Wall clock time and date at job start Sun Mar 29 2020 22:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46762 * 2 1 4 4 H 1.08998 * 109.46822 * 54.28574 * 3 2 1 5 5 N 1.46898 * 109.47210 * 294.28384 * 3 2 1 6 6 C 1.46900 * 110.99954 * 100.53613 * 5 3 2 7 7 H 1.08998 * 109.46993 * 317.86654 * 6 5 3 8 8 C 1.52993 * 109.47305 * 77.87176 * 6 5 3 9 9 C 1.53002 * 109.46869 * 197.87016 * 6 5 3 10 10 C 1.50702 * 109.46958 * 64.99962 * 9 6 5 11 11 H 1.07999 * 120.00470 * 359.97438 * 10 9 6 12 12 C 1.37880 * 119.99992 * 180.02562 * 10 9 6 13 13 N 1.31519 * 119.99893 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99954 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47668 * 59.99645 * 14 12 10 16 16 H 1.48504 * 109.46865 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46947 * 299.99280 * 14 12 10 18 18 C 1.53005 * 109.46822 * 174.28381 * 3 2 1 19 19 H 1.08998 * 109.86880 * 173.99289 * 18 3 2 20 20 C 1.54099 * 109.87620 * 295.00052 * 18 3 2 21 21 C 1.54818 * 104.18892 * 121.45563 * 20 18 3 22 22 C 1.55001 * 102.08870 * 20.87744 * 21 20 18 23 23 O 1.43742 * 109.87841 * 52.83117 * 18 3 2 24 24 H 1.09000 * 109.47046 * 177.17471 * 1 2 3 25 25 H 1.09005 * 109.46714 * 297.17594 * 1 2 3 26 26 H 1.08996 * 109.47272 * 57.17350 * 1 2 3 27 27 H 1.09001 * 109.46899 * 240.00668 * 2 1 3 28 28 H 1.08994 * 109.47322 * 120.00256 * 2 1 3 29 29 H 1.00902 * 110.99344 * 224.48970 * 5 3 2 30 30 H 1.08994 * 109.47113 * 179.97438 * 8 6 5 31 31 H 1.09001 * 109.46985 * 300.00115 * 8 6 5 32 32 H 1.09007 * 109.47520 * 59.99843 * 8 6 5 33 33 H 1.08995 * 109.47050 * 305.00304 * 9 6 5 34 34 H 1.08993 * 109.47286 * 184.99811 * 9 6 5 35 35 H 0.96993 * 119.99936 * 180.02562 * 13 12 10 36 36 H 1.09004 * 110.49170 * 240.12994 * 20 18 3 37 37 H 1.08994 * 110.49339 * 2.78028 * 20 18 3 38 38 H 1.08994 * 110.90653 * 139.07234 * 21 20 18 39 39 H 1.08997 * 110.90650 * 262.65183 * 21 20 18 40 40 H 1.09003 * 110.61408 * 81.48122 * 22 21 20 41 41 H 1.08997 * 110.61409 * 204.47399 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5954 1.9850 0.8344 5 7 1.6661 2.0941 -1.2624 6 6 0.4846 2.9486 -1.0841 7 1 -0.2440 2.4349 -0.4571 8 6 0.8999 4.2598 -0.4139 9 6 -0.1384 3.2486 -2.4490 10 6 -0.6584 1.9707 -3.0555 11 1 -0.5545 1.0379 -2.5212 12 6 -1.2659 1.9923 -4.2931 13 7 -1.3920 3.1282 -4.9440 14 14 -1.9110 0.4085 -5.0445 15 1 -2.9397 -0.1808 -4.1502 16 1 -2.5157 0.6996 -6.3693 17 1 -0.7911 -0.5523 -5.2115 18 6 3.5632 1.4450 0.1437 19 1 3.9437 2.4609 0.0379 20 6 3.9605 0.8773 1.5201 21 6 4.8636 -0.3346 1.1844 22 6 5.3192 -0.0095 -0.2610 23 8 4.1497 0.5938 -0.8551 24 1 -0.3633 -1.0264 -0.0507 25 1 -0.3633 0.4694 0.9143 26 1 -0.3633 0.5571 -0.8635 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 2.4395 2.6206 -1.6404 30 1 0.0233 4.8940 -0.2820 31 1 1.3439 4.0461 0.5584 32 1 1.6286 4.7736 -1.0410 33 1 0.6161 3.6816 -3.1055 34 1 -0.9608 3.9533 -2.3260 35 1 -1.8197 3.1434 -5.8144 36 1 4.5160 1.6197 2.0932 37 1 3.0763 0.5536 2.0691 38 1 5.7176 -0.3822 1.8600 39 1 4.2944 -1.2637 1.2136 40 1 6.1515 0.6943 -0.2519 41 1 5.5922 -0.9216 -0.7916 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309226433.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:53 Heat of formation + Delta-G solvation = -82.898083 kcal Electronic energy + Delta-G solvation = -18632.636388 eV Core-core repulsion = 15931.934832 eV Total energy + Delta-G solvation = -2700.701556 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.75918 -38.38508 -35.29446 -34.04031 -32.83866 -31.48519 -29.63850 -28.92585 -25.77307 -24.87941 -23.58914 -22.28970 -21.35126 -20.73193 -18.38832 -17.44124 -17.00252 -16.65136 -16.32863 -15.95410 -15.20931 -14.92393 -14.59513 -14.34796 -14.26146 -13.73592 -13.53743 -13.27751 -13.12409 -13.05640 -12.60526 -12.57137 -12.44305 -12.26584 -12.23528 -11.93977 -11.91890 -11.65953 -11.63109 -11.30202 -11.04042 -10.68998 -10.46962 -10.43562 -8.87029 -8.05488 -6.08509 1.41222 1.44731 1.51587 2.49841 2.98228 3.27590 3.53503 3.68000 3.90873 4.04475 4.14388 4.18723 4.30833 4.44223 4.48147 4.52457 4.55012 4.67042 4.71147 4.86590 4.88167 4.93805 4.98194 4.99188 5.05500 5.20027 5.21614 5.25820 5.28470 5.34219 5.48145 5.60098 5.71723 5.78180 6.00760 6.11374 6.43546 6.64913 6.80443 7.07349 7.56594 9.06912 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026274 B = 0.006639 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.452151 B = 4216.302216 C = 4584.064766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.093 4.093 3 C 0.091 3.909 4 H 0.064 0.936 5 N -0.671 5.671 6 C 0.096 3.904 7 H 0.069 0.931 8 C -0.173 4.173 9 C 0.037 3.963 10 C -0.493 4.493 11 H 0.069 0.931 12 C -0.009 4.009 13 N -0.943 5.943 14 Si 0.951 3.049 15 H -0.268 1.268 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.070 3.930 19 H 0.062 0.938 20 C -0.146 4.146 21 C -0.146 4.146 22 C 0.034 3.966 23 O -0.388 6.388 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.331 0.669 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.047 0.953 33 H -0.015 1.015 34 H -0.010 1.010 35 H 0.256 0.744 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.470 -5.397 16.067 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.131 4.131 3 C -0.019 4.019 4 H 0.082 0.918 5 N -0.301 5.301 6 C -0.013 4.013 7 H 0.087 0.913 8 C -0.232 4.232 9 C 0.000 4.000 10 C -0.531 4.531 11 H 0.087 0.913 12 C -0.204 4.204 13 N -0.586 5.586 14 Si 0.778 3.222 15 H -0.193 1.193 16 H -0.214 1.214 17 H -0.201 1.201 18 C 0.012 3.988 19 H 0.080 0.920 20 C -0.184 4.184 21 C -0.183 4.183 22 C -0.042 4.042 23 O -0.308 6.308 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.150 0.850 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.003 0.997 34 H 0.008 0.992 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.952 -5.909 15.470 20.423 hybrid contribution -0.117 0.393 -0.433 0.596 sum 11.835 -5.516 15.037 19.915 Atomic orbital electron populations 1.21975 0.96888 1.01151 1.01997 1.21326 0.94990 0.95799 1.00964 1.21833 0.92703 0.96026 0.91319 0.91814 1.60341 1.07239 1.35878 1.26663 1.21618 0.92225 0.91022 0.96453 0.91312 1.22479 1.01481 0.98754 1.00504 1.18991 0.93511 0.95274 0.92236 1.21628 1.34015 0.95314 1.02148 0.91339 1.25852 0.97493 0.98827 0.98244 1.70097 1.46582 1.27220 1.14722 0.85707 0.78603 0.80470 0.77461 1.19326 1.21407 1.20102 1.23112 0.92891 0.94111 0.88730 0.91984 1.23008 1.01074 0.98451 0.95879 1.23099 1.00286 0.98390 0.96572 1.23746 0.88510 0.98136 0.93800 1.89019 1.41829 1.62578 1.37341 0.93347 0.92764 0.92492 0.93569 0.90904 0.85024 0.92692 0.91518 0.93366 0.99681 0.99170 0.93506 0.89120 0.89659 0.88175 0.90722 0.91590 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.41 8.91 71.98 0.64 -4.76 16 2 C -0.09 -2.83 5.16 30.60 0.16 -2.67 16 3 C 0.09 2.70 1.68 44.92 0.08 2.78 16 4 H 0.06 1.75 6.73 -2.39 -0.02 1.74 16 5 N -0.67 -25.63 5.53 -469.47 -2.59 -28.23 16 6 C 0.10 3.93 1.73 44.91 0.08 4.01 16 7 H 0.07 2.83 6.00 -2.39 -0.01 2.81 16 8 C -0.17 -5.73 9.14 71.98 0.66 -5.07 16 9 C 0.04 1.99 4.65 29.85 0.14 2.13 16 10 C -0.49 -28.57 8.81 25.60 0.23 -28.35 16 11 H 0.07 3.88 5.33 -2.91 -0.02 3.86 16 12 C -0.01 -0.53 5.46 84.65 0.46 -0.07 16 13 N -0.94 -59.73 13.29 21.45 0.28 -59.45 16 14 Si 0.95 47.09 29.54 68.60 2.03 49.12 16 15 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 17 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 18 C 0.07 1.74 2.93 30.97 0.09 1.84 16 19 H 0.06 1.53 8.06 -2.39 -0.02 1.51 16 20 C -0.15 -2.53 6.09 31.59 0.19 -2.34 16 21 C -0.15 -2.27 7.15 31.90 0.23 -2.04 16 22 C 0.03 0.69 7.72 72.67 0.56 1.25 16 23 O -0.39 -11.39 10.35 -148.98 -1.54 -12.93 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.05 1.57 8.14 -2.38 -0.02 1.56 16 26 H 0.06 2.35 3.77 -2.39 -0.01 2.34 16 27 H 0.05 1.67 7.73 -2.39 -0.02 1.65 16 28 H 0.07 1.80 6.61 -2.39 -0.02 1.78 16 29 H 0.33 12.72 7.97 -89.69 -0.72 12.00 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 31 H 0.07 1.80 7.17 -2.39 -0.02 1.79 16 32 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 33 H -0.02 -0.90 8.14 -2.39 -0.02 -0.91 16 34 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 35 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.42 6.62 -2.39 -0.02 1.41 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -68.04 313.30 1.96 -66.08 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.28 Total: 18.72 kcal Atomic # 6 Polarization: -36.81 SS G_CDS: 3.51 Total: -33.30 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -2.31 Total: -87.68 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -1.54 Total: -12.93 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -68.04 1.96 -66.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309226433.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.822 kcal (2) G-P(sol) polarization free energy of solvation -68.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds