Wall clock time and date at job start Sun Mar 29 2020 22:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46762 * 2 1 4 4 H 1.08998 * 109.46822 * 54.28574 * 3 2 1 5 5 N 1.46898 * 109.47210 * 294.28384 * 3 2 1 6 6 C 1.46900 * 110.99954 * 100.53613 * 5 3 2 7 7 H 1.08998 * 109.46993 * 317.86654 * 6 5 3 8 8 C 1.52993 * 109.47305 * 77.87176 * 6 5 3 9 9 C 1.53002 * 109.46869 * 197.87016 * 6 5 3 10 10 C 1.50702 * 109.46958 * 64.99962 * 9 6 5 11 11 H 1.07999 * 120.00470 * 359.97438 * 10 9 6 12 12 C 1.37880 * 119.99992 * 180.02562 * 10 9 6 13 13 N 1.31519 * 119.99893 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99954 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47668 * 59.99645 * 14 12 10 16 16 H 1.48504 * 109.46865 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46947 * 299.99280 * 14 12 10 18 18 C 1.53005 * 109.46822 * 174.28381 * 3 2 1 19 19 H 1.08998 * 109.86880 * 173.99289 * 18 3 2 20 20 C 1.54099 * 109.87620 * 295.00052 * 18 3 2 21 21 C 1.54818 * 104.18892 * 121.45563 * 20 18 3 22 22 C 1.55001 * 102.08870 * 20.87744 * 21 20 18 23 23 O 1.43742 * 109.87841 * 52.83117 * 18 3 2 24 24 H 1.09000 * 109.47046 * 177.17471 * 1 2 3 25 25 H 1.09005 * 109.46714 * 297.17594 * 1 2 3 26 26 H 1.08996 * 109.47272 * 57.17350 * 1 2 3 27 27 H 1.09001 * 109.46899 * 240.00668 * 2 1 3 28 28 H 1.08994 * 109.47322 * 120.00256 * 2 1 3 29 29 H 1.00902 * 110.99344 * 224.48970 * 5 3 2 30 30 H 1.08994 * 109.47113 * 179.97438 * 8 6 5 31 31 H 1.09001 * 109.46985 * 300.00115 * 8 6 5 32 32 H 1.09007 * 109.47520 * 59.99843 * 8 6 5 33 33 H 1.08995 * 109.47050 * 305.00304 * 9 6 5 34 34 H 1.08993 * 109.47286 * 184.99811 * 9 6 5 35 35 H 0.96993 * 119.99936 * 180.02562 * 13 12 10 36 36 H 1.09004 * 110.49170 * 240.12994 * 20 18 3 37 37 H 1.08994 * 110.49339 * 2.78028 * 20 18 3 38 38 H 1.08994 * 110.90653 * 139.07234 * 21 20 18 39 39 H 1.08997 * 110.90650 * 262.65183 * 21 20 18 40 40 H 1.09003 * 110.61408 * 81.48122 * 22 21 20 41 41 H 1.08997 * 110.61409 * 204.47399 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5954 1.9850 0.8344 5 7 1.6661 2.0941 -1.2624 6 6 0.4846 2.9486 -1.0841 7 1 -0.2440 2.4349 -0.4571 8 6 0.8999 4.2598 -0.4139 9 6 -0.1384 3.2486 -2.4490 10 6 -0.6584 1.9707 -3.0555 11 1 -0.5545 1.0379 -2.5212 12 6 -1.2659 1.9923 -4.2931 13 7 -1.3920 3.1282 -4.9440 14 14 -1.9110 0.4085 -5.0445 15 1 -2.9397 -0.1808 -4.1502 16 1 -2.5157 0.6996 -6.3693 17 1 -0.7911 -0.5523 -5.2115 18 6 3.5632 1.4450 0.1437 19 1 3.9437 2.4609 0.0379 20 6 3.9605 0.8773 1.5201 21 6 4.8636 -0.3346 1.1844 22 6 5.3192 -0.0095 -0.2610 23 8 4.1497 0.5938 -0.8551 24 1 -0.3633 -1.0264 -0.0507 25 1 -0.3633 0.4694 0.9143 26 1 -0.3633 0.5571 -0.8635 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 2.4395 2.6206 -1.6404 30 1 0.0233 4.8940 -0.2820 31 1 1.3439 4.0461 0.5584 32 1 1.6286 4.7736 -1.0410 33 1 0.6161 3.6816 -3.1055 34 1 -0.9608 3.9533 -2.3260 35 1 -1.8197 3.1434 -5.8144 36 1 4.5160 1.6197 2.0932 37 1 3.0763 0.5536 2.0691 38 1 5.7176 -0.3822 1.8600 39 1 4.2944 -1.2637 1.2136 40 1 6.1515 0.6943 -0.2519 41 1 5.5922 -0.9216 -0.7916 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309226433.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:54 Heat of formation + Delta-G solvation = -62.635397 kcal Electronic energy + Delta-G solvation = -18631.757732 eV Core-core repulsion = 15931.934832 eV Total energy + Delta-G solvation = -2699.822900 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.72231 -36.96282 -33.59432 -32.21923 -31.85906 -30.12660 -28.28226 -27.14996 -24.51220 -22.89572 -22.54839 -21.35956 -19.90176 -19.28901 -16.51344 -16.22341 -15.86586 -15.35189 -14.77383 -14.39311 -13.83711 -13.67401 -13.25955 -13.14262 -12.69290 -12.26442 -11.90861 -11.78607 -11.72226 -11.61072 -11.36602 -11.19190 -11.10284 -10.85871 -10.68925 -10.53420 -10.45664 -10.23296 -10.14394 -9.91480 -9.43774 -9.06788 -8.73662 -8.16391 -7.40402 -5.79283 -3.76072 3.47373 3.50599 3.55158 3.92518 4.52948 4.64539 4.67918 4.87917 4.96821 5.11822 5.25529 5.34549 5.55182 5.58455 5.63345 5.69233 5.71387 5.77562 5.85169 5.92005 5.95263 6.00574 6.06710 6.11415 6.26296 6.43285 6.49495 6.54809 6.71207 6.92265 7.03774 7.10454 7.15008 7.69678 7.82984 8.15060 8.20180 8.32455 8.70153 9.30239 9.84958 11.33020 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026274 B = 0.006639 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.452151 B = 4216.302216 C = 4584.064766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.099 4.099 3 C 0.090 3.910 4 H 0.052 0.948 5 N -0.651 5.651 6 C 0.083 3.917 7 H 0.071 0.929 8 C -0.183 4.183 9 C 0.033 3.967 10 C -0.486 4.486 11 H 0.065 0.935 12 C 0.049 3.951 13 N -0.906 5.906 14 Si 0.887 3.113 15 H -0.280 1.280 16 H -0.292 1.292 17 H -0.278 1.278 18 C 0.070 3.930 19 H 0.061 0.939 20 C -0.151 4.151 21 C -0.153 4.153 22 C 0.043 3.957 23 O -0.351 6.351 24 H 0.040 0.960 25 H 0.036 0.964 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.334 0.666 30 H 0.054 0.946 31 H 0.035 0.965 32 H 0.049 0.951 33 H 0.015 0.985 34 H 0.016 0.984 35 H 0.256 0.744 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.414 -4.181 13.839 18.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.137 4.137 3 C -0.021 4.021 4 H 0.070 0.930 5 N -0.282 5.282 6 C -0.026 4.026 7 H 0.089 0.911 8 C -0.242 4.242 9 C -0.005 4.005 10 C -0.525 4.525 11 H 0.083 0.917 12 C -0.150 4.150 13 N -0.547 5.547 14 Si 0.716 3.284 15 H -0.206 1.206 16 H -0.218 1.218 17 H -0.203 1.203 18 C 0.012 3.988 19 H 0.079 0.921 20 C -0.190 4.190 21 C -0.191 4.191 22 C -0.034 4.034 23 O -0.270 6.270 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.113 0.887 27 H 0.092 0.908 28 H 0.062 0.938 29 H 0.153 0.847 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.034 0.966 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.888 -4.680 13.220 17.754 hybrid contribution 0.179 0.024 0.260 0.316 sum 11.067 -4.655 13.480 18.051 Atomic orbital electron populations 1.22040 0.95999 1.01187 1.02994 1.21384 0.95911 0.95467 1.00971 1.21784 0.90666 0.96785 0.92850 0.93014 1.60501 1.07705 1.36001 1.23959 1.21983 0.91760 0.89032 0.99829 0.91103 1.22619 1.01386 1.00777 0.99410 1.19101 0.94960 0.96952 0.89441 1.21221 1.34869 0.94295 1.02099 0.91660 1.25001 0.96864 0.95644 0.97454 1.69959 1.45343 1.25066 1.14329 0.86738 0.79055 0.84461 0.78177 1.20586 1.21763 1.20336 1.23119 0.94769 0.93831 0.87101 0.92075 1.23016 1.00449 0.97711 0.97785 1.23116 0.99609 0.99002 0.97377 1.23519 0.89342 0.97801 0.92734 1.89053 1.40215 1.61997 1.35713 0.94055 0.94477 0.88671 0.90786 0.93810 0.84747 0.92648 0.94574 0.93232 0.96672 0.96608 0.93417 0.91142 0.90083 0.90754 0.90492 0.92740 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 8.91 37.16 0.33 -2.51 16 2 C -0.10 -1.59 5.16 -26.73 -0.14 -1.73 16 3 C 0.09 1.41 1.68 -67.71 -0.11 1.29 16 4 H 0.05 0.79 6.73 -51.93 -0.35 0.44 16 5 N -0.65 -12.47 5.53 -99.74 -0.55 -13.02 16 6 C 0.08 1.69 1.73 -67.72 -0.12 1.57 16 7 H 0.07 1.46 6.00 -51.93 -0.31 1.15 16 8 C -0.18 -3.12 9.14 37.15 0.34 -2.78 16 9 C 0.03 0.84 4.65 -27.88 -0.13 0.71 16 10 C -0.49 -13.76 8.81 -34.44 -0.30 -14.07 16 11 H 0.07 1.81 5.33 -52.49 -0.28 1.53 16 12 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 13 N -0.91 -27.90 13.29 55.43 0.74 -27.16 16 14 Si 0.89 22.60 29.54 -169.99 -5.02 17.58 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 17 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 18 C 0.07 0.95 2.93 -26.15 -0.08 0.88 16 19 H 0.06 0.81 8.06 -51.93 -0.42 0.40 16 20 C -0.15 -1.59 6.09 -25.20 -0.15 -1.74 16 21 C -0.15 -1.45 7.15 -24.72 -0.18 -1.63 16 22 C 0.04 0.48 7.72 38.21 0.29 0.77 16 23 O -0.35 -5.35 10.35 -35.23 -0.36 -5.71 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 1.98 3.77 -51.93 -0.20 1.78 16 27 H 0.07 1.36 7.73 -51.93 -0.40 0.96 16 28 H 0.04 0.60 6.61 -51.93 -0.34 0.26 16 29 H 0.33 6.35 7.97 -39.29 -0.31 6.04 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.53 7.17 -51.93 -0.37 0.16 16 32 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.84 6.62 -51.93 -0.34 0.50 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 313.30 15.07 4.72 4.72 Total: -1.00 -30.78 313.30 -7.93 -38.71 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.11 Total: 2.78 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -0.34 Total: -17.89 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.19 Total: -40.18 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.36 Total: -5.71 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.78 -7.93 -38.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309226433.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.927 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds