Wall clock time and date at job start Sun Mar 29 2020 22:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47134 * 2 1 4 4 H 1.09000 * 109.47240 * 54.04099 * 3 2 1 5 5 N 1.46902 * 109.46946 * 294.03679 * 3 2 1 6 6 C 1.46903 * 110.99691 * 143.67430 * 5 3 2 7 7 H 1.08995 * 109.47546 * 48.87093 * 6 5 3 8 8 C 1.53005 * 109.46577 * 288.87602 * 6 5 3 9 9 C 1.52992 * 109.47272 * 168.87882 * 6 5 3 10 10 C 1.50704 * 109.47074 * 294.99862 * 9 6 5 11 11 H 1.08006 * 119.99675 * 359.97438 * 10 9 6 12 12 C 1.37878 * 120.00494 * 180.02562 * 10 9 6 13 13 N 1.31523 * 119.99471 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00393 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47023 * 59.99711 * 14 12 10 16 16 H 1.48504 * 109.47108 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46898 * 299.99702 * 14 12 10 18 18 C 1.53005 * 109.47094 * 174.03785 * 3 2 1 19 19 H 1.09000 * 110.34857 * 301.54169 * 18 3 2 20 20 C 1.54940 * 110.30868 * 179.39999 * 18 3 2 21 21 C 1.55307 * 100.93978 * 204.63961 * 20 18 3 22 22 C 1.54378 * 102.25546 * 34.13445 * 21 20 18 23 23 O 1.43239 * 107.58452 * 338.64416 * 22 21 20 24 24 H 1.09002 * 109.46921 * 295.92275 * 1 2 3 25 25 H 1.09003 * 109.47256 * 55.92027 * 1 2 3 26 26 H 1.09001 * 109.47101 * 175.92410 * 1 2 3 27 27 H 1.09007 * 109.47023 * 240.00474 * 2 1 3 28 28 H 1.09000 * 109.47417 * 120.00160 * 2 1 3 29 29 H 1.00893 * 111.00259 * 19.72007 * 5 3 2 30 30 H 1.09006 * 109.46634 * 185.30894 * 8 6 5 31 31 H 1.09003 * 109.47181 * 305.30675 * 8 6 5 32 32 H 1.08995 * 109.47504 * 65.31472 * 8 6 5 33 33 H 1.09004 * 109.47295 * 54.99342 * 9 6 5 34 34 H 1.08998 * 109.47524 * 174.99764 * 9 6 5 35 35 H 0.96999 * 119.99787 * 180.02562 * 13 12 10 36 36 H 1.09004 * 111.12349 * 322.55466 * 20 18 3 37 37 H 1.09002 * 111.12818 * 86.67800 * 20 18 3 38 38 H 1.08999 * 110.84863 * 275.93962 * 21 20 18 39 39 H 1.09006 * 110.84716 * 152.32417 * 21 20 18 40 40 H 1.08995 * 109.82994 * 219.13356 * 22 21 20 41 41 H 1.08998 * 109.83211 * 98.15550 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5922 1.9863 0.8318 5 7 1.6713 2.0922 -1.2649 6 6 1.3283 3.5045 -1.0509 7 1 2.1044 3.9801 -0.4512 8 6 -0.0116 3.5985 -0.3182 9 6 1.2215 4.2139 -2.4022 10 6 2.5724 4.2285 -3.0701 11 1 3.4223 3.7773 -2.5794 12 6 2.7238 4.8187 -4.3069 13 7 1.6890 5.3686 -4.9041 14 14 4.3984 4.8374 -5.1343 15 1 4.8629 3.4424 -5.3432 16 1 4.2947 5.5258 -6.4461 17 1 5.3687 5.5583 -4.2717 18 6 3.5627 1.4451 0.1498 19 1 3.8537 0.9416 1.0717 20 6 4.1018 2.8976 0.1371 21 6 5.5589 2.6669 -0.3484 22 6 5.3965 1.4772 -1.3187 23 8 4.1761 0.8074 -0.9817 24 1 -0.3633 0.4493 0.9243 25 1 -0.3634 0.5759 -0.8512 26 1 -0.3633 -1.0251 -0.0730 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 0.9147 1.6009 -1.7167 30 1 -0.3119 4.6436 -0.2428 31 1 -0.7681 3.0421 -0.8717 32 1 0.0906 3.1768 0.6816 33 1 0.5091 3.6846 -3.0351 34 1 0.8808 5.2379 -2.2492 35 1 1.7953 5.7835 -5.7744 36 1 3.5464 3.5166 -0.5676 37 1 4.0842 3.3321 1.1366 38 1 6.2083 2.4014 0.4858 39 1 5.9372 3.5453 -0.8715 40 1 6.2371 0.7922 -1.2078 41 1 5.3474 1.8411 -2.3450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309226435.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:58 Heat of formation + Delta-G solvation = -58.377986 kcal Electronic energy + Delta-G solvation = -19056.658733 eV Core-core repulsion = 16357.020447 eV Total energy + Delta-G solvation = -2699.638285 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.35548 -36.88530 -33.97112 -32.13121 -31.52810 -29.88298 -28.15345 -27.20035 -24.96951 -22.95405 -21.91903 -21.08236 -19.62986 -19.54634 -16.72836 -16.05366 -15.44766 -14.96585 -14.77448 -14.30339 -14.02589 -13.46169 -13.14582 -12.84953 -12.61030 -12.37498 -12.22542 -11.90836 -11.74496 -11.38377 -11.28682 -11.22659 -10.90364 -10.80755 -10.73964 -10.52965 -10.38241 -10.30843 -10.02808 -9.79945 -9.14746 -8.89989 -8.80014 -8.20973 -7.40603 -5.83831 -3.80710 3.42035 3.46512 3.49603 4.31252 4.59685 4.81784 4.98347 5.07540 5.28987 5.33496 5.37034 5.48016 5.53740 5.65855 5.73602 5.77219 5.87838 5.92536 5.94672 6.04160 6.10592 6.13517 6.15426 6.19952 6.26349 6.34912 6.46725 6.48923 6.56874 6.69217 6.91816 7.07400 7.56628 7.68888 7.78563 8.10921 8.14655 8.29876 8.64327 9.25033 9.80341 11.28434 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019044 B = 0.009814 C = 0.007455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.923286 B = 2852.517385 C = 3755.171358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C 0.084 3.916 4 H 0.053 0.947 5 N -0.647 5.647 6 C 0.078 3.922 7 H 0.075 0.925 8 C -0.183 4.183 9 C 0.032 3.968 10 C -0.485 4.485 11 H 0.063 0.937 12 C 0.050 3.950 13 N -0.905 5.905 14 Si 0.885 3.115 15 H -0.277 1.277 16 H -0.292 1.292 17 H -0.280 1.280 18 C 0.097 3.903 19 H 0.053 0.947 20 C -0.167 4.167 21 C -0.153 4.153 22 C 0.057 3.943 23 O -0.360 6.360 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.336 0.664 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.038 0.962 33 H 0.014 0.986 34 H 0.016 0.984 35 H 0.256 0.744 36 H 0.121 0.879 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.853 -7.612 11.698 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C -0.026 4.026 4 H 0.071 0.929 5 N -0.279 5.279 6 C -0.031 4.031 7 H 0.093 0.907 8 C -0.243 4.243 9 C -0.005 4.005 10 C -0.523 4.523 11 H 0.081 0.919 12 C -0.149 4.149 13 N -0.546 5.546 14 Si 0.714 3.286 15 H -0.203 1.203 16 H -0.218 1.218 17 H -0.206 1.206 18 C 0.039 3.961 19 H 0.071 0.929 20 C -0.204 4.204 21 C -0.190 4.190 22 C -0.020 4.020 23 O -0.279 6.279 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.156 0.844 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.033 0.967 34 H 0.035 0.965 35 H 0.066 0.934 36 H 0.139 0.861 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.378 -7.571 11.237 13.756 hybrid contribution 0.176 0.201 -0.005 0.267 sum 2.554 -7.371 11.232 13.675 Atomic orbital electron populations 1.21848 0.96323 1.01377 1.01649 1.21695 0.95156 0.96885 1.02659 1.21663 0.93544 0.94127 0.93291 0.92947 1.60488 1.45220 1.02080 1.20117 1.22086 0.92839 0.88752 0.99425 0.90748 1.22634 1.00465 1.01629 0.99538 1.19115 0.97614 0.94277 0.89545 1.21153 0.95048 1.33923 1.02204 0.91905 1.24995 0.96098 0.96197 0.97617 1.69957 1.29494 1.39320 1.15845 0.86765 0.85177 0.78061 0.78603 1.20287 1.21751 1.20611 1.22918 0.93132 0.91804 0.88250 0.92932 1.23712 0.95842 0.98408 1.02469 1.23029 0.97675 0.99305 0.99015 1.22971 0.86883 0.92809 0.99291 1.88389 1.36396 1.53955 1.49172 0.93263 0.92354 0.92917 0.90478 0.92260 0.84407 0.92685 0.93347 0.94308 0.96728 0.96546 0.93391 0.86117 0.91701 0.91927 0.90356 0.92941 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.82 37.16 0.36 -1.51 16 2 C -0.13 -1.71 5.24 -26.73 -0.14 -1.85 16 3 C 0.08 1.30 1.90 -67.71 -0.13 1.17 16 4 H 0.05 0.78 6.24 -51.93 -0.32 0.45 16 5 N -0.65 -11.96 5.34 -99.73 -0.53 -12.50 16 6 C 0.08 1.53 1.80 -67.71 -0.12 1.41 16 7 H 0.07 1.47 5.20 -51.93 -0.27 1.20 16 8 C -0.18 -3.05 9.07 37.16 0.34 -2.71 16 9 C 0.03 0.80 4.65 -27.89 -0.13 0.67 16 10 C -0.48 -13.33 8.79 -34.44 -0.30 -13.63 16 11 H 0.06 1.70 6.44 -52.48 -0.34 1.37 16 12 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 13 N -0.91 -27.40 13.29 55.43 0.74 -26.66 16 14 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 C 0.10 1.54 3.23 -25.70 -0.08 1.46 16 19 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 20 C -0.17 -2.68 6.01 -24.48 -0.15 -2.83 16 21 C -0.15 -2.29 7.02 -24.79 -0.17 -2.46 16 22 C 0.06 0.95 7.79 37.88 0.30 1.25 16 23 O -0.36 -6.52 10.50 -35.23 -0.37 -6.89 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.76 6.52 -51.93 -0.34 0.43 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.17 7.99 -51.93 -0.41 0.76 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.34 6.19 6.47 -39.30 -0.25 5.94 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 32 H 0.04 0.56 6.76 -51.93 -0.35 0.21 16 33 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.12 2.32 3.23 -51.93 -0.17 2.15 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 313.76 15.07 4.73 4.73 Total: -1.00 -29.67 313.76 -7.87 -37.55 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.09 Total: 4.41 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -0.33 Total: -17.71 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.20 Total: -39.16 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.37 Total: -6.89 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.67 -7.87 -37.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309226435.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.831 kcal (2) G-P(sol) polarization free energy of solvation -29.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds