098 5.14120 5.25470 5.26348 5.34072 5.38521 5.45540 5.54018 5.63332 5.68492 5.86457 6.17001 6.24154 6.56540 6.72443 6.87688 7.40787 8.93059 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.008961 C = 0.006676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.668558 B = 3123.739678 C = 4193.044889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 C 0.091 3.909 4 H 0.088 0.912 5 N -0.674 5.674 6 C 0.096 3.904 7 H 0.020 0.980 8 C -0.126 4.126 9 C 0.028 3.972 10 C -0.525 4.525 11 H 0.053 0.947 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.955 3.045 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.271 1.271 18 C 0.047 3.953 19 H 0.039 0.961 20 C -0.143 4.143 21 C -0.147 4.147 22 C 0.040 3.960 23 O -0.399 6.399 24 H 0.055 0.945 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.344 0.656 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.063 0.937 33 H -0.006 1.006 34 H -0.006 1.006 35 H 0.262 0.738 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.028 -11.460 14.903 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.137 4.137 3 C -0.019 4.019 4 H 0.106 0.894 5 N -0.305 5.305 6 C -0.013 4.013 7 H 0.038 0.962 8 C -0.184 4.184 9 C -0.009 4.009 10 C -0.563 4.563 11 H 0.071 0.929 12 C -0.193 4.193 13 N -0.571 5.571 14 Si 0.781 3.219 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.196 1.196 18 C -0.012 4.012 19 H 0.056 0.944 20 C -0.181 4.181 21 C -0.185 4.185 22 C -0.037 4.037 23 O -0.319 6.319 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.163 0.837 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.013 0.987 34 H 0.012 0.988 35 H 0.071 0.929 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.250 -11.476 14.621 18.629 hybrid contribution 1.955 0.673 -0.792 2.214 sum 3.204 -10.803 13.829 17.838 Atomic orbital electron populations 1.21617 0.95197 1.01060 1.01739 1.21385 0.96395 0.94293 1.01595 1.21876 0.90103 0.96764 0.93194 0.89370 1.60676 1.55469 1.07564 1.06837 1.21403 0.95766 0.87957 0.96208 0.96156 1.21714 0.96319 1.00060 1.00288 1.19121 0.95294 0.94044 0.92426 1.21454 0.98915 1.31521 1.04387 0.92869 1.25824 1.01185 0.95062 0.97231 1.70078 1.37103 1.35774 1.14170 0.85653 0.80296 0.78484 0.77509 1.19683 1.20783 1.19606 1.23756 0.95933 0.93369 0.88128 0.94352 1.23354 0.96571 1.01856 0.96291 1.23094 0.97294 1.02888 0.95207 1.23287 0.88251 0.97364 0.94764 1.88440 1.44317 1.61499 1.37663 0.92570 0.93456 0.92576 0.90235 0.93379 0.83681 0.93181 0.93125 0.91797 0.98713 0.98776 0.92918 0.88925 0.88326 0.87516 0.90914 0.90173 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.85 71.98 0.71 -2.76 16 2 C -0.10 -2.62 5.20 30.59 0.16 -2.46 16 3 C 0.09 2.80 1.78 44.92 0.08 2.88 16 4 H 0.09 2.51 7.09 -2.39 -0.02 2.49 16 5 N -0.67 -26.66 5.41 -469.47 -2.54 -29.20 16 6 C 0.10 4.10 2.41 44.91 0.11 4.21 16 7 H 0.02 0.88 7.18 -2.39 -0.02 0.87 16 8 C -0.13 -4.47 9.36 71.98 0.67 -3.80 16 9 C 0.03 1.54 4.58 29.85 0.14 1.68 16 10 C -0.52 -30.33 8.12 25.60 0.21 -30.12 16 11 H 0.05 3.03 7.47 -2.91 -0.02 3.01 16 12 C 0.00 0.28 5.46 84.66 0.46 0.75 16 13 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 14 Si 0.96 46.20 29.54 68.60 2.03 48.23 16 15 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 16 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 17 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 18 C 0.05 1.45 3.16 31.26 0.10 1.55 16 19 H 0.04 1.42 7.48 -2.39 -0.02 1.40 16 20 C -0.14 -2.98 6.47 32.05 0.21 -2.77 16 21 C -0.15 -2.85 7.02 31.86 0.22 -2.63 16 22 C 0.04 1.01 7.79 72.45 0.56 1.58 16 23 O -0.40 -13.81 9.72 -148.98 -1.45 -15.26 16 24 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.05 1.43 7.62 -2.39 -0.02 1.41 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.08 1.67 6.05 -2.39 -0.01 1.66 16 28 H 0.05 1.47 7.72 -2.39 -0.02 1.45 16 29 H 0.34 15.94 6.50 -89.70 -0.58 15.36 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.89 7.43 -2.39 -0.02 1.87 16 33 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 34 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.10 1.75 5.94 -2.39 -0.01 1.73 16 38 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -66.05 318.83 2.35 -63.70 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.40 Total: 22.08 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 3.63 Total: -31.89 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -2.26 Total: -86.86 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -1.45 Total: -15.26 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -66.05 2.35 -63.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309226431.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.863 kcal (2) G-P(sol) polarization free energy of solvation -66.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds