Wall clock time and date at job start Sun Mar 29 2020 22:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47213 * 2 1 4 4 C 1.53004 * 109.47269 * 180.02562 * 3 2 1 5 5 N 1.46896 * 110.45398 * 305.69935 * 4 3 2 6 6 C 1.46907 * 111.00256 * 301.97944 * 5 4 3 7 7 C 1.52999 * 109.47005 * 185.31935 * 6 5 4 8 8 C 1.53002 * 109.46850 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47192 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99758 * 359.97438 * 9 8 7 11 11 C 1.37873 * 120.00135 * 179.72710 * 9 8 7 12 12 N 1.31516 * 119.99956 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00144 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46928 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47214 * 119.99696 * 13 11 9 16 16 H 1.48501 * 109.47203 * 239.99629 * 13 11 9 17 17 C 1.54513 * 110.50871 * 183.09480 * 4 3 2 18 18 C 1.54470 * 104.06083 * 241.21546 * 17 4 3 19 19 O 1.44429 * 104.80701 * 23.98041 * 18 17 4 20 20 C 1.44429 * 105.27344 * 319.48660 * 19 18 17 21 21 H 1.08995 * 109.47229 * 60.00438 * 1 2 3 22 22 H 1.09009 * 109.47104 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47329 * 299.99821 * 1 2 3 24 24 H 1.09003 * 109.47349 * 239.99472 * 2 1 3 25 25 H 1.09004 * 109.47207 * 120.00194 * 2 1 3 26 26 H 1.08997 * 109.46826 * 59.99871 * 3 2 1 27 27 H 1.09005 * 109.46755 * 299.99904 * 3 2 1 28 28 H 1.00895 * 111.00259 * 65.93348 * 5 4 3 29 29 H 1.08999 * 109.46960 * 65.31827 * 6 5 4 30 30 H 1.09004 * 109.46580 * 305.32013 * 6 5 4 31 31 H 1.08997 * 109.46830 * 60.00164 * 7 6 5 32 32 H 1.08996 * 109.47232 * 300.00075 * 7 6 5 33 33 H 1.08999 * 109.47102 * 59.99900 * 8 7 6 34 34 H 1.09004 * 109.46593 * 299.99992 * 8 7 6 35 35 H 0.96998 * 120.00300 * 180.02562 * 12 11 9 36 36 H 1.08994 * 110.51112 * 359.86474 * 17 4 3 37 37 H 1.09002 * 110.50495 * 122.57432 * 17 4 3 38 38 H 1.09000 * 110.37566 * 142.80978 * 18 17 4 39 39 H 1.09007 * 110.37550 * 265.03876 * 18 17 4 40 40 H 1.08993 * 110.36971 * 281.67890 * 20 19 18 41 41 H 1.08996 * 110.36755 * 159.33590 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0838 0.6392 1.1167 6 6 3.5878 1.1477 2.4026 7 6 4.2462 0.3727 3.5457 8 6 3.7291 0.9019 4.8849 9 6 4.3781 0.1390 6.0109 10 1 5.0880 -0.6452 5.7931 11 6 4.0694 0.4456 7.3192 12 7 3.2089 1.4042 7.5845 13 14 4.8732 -0.5005 8.7149 14 1 5.7956 -1.5206 8.1546 15 1 5.6369 0.4391 9.5746 16 1 3.8258 -1.1727 9.5251 17 6 4.1114 2.8876 0.0775 18 6 4.9181 3.0573 -1.2289 19 8 4.3510 2.0916 -2.1410 20 6 4.1137 0.9101 -1.3450 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.6766 1.9563 -0.8901 28 1 3.8503 -0.3353 0.9990 29 1 2.5066 1.0188 2.4516 30 1 3.8320 2.2062 2.4932 31 1 5.3274 0.5017 3.4967 32 1 4.0021 -0.6857 3.4550 33 1 2.6479 0.7726 4.9337 34 1 3.9729 1.9605 4.9758 35 1 2.9920 1.6202 8.5050 36 1 3.2890 3.6020 0.1141 37 1 4.7603 3.0058 0.9452 38 1 4.7967 4.0668 -1.6215 39 1 5.9725 2.8431 -1.0543 40 1 5.0444 0.3648 -1.1887 41 1 3.3743 0.2704 -1.8267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309232182.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:11 Heat of formation + Delta-G solvation = -92.344483 kcal Electronic energy + Delta-G solvation = -17946.930134 eV Core-core repulsion = 15245.818951 eV Total energy + Delta-G solvation = -2701.111183 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.09780 -37.86421 -36.01446 -34.61476 -33.18220 -31.32377 -30.01740 -27.67103 -27.03008 -24.57294 -24.00208 -22.22675 -21.76443 -20.19984 -18.46748 -17.68927 -17.09820 -16.77669 -16.48024 -16.13323 -15.52853 -15.40105 -15.14605 -14.38683 -14.24598 -13.99787 -13.74950 -13.43580 -13.39716 -12.92476 -12.75160 -12.63809 -12.57898 -12.37034 -12.22877 -12.09299 -11.69426 -11.57683 -11.51775 -11.43749 -11.30020 -11.05655 -10.68106 -10.56082 -9.36749 -8.20558 -6.31414 1.39819 1.40059 1.53652 2.40735 2.93335 3.12820 3.21767 3.57472 3.76152 3.91059 4.07662 4.16644 4.23011 4.29572 4.37760 4.44788 4.48669 4.69220 4.71754 4.74947 4.84394 4.85881 4.88189 4.93982 4.97399 5.03055 5.05709 5.13059 5.22986 5.25719 5.30407 5.38873 5.52738 5.72838 5.75608 5.86285 6.11862 6.27721 6.48317 6.85908 7.38081 8.91598 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.029364 B = 0.004664 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.333176 B = 6001.484692 C = 6501.665744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C -0.135 4.135 4 C 0.083 3.917 5 N -0.671 5.671 6 C 0.074 3.926 7 C -0.091 4.091 8 C 0.026 3.974 9 C -0.541 4.541 10 H 0.059 0.941 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.965 3.035 14 H -0.262 1.262 15 H -0.278 1.278 16 H -0.278 1.278 17 C -0.149 4.149 18 C 0.049 3.951 19 O -0.391 6.391 20 C 0.058 3.942 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.042 0.958 24 H 0.078 0.922 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.346 0.654 29 H 0.026 0.974 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.049 0.951 33 H -0.010 1.010 34 H -0.010 1.010 35 H 0.263 0.737 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.154 -0.372 -18.550 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.175 4.175 4 C -0.009 4.009 5 N -0.304 5.304 6 C -0.055 4.055 7 C -0.129 4.129 8 C -0.012 4.012 9 C -0.579 4.579 10 H 0.077 0.923 11 C -0.198 4.198 12 N -0.575 5.575 13 Si 0.789 3.211 14 H -0.186 1.186 15 H -0.204 1.204 16 H -0.203 1.203 17 C -0.187 4.187 18 C -0.027 4.027 19 O -0.309 6.309 20 C -0.019 4.019 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.094 0.906 28 H 0.165 0.835 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.008 0.992 34 H 0.008 0.992 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.670 0.086 -18.622 18.635 hybrid contribution -0.732 -0.431 1.439 1.671 sum -1.403 -0.345 -17.184 17.244 Atomic orbital electron populations 1.21727 0.95167 1.02095 1.01687 1.21590 0.96746 0.96107 1.02075 1.22189 0.95084 0.97926 1.02253 1.22336 0.93096 0.93873 0.91602 1.60691 1.62231 1.06849 1.00597 1.21810 0.96312 0.99044 0.88316 1.21352 0.99561 0.98620 0.93330 1.18962 0.94698 0.94912 0.92583 1.21728 1.25093 1.18896 0.92212 0.92295 1.25977 0.95751 0.96175 1.01926 1.70102 1.35376 1.31870 1.20133 0.85404 0.78449 0.78639 0.78599 1.18596 1.20354 1.20321 1.23056 1.00665 0.95646 0.99297 1.23451 0.96986 0.94005 0.88269 1.89078 1.83387 1.24833 1.33613 1.23520 1.00934 0.88359 0.89095 0.91864 0.92000 0.93842 0.90388 0.93006 0.92850 0.90626 0.83451 0.95582 0.92056 0.93038 0.93224 0.99198 0.99173 0.92791 0.90402 0.90515 0.87687 0.91826 0.91250 0.87716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.91 71.98 0.71 -2.10 16 2 C -0.13 -2.54 5.23 30.59 0.16 -2.38 16 3 C -0.14 -2.96 3.50 30.60 0.11 -2.85 16 4 C 0.08 1.89 0.64 4.55 0.00 1.89 16 5 N -0.67 -17.97 5.80 -465.14 -2.70 -20.67 16 6 C 0.07 2.48 4.69 86.30 0.40 2.89 16 7 C -0.09 -3.74 5.46 30.59 0.17 -3.57 16 8 C 0.03 1.39 4.97 29.85 0.15 1.54 16 9 C -0.54 -31.22 9.11 25.60 0.23 -30.99 16 10 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 11 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 12 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 13 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 14 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 C -0.15 -3.41 5.82 31.61 0.18 -3.23 16 18 C 0.05 1.01 7.63 72.48 0.55 1.56 16 19 O -0.39 -9.15 11.65 -148.98 -1.74 -10.88 16 20 C 0.06 1.21 6.73 72.48 0.49 1.70 16 21 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 23 H 0.04 0.91 8.14 -2.39 -0.02 0.90 16 24 H 0.08 1.30 6.61 -2.39 -0.02 1.28 16 25 H 0.05 1.17 6.27 -2.39 -0.01 1.16 16 26 H 0.05 1.35 6.92 -2.39 -0.02 1.33 16 27 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.35 8.54 7.24 -89.70 -0.65 7.89 16 29 H 0.03 0.89 6.33 -2.39 -0.02 0.88 16 30 H 0.06 2.14 6.54 -2.38 -0.02 2.12 16 31 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 33 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 34 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 35 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.08 1.70 7.73 -2.39 -0.02 1.68 16 37 H 0.08 1.99 6.84 -2.39 -0.02 1.97 16 38 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.07 1.46 8.06 -2.39 -0.02 1.44 16 41 H 0.10 1.85 6.36 -2.39 -0.02 1.83 16 Total: -1.00 -63.82 317.10 1.84 -61.98 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.34 Total: 15.13 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 3.62 Total: -35.12 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -2.41 Total: -77.73 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -1.74 Total: -10.88 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -63.82 1.84 -61.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309232182.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.361 kcal (2) G-P(sol) polarization free energy of solvation -63.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds