Wall clock time and date at job start Sun Mar 29 2020 22:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47213 * 2 1 4 4 C 1.53004 * 109.47269 * 180.02562 * 3 2 1 5 5 N 1.46896 * 110.45398 * 305.69935 * 4 3 2 6 6 C 1.46907 * 111.00256 * 301.97944 * 5 4 3 7 7 C 1.52999 * 109.47005 * 185.31935 * 6 5 4 8 8 C 1.53002 * 109.46850 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47192 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99758 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00135 * 179.72710 * 9 8 7 12 12 N 1.31516 * 119.99956 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00144 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46928 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47214 * 119.99696 * 13 11 9 16 16 H 1.48501 * 109.47203 * 239.99629 * 13 11 9 17 17 C 1.54513 * 110.50871 * 183.09480 * 4 3 2 18 18 C 1.54470 * 104.06083 * 241.21546 * 17 4 3 19 19 O 1.44429 * 104.80701 * 23.98041 * 18 17 4 20 20 C 1.44429 * 105.27344 * 319.48660 * 19 18 17 21 21 H 1.08995 * 109.47229 * 60.00438 * 1 2 3 22 22 H 1.09009 * 109.47104 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47329 * 299.99821 * 1 2 3 24 24 H 1.09003 * 109.47349 * 239.99472 * 2 1 3 25 25 H 1.09004 * 109.47207 * 120.00194 * 2 1 3 26 26 H 1.08997 * 109.46826 * 59.99871 * 3 2 1 27 27 H 1.09005 * 109.46755 * 299.99904 * 3 2 1 28 28 H 1.00895 * 111.00259 * 65.93348 * 5 4 3 29 29 H 1.08999 * 109.46960 * 65.31827 * 6 5 4 30 30 H 1.09004 * 109.46580 * 305.32013 * 6 5 4 31 31 H 1.08997 * 109.46830 * 60.00164 * 7 6 5 32 32 H 1.08996 * 109.47232 * 300.00075 * 7 6 5 33 33 H 1.08999 * 109.47102 * 59.99900 * 8 7 6 34 34 H 1.09004 * 109.46593 * 299.99992 * 8 7 6 35 35 H 0.96998 * 120.00300 * 180.02562 * 12 11 9 36 36 H 1.08994 * 110.51112 * 359.86474 * 17 4 3 37 37 H 1.09002 * 110.50495 * 122.57432 * 17 4 3 38 38 H 1.09000 * 110.37566 * 142.80978 * 18 17 4 39 39 H 1.09007 * 110.37550 * 265.03876 * 18 17 4 40 40 H 1.08993 * 110.36971 * 281.67890 * 20 19 18 41 41 H 1.08996 * 110.36755 * 159.33590 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0838 0.6392 1.1167 6 6 3.5878 1.1477 2.4026 7 6 4.2462 0.3727 3.5457 8 6 3.7291 0.9019 4.8849 9 6 4.3781 0.1390 6.0109 10 1 5.0880 -0.6452 5.7931 11 6 4.0694 0.4456 7.3192 12 7 3.2089 1.4042 7.5845 13 14 4.8732 -0.5005 8.7149 14 1 5.7956 -1.5206 8.1546 15 1 5.6369 0.4391 9.5746 16 1 3.8258 -1.1727 9.5251 17 6 4.1114 2.8876 0.0775 18 6 4.9181 3.0573 -1.2289 19 8 4.3510 2.0916 -2.1410 20 6 4.1137 0.9101 -1.3450 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9563 -0.8901 28 1 3.8503 -0.3353 0.9990 29 1 2.5066 1.0188 2.4516 30 1 3.8320 2.2062 2.4932 31 1 5.3274 0.5017 3.4967 32 1 4.0021 -0.6857 3.4550 33 1 2.6479 0.7726 4.9337 34 1 3.9729 1.9605 4.9758 35 1 2.9920 1.6202 8.5050 36 1 3.2890 3.6020 0.1141 37 1 4.7603 3.0058 0.9452 38 1 4.7967 4.0668 -1.6215 39 1 5.9725 2.8431 -1.0543 40 1 5.0444 0.3648 -1.1887 41 1 3.3743 0.2704 -1.8267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309232182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:11 Heat of formation + Delta-G solvation = -73.290630 kcal Electronic energy + Delta-G solvation = -17946.103897 eV Core-core repulsion = 15245.818951 eV Total energy + Delta-G solvation = -2700.284946 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.11382 -36.74320 -34.41834 -33.09324 -31.66142 -30.12439 -28.79833 -26.35850 -25.63840 -23.43176 -22.45451 -21.28709 -20.06303 -19.17169 -16.69895 -16.24418 -16.15327 -15.62014 -15.18486 -14.51750 -14.45440 -14.23713 -13.71724 -13.20736 -13.04470 -12.76427 -12.28398 -12.15430 -11.97802 -11.62845 -11.54285 -11.36923 -11.15206 -10.87100 -10.77822 -10.67238 -10.61377 -10.43410 -10.40997 -9.76762 -9.68542 -9.32334 -9.03928 -8.34366 -8.19495 -5.99362 -4.01305 3.31405 3.38866 3.43384 3.88918 4.27809 4.47587 4.52367 4.70600 4.83179 4.95801 5.05571 5.14468 5.31795 5.34294 5.36683 5.56742 5.61259 5.67757 5.71434 5.76458 5.79634 5.82377 5.90357 5.95095 6.01361 6.09649 6.16672 6.21775 6.37059 6.62344 6.71849 6.83332 7.14350 7.34739 7.59432 7.69282 7.83994 8.01239 8.44709 9.06234 9.62858 11.12148 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029364 B = 0.004664 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.333176 B = 6001.484692 C = 6501.665744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.141 4.141 4 C 0.083 3.917 5 N -0.674 5.674 6 C 0.057 3.943 7 C -0.105 4.105 8 C 0.022 3.978 9 C -0.517 4.517 10 H 0.055 0.945 11 C 0.056 3.944 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C -0.146 4.146 18 C 0.048 3.952 19 O -0.378 6.378 20 C 0.054 3.946 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.339 0.661 29 H 0.029 0.971 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.013 0.987 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.638 0.523 -17.626 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.180 4.180 4 C -0.009 4.009 5 N -0.306 5.306 6 C -0.072 4.072 7 C -0.143 4.143 8 C -0.015 4.015 9 C -0.556 4.556 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.184 4.184 18 C -0.028 4.028 19 O -0.297 6.297 20 C -0.023 4.023 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.158 0.842 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.087 0.913 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.158 0.987 -17.677 17.743 hybrid contribution -0.567 -0.743 1.176 1.502 sum -1.726 0.244 -16.501 16.593 Atomic orbital electron populations 1.21730 0.95616 1.01595 1.01782 1.21601 0.96330 0.96803 1.01973 1.22256 0.95674 0.97364 1.02731 1.22274 0.92651 0.94018 0.91937 1.60802 1.62226 1.06193 1.01365 1.22175 0.96974 1.00041 0.87977 1.21605 0.99891 0.98173 0.94677 1.19064 0.96182 0.96386 0.89909 1.21296 1.24777 1.18493 0.91017 0.92639 1.25026 0.95269 0.95260 0.98959 1.69976 1.34057 1.30357 1.19257 0.86550 0.79293 0.79943 0.82315 1.19719 1.21020 1.21056 1.23039 1.00570 0.95531 0.99229 1.23371 0.97156 0.93300 0.89010 1.89086 1.83237 1.24310 1.33020 1.23505 1.00510 0.88492 0.89792 0.92936 0.92766 0.92571 0.92020 0.91673 0.91168 0.91415 0.84248 0.95262 0.91415 0.92664 0.93728 0.96877 0.96669 0.93109 0.90850 0.89096 0.89484 0.92084 0.91263 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.15 0.37 -1.15 16 2 C -0.13 -1.39 5.23 -26.73 -0.14 -1.53 16 3 C -0.14 -1.63 3.50 -26.73 -0.09 -1.72 16 4 C 0.08 1.01 0.64 -130.03 -0.08 0.92 16 5 N -0.67 -9.35 5.80 -98.37 -0.57 -9.92 16 6 C 0.06 0.94 4.69 -3.82 -0.02 0.93 16 7 C -0.11 -2.16 5.46 -26.73 -0.15 -2.31 16 8 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 9 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 10 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 13 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 C -0.15 -1.74 5.82 -25.17 -0.15 -1.89 16 18 C 0.05 0.54 7.63 37.93 0.29 0.83 16 19 O -0.38 -4.84 11.65 -35.23 -0.41 -5.25 16 20 C 0.05 0.62 6.73 37.93 0.26 0.88 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.59 6.61 -51.93 -0.34 0.25 16 25 H 0.06 0.77 6.27 -51.93 -0.33 0.45 16 26 H 0.07 0.90 6.92 -51.93 -0.36 0.54 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.34 4.42 7.24 -39.29 -0.28 4.14 16 29 H 0.03 0.49 6.33 -51.93 -0.33 0.17 16 30 H 0.07 1.16 6.54 -51.93 -0.34 0.82 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.07 0.83 7.73 -51.93 -0.40 0.43 16 37 H 0.09 1.19 6.84 -51.93 -0.36 0.84 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 41 H 0.09 0.91 6.36 -51.93 -0.33 0.58 16 LS Contribution 317.10 15.07 4.78 4.78 Total: -1.00 -30.02 317.10 -8.00 -38.03 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -7.25 Total: 0.15 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -0.26 Total: -18.17 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.17 Total: -36.29 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.41 Total: -5.25 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.02 -8.00 -38.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309232182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.263 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds