Wall clock time and date at job start Sun Mar 29 2020 22:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47122 * 2 1 4 4 C 1.53004 * 109.46798 * 179.97438 * 3 2 1 5 5 N 1.46903 * 110.45924 * 59.30104 * 4 3 2 6 6 C 1.46893 * 111.00119 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47186 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47355 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47168 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00563 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99902 * 180.02562 * 9 8 7 12 12 N 1.31516 * 119.99913 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99766 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.46985 * 179.97438 * 13 11 9 15 15 H 1.48494 * 109.47276 * 299.99832 * 13 11 9 16 16 H 1.48498 * 109.47150 * 60.00043 * 13 11 9 17 17 C 1.54514 * 110.50930 * 181.90080 * 4 3 2 18 18 C 1.54482 * 104.05985 * 118.78418 * 17 4 3 19 19 O 1.44419 * 104.80425 * 23.97839 * 18 17 4 20 20 C 1.44790 * 105.29635 * 319.45145 * 19 18 17 21 21 H 1.08999 * 109.47008 * 300.00545 * 1 2 3 22 22 H 1.09006 * 109.46642 * 60.00230 * 1 2 3 23 23 H 1.09000 * 109.47386 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47008 * 239.99455 * 2 1 3 25 25 H 1.09006 * 109.46642 * 119.99770 * 2 1 3 26 26 H 1.08999 * 109.47624 * 59.99832 * 3 2 1 27 27 H 1.09006 * 109.47174 * 299.99444 * 3 2 1 28 28 H 1.00908 * 110.99499 * 303.95000 * 5 4 3 29 29 H 1.09002 * 109.47091 * 59.99841 * 6 5 4 30 30 H 1.08992 * 109.47497 * 299.99732 * 6 5 4 31 31 H 1.09002 * 109.46807 * 60.00192 * 7 6 5 32 32 H 1.08998 * 109.47285 * 299.99794 * 7 6 5 33 33 H 1.09007 * 109.46922 * 59.99890 * 8 7 6 34 34 H 1.09003 * 109.46836 * 300.00646 * 8 7 6 35 35 H 0.97001 * 119.99646 * 179.97438 * 12 11 9 36 36 H 1.08997 * 110.51204 * 237.42362 * 17 4 3 37 37 H 1.08999 * 110.51295 * 0.13679 * 17 4 3 38 38 H 1.09002 * 110.37138 * 142.81239 * 18 17 4 39 39 H 1.09003 * 110.36844 * 265.14678 * 18 17 4 40 40 H 1.08993 * 110.42661 * 281.78054 * 20 19 18 41 41 H 1.08998 * 110.48458 * 159.32639 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0840 0.7395 -1.1825 6 6 5.5529 0.7328 -1.1942 7 6 6.0497 -0.0068 -2.4379 8 6 7.5796 -0.0132 -2.4504 9 6 8.0689 -0.7412 -3.6758 10 1 7.3597 -1.1573 -4.3760 11 6 9.4222 -0.8760 -3.9031 12 7 10.2859 -0.3688 -3.0508 13 14 10.0287 -1.7790 -5.4217 14 1 11.5137 -1.7851 -5.4339 15 1 9.5277 -3.1767 -5.3996 16 1 9.5270 -1.0925 -6.6392 17 6 4.1115 2.8887 0.0487 18 6 4.9182 2.9440 1.3649 19 8 5.2829 1.5724 1.6321 20 6 4.1107 0.7926 1.2936 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.6767 1.9564 0.8899 27 1 1.6768 1.9563 -0.8901 28 1 3.7174 -0.1993 -1.2330 29 1 5.9210 0.2285 -0.3007 30 1 5.9208 1.7587 -1.2100 31 1 5.6816 0.4972 -3.3316 32 1 5.6819 -1.0327 -2.4217 33 1 7.9482 -0.5169 -1.5567 34 1 7.9471 1.0129 -2.4668 35 1 11.2379 -0.4640 -3.2106 36 1 4.7605 3.0822 -0.8054 37 1 3.2891 3.6037 0.0744 38 1 5.8111 3.5561 1.2373 39 1 4.3003 3.3365 2.1725 40 1 3.3686 0.8565 2.0893 41 1 4.3837 -0.2466 1.1106 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309232181.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:09 Heat of formation + Delta-G solvation = -71.707967 kcal Electronic energy + Delta-G solvation = -17982.398902 eV Core-core repulsion = 15282.182585 eV Total energy + Delta-G solvation = -2700.216316 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.18696 -36.14289 -34.79264 -33.10657 -31.62823 -30.21118 -28.77603 -26.03477 -25.72679 -23.23081 -22.49819 -21.40026 -20.03330 -19.28599 -16.40494 -16.28105 -15.77462 -15.66386 -15.42409 -14.80734 -14.42363 -13.91579 -13.72437 -13.35692 -12.87940 -12.54591 -12.36063 -12.13001 -11.70952 -11.62190 -11.61446 -11.36214 -11.29332 -10.97909 -10.79634 -10.64472 -10.58472 -10.44263 -10.30071 -9.87365 -9.57375 -9.26135 -8.99634 -8.28253 -8.05235 -5.93435 -3.95569 3.37328 3.41266 3.44041 3.95170 4.34066 4.48035 4.52847 4.70472 4.82854 4.92793 5.01327 5.10872 5.22520 5.27782 5.41918 5.51349 5.56342 5.61217 5.68461 5.69761 5.71621 5.87988 5.89410 6.01015 6.08318 6.08817 6.13522 6.22486 6.48844 6.76404 6.81037 6.85626 7.21318 7.40601 7.67483 7.75818 7.91957 8.07712 8.50557 9.11630 9.67892 11.17931 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029768 B = 0.004756 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.391125 B = 5886.139146 C = 6526.213739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.100 4.100 4 C 0.086 3.914 5 N -0.674 5.674 6 C 0.056 3.944 7 C -0.107 4.107 8 C 0.024 3.976 9 C -0.519 4.519 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.892 3.108 14 H -0.288 1.288 15 H -0.277 1.277 16 H -0.277 1.277 17 C -0.148 4.148 18 C 0.043 3.957 19 O -0.369 6.369 20 C 0.018 3.982 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.338 0.662 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.014 0.986 34 H 0.015 0.985 35 H 0.260 0.740 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.800 4.750 9.082 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.138 4.138 4 C -0.007 4.007 5 N -0.305 5.305 6 C -0.072 4.072 7 C -0.145 4.145 8 C -0.014 4.014 9 C -0.557 4.557 10 H 0.072 0.928 11 C -0.145 4.145 12 N -0.535 5.535 13 Si 0.720 3.280 14 H -0.213 1.213 15 H -0.203 1.203 16 H -0.203 1.203 17 C -0.186 4.186 18 C -0.034 4.034 19 O -0.287 6.287 20 C -0.061 4.061 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.157 0.843 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.032 0.968 34 H 0.033 0.967 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.447 5.239 8.775 20.220 hybrid contribution 0.464 -1.071 -0.158 1.178 sum -16.983 4.168 8.617 19.495 Atomic orbital electron populations 1.21746 0.95796 1.01539 1.01643 1.21599 0.95972 0.97007 1.02262 1.21617 0.92624 0.97201 1.02342 1.22311 0.94782 0.94298 0.89293 1.60744 1.09747 1.22094 1.37957 1.22183 0.85051 1.01210 0.98729 1.21629 0.99520 0.97917 0.95421 1.19038 0.88389 0.97093 0.96872 1.21230 0.91540 1.35318 1.07644 0.92800 1.25030 0.97047 0.95846 0.96571 1.69967 1.01762 1.45700 1.36121 0.86668 0.77503 0.80314 0.83557 1.21328 1.20301 1.20263 1.23095 1.00486 0.95752 0.99233 1.23416 0.99545 0.84861 0.95554 1.89243 1.34764 1.17211 1.87520 1.24295 0.88201 0.96819 0.96743 0.93025 0.92637 0.92835 0.91189 0.92256 0.91753 0.90736 0.84253 0.94681 0.91359 0.92807 0.93889 0.96778 0.96665 0.93025 0.89100 0.90474 0.89063 0.92739 0.92412 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.80 16 2 C -0.13 -1.18 5.41 -26.73 -0.14 -1.32 16 3 C -0.10 -0.96 4.18 -26.73 -0.11 -1.08 16 4 C 0.09 1.03 0.82 -130.03 -0.11 0.93 16 5 N -0.67 -9.81 6.10 -98.38 -0.60 -10.41 16 6 C 0.06 1.02 4.62 -3.83 -0.02 1.00 16 7 C -0.11 -2.30 5.41 -26.73 -0.14 -2.44 16 8 C 0.02 0.64 4.97 -27.89 -0.14 0.50 16 9 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 10 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.90 -27.67 13.29 55.43 0.74 -26.93 16 13 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 C -0.15 -1.76 5.89 -25.16 -0.15 -1.91 16 18 C 0.04 0.52 7.63 37.94 0.29 0.81 16 19 O -0.37 -5.64 10.59 -35.23 -0.37 -6.02 16 20 C 0.02 0.23 4.99 37.93 0.19 0.42 16 21 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.68 6.64 -51.93 -0.34 0.34 16 25 H 0.06 0.52 7.33 -51.93 -0.38 0.14 16 26 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.34 4.63 6.86 -39.29 -0.27 4.36 16 29 H 0.03 0.68 6.34 -51.93 -0.33 0.35 16 30 H 0.07 1.29 6.21 -51.93 -0.32 0.97 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 34 H 0.01 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.09 1.26 6.28 -51.93 -0.33 0.93 16 37 H 0.08 0.75 7.73 -51.93 -0.40 0.35 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.63 7.80 -51.93 -0.40 0.22 16 41 H 0.09 1.16 7.59 -51.93 -0.39 0.77 16 LS Contribution 317.61 15.07 4.79 4.79 Total: -1.00 -31.25 317.61 -8.21 -39.47 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.36 Total: -0.22 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -0.38 Total: -17.81 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.14 Total: -37.34 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.37 Total: -6.02 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.25 -8.21 -39.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309232181.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.242 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds