Wall clock time and date at job start Sun Mar 29 2020 22:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47134 * 2 1 4 4 H 1.09000 * 109.47240 * 54.04099 * 3 2 1 5 5 N 1.46902 * 109.46946 * 294.03679 * 3 2 1 6 6 C 1.46903 * 110.99691 * 143.67430 * 5 3 2 7 7 H 1.08995 * 109.47546 * 48.87093 * 6 5 3 8 8 C 1.53005 * 109.46577 * 288.87602 * 6 5 3 9 9 C 1.52992 * 109.47272 * 168.87882 * 6 5 3 10 10 C 1.50704 * 109.47074 * 294.99862 * 9 6 5 11 11 H 1.08006 * 119.99675 * 359.97438 * 10 9 6 12 12 C 1.37878 * 120.00494 * 180.02562 * 10 9 6 13 13 N 1.31523 * 119.99471 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00393 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47023 * 59.99711 * 14 12 10 16 16 H 1.48504 * 109.47108 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46898 * 299.99702 * 14 12 10 18 18 C 1.53005 * 109.47094 * 174.03785 * 3 2 1 19 19 H 1.09000 * 110.34857 * 301.54169 * 18 3 2 20 20 C 1.54940 * 110.30868 * 179.39999 * 18 3 2 21 21 C 1.55307 * 100.93978 * 204.63961 * 20 18 3 22 22 C 1.54378 * 102.25546 * 34.13445 * 21 20 18 23 23 O 1.43239 * 107.58452 * 338.64416 * 22 21 20 24 24 H 1.09002 * 109.46921 * 295.92275 * 1 2 3 25 25 H 1.09003 * 109.47256 * 55.92027 * 1 2 3 26 26 H 1.09001 * 109.47101 * 175.92410 * 1 2 3 27 27 H 1.09007 * 109.47023 * 240.00474 * 2 1 3 28 28 H 1.09000 * 109.47417 * 120.00160 * 2 1 3 29 29 H 1.00893 * 111.00259 * 19.72007 * 5 3 2 30 30 H 1.09006 * 109.46634 * 185.30894 * 8 6 5 31 31 H 1.09003 * 109.47181 * 305.30675 * 8 6 5 32 32 H 1.08995 * 109.47504 * 65.31472 * 8 6 5 33 33 H 1.09004 * 109.47295 * 54.99342 * 9 6 5 34 34 H 1.08998 * 109.47524 * 174.99764 * 9 6 5 35 35 H 0.96999 * 119.99787 * 180.02562 * 13 12 10 36 36 H 1.09004 * 111.12349 * 322.55466 * 20 18 3 37 37 H 1.09002 * 111.12818 * 86.67800 * 20 18 3 38 38 H 1.08999 * 110.84863 * 275.93962 * 21 20 18 39 39 H 1.09006 * 110.84716 * 152.32417 * 21 20 18 40 40 H 1.08995 * 109.82994 * 219.13356 * 22 21 20 41 41 H 1.08998 * 109.83211 * 98.15550 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5922 1.9863 0.8318 5 7 1.6713 2.0922 -1.2649 6 6 1.3283 3.5045 -1.0509 7 1 2.1044 3.9801 -0.4512 8 6 -0.0116 3.5985 -0.3182 9 6 1.2215 4.2139 -2.4022 10 6 2.5724 4.2285 -3.0701 11 1 3.4223 3.7773 -2.5794 12 6 2.7238 4.8187 -4.3069 13 7 1.6890 5.3686 -4.9041 14 14 4.3984 4.8374 -5.1343 15 1 4.8629 3.4424 -5.3432 16 1 4.2947 5.5258 -6.4461 17 1 5.3687 5.5583 -4.2717 18 6 3.5627 1.4451 0.1498 19 1 3.8537 0.9416 1.0717 20 6 4.1018 2.8976 0.1371 21 6 5.5589 2.6669 -0.3484 22 6 5.3965 1.4772 -1.3187 23 8 4.1761 0.8074 -0.9817 24 1 -0.3633 0.4493 0.9243 25 1 -0.3634 0.5759 -0.8512 26 1 -0.3633 -1.0251 -0.0730 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 0.9147 1.6009 -1.7167 30 1 -0.3119 4.6436 -0.2428 31 1 -0.7681 3.0421 -0.8717 32 1 0.0906 3.1768 0.6816 33 1 0.5091 3.6846 -3.0351 34 1 0.8808 5.2379 -2.2492 35 1 1.7953 5.7835 -5.7744 36 1 3.5464 3.5166 -0.5676 37 1 4.0842 3.3321 1.1366 38 1 6.2083 2.4014 0.4858 39 1 5.9372 3.5453 -0.8715 40 1 6.2371 0.7922 -1.2078 41 1 5.3474 1.8411 -2.3450 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309226435.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:57 Heat of formation + Delta-G solvation = -77.239945 kcal Electronic energy + Delta-G solvation = -19057.476649 eV Core-core repulsion = 16357.020447 eV Total energy + Delta-G solvation = -2700.456201 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.63857 -38.28829 -35.56855 -34.02384 -32.80418 -31.09978 -29.73085 -28.91298 -26.19560 -24.93321 -23.10090 -22.33532 -21.14785 -20.85660 -18.41852 -17.78218 -16.75356 -16.53746 -16.28702 -15.84963 -15.35037 -14.77845 -14.56492 -14.39331 -13.96773 -13.65922 -13.58619 -13.32381 -13.22593 -13.18445 -12.80476 -12.58846 -12.48411 -12.40043 -12.09506 -12.02507 -11.86410 -11.62452 -11.55974 -11.17355 -11.03143 -10.67604 -10.43426 -10.19642 -8.81688 -8.05884 -6.08494 1.39838 1.43345 1.49644 2.48777 3.08200 3.27005 3.49624 3.76985 3.92981 4.12590 4.19561 4.28043 4.29669 4.40018 4.46285 4.52961 4.58190 4.67443 4.72250 4.84794 4.93254 4.94462 4.99235 5.04826 5.07164 5.15190 5.20916 5.26934 5.31767 5.34211 5.50404 5.52645 5.64852 5.77643 5.97285 6.32840 6.43944 6.68340 6.82283 7.06376 7.56521 9.06364 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019044 B = 0.009814 C = 0.007455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.923286 B = 2852.517385 C = 3755.171358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.085 3.915 4 H 0.067 0.933 5 N -0.664 5.664 6 C 0.091 3.909 7 H 0.077 0.923 8 C -0.174 4.174 9 C 0.037 3.963 10 C -0.485 4.485 11 H 0.064 0.936 12 C -0.008 4.008 13 N -0.943 5.943 14 Si 0.947 3.053 15 H -0.275 1.275 16 H -0.291 1.291 17 H -0.267 1.267 18 C 0.093 3.907 19 H 0.080 0.920 20 C -0.170 4.170 21 C -0.147 4.147 22 C 0.052 3.948 23 O -0.384 6.384 24 H 0.061 0.939 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.333 0.667 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.067 0.933 33 H -0.016 1.016 34 H -0.010 1.010 35 H 0.256 0.744 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.896 -8.690 13.912 16.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.025 4.025 4 H 0.085 0.915 5 N -0.296 5.296 6 C -0.018 4.018 7 H 0.094 0.906 8 C -0.233 4.233 9 C 0.000 4.000 10 C -0.524 4.524 11 H 0.083 0.917 12 C -0.203 4.203 13 N -0.586 5.586 14 Si 0.773 3.227 15 H -0.201 1.201 16 H -0.217 1.217 17 H -0.192 1.192 18 C 0.035 3.965 19 H 0.098 0.902 20 C -0.207 4.207 21 C -0.185 4.185 22 C -0.025 4.025 23 O -0.303 6.303 24 H 0.080 0.920 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.152 0.848 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.003 0.997 34 H 0.008 0.992 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.430 -8.655 13.469 16.374 hybrid contribution -0.158 0.509 -0.676 0.861 sum 3.272 -8.145 12.793 15.515 Atomic orbital electron populations 1.21811 0.95250 1.02153 1.01586 1.21631 0.96042 0.95443 1.02599 1.21764 0.93693 0.95086 0.91957 0.91532 1.60360 1.45265 1.01525 1.22454 1.21745 0.94704 0.89144 0.96237 0.90560 1.22500 0.98483 1.01731 1.00581 1.18995 0.95613 0.93154 0.92272 1.21499 0.96065 1.32661 1.02129 0.91745 1.25813 0.99588 0.96262 0.98619 1.70096 1.31595 1.40678 1.16225 0.85770 0.81170 0.78081 0.77632 1.20086 1.21663 1.19191 1.23132 0.93085 0.91693 0.88569 0.90199 1.23654 0.95986 0.98211 1.02860 1.23029 0.97674 0.98261 0.99499 1.23027 0.87306 0.94069 0.98055 1.88361 1.37127 1.54526 1.50316 0.92002 0.93871 0.91576 0.92580 0.90174 0.84762 0.93016 0.93374 0.91409 0.99731 0.99152 0.93570 0.89657 0.89225 0.88783 0.91203 0.90466 0.94373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.82 71.98 0.71 -2.58 16 2 C -0.12 -2.95 5.24 30.59 0.16 -2.79 16 3 C 0.09 2.43 1.90 44.92 0.09 2.52 16 4 H 0.07 1.74 6.24 -2.39 -0.01 1.72 16 5 N -0.66 -24.28 5.34 -469.45 -2.51 -26.79 16 6 C 0.09 3.56 1.80 44.91 0.08 3.64 16 7 H 0.08 2.98 5.20 -2.39 -0.01 2.97 16 8 C -0.17 -5.56 9.07 71.98 0.65 -4.91 16 9 C 0.04 1.92 4.65 29.85 0.14 2.06 16 10 C -0.49 -27.32 8.79 25.60 0.22 -27.10 16 11 H 0.06 3.56 6.44 -2.91 -0.02 3.54 16 12 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 13 N -0.94 -58.77 13.29 21.45 0.28 -58.48 16 14 Si 0.95 46.13 29.54 68.60 2.03 48.16 16 15 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 16 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 C 0.09 2.70 3.23 31.26 0.10 2.80 16 19 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 20 C -0.17 -5.07 6.01 32.05 0.19 -4.88 16 21 C -0.15 -4.08 7.02 31.85 0.22 -3.86 16 22 C 0.05 1.66 7.79 72.45 0.56 2.23 16 23 O -0.38 -13.36 10.50 -148.98 -1.56 -14.92 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.04 1.07 6.52 -2.39 -0.02 1.06 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.63 7.99 -2.38 -0.02 1.61 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.33 12.33 6.47 -89.70 -0.58 11.75 16 30 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 32 H 0.07 1.78 6.76 -2.39 -0.02 1.76 16 33 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 34 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.09 3.21 3.23 -2.38 -0.01 3.20 16 37 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -65.28 313.76 2.25 -63.04 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.41 Total: 21.86 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 3.59 Total: -32.86 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -2.22 Total: -85.27 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -1.56 Total: -14.92 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -65.28 2.25 -63.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309226435.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.204 kcal (2) G-P(sol) polarization free energy of solvation -65.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds