Wall clock time and date at job start Sun Mar 29 2020 23:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 H 1.09008 * 109.46807 * 181.44047 * 3 2 1 5 5 C 1.50700 * 109.47260 * 61.43902 * 3 2 1 6 6 H 1.07993 * 120.00196 * 245.38602 * 5 3 2 7 7 C 1.37887 * 119.99796 * 65.39420 * 5 3 2 8 8 N 1.31506 * 119.99941 * 9.22869 * 7 5 3 9 9 Si 1.86795 * 119.99780 * 189.23126 * 7 5 3 10 10 H 1.48502 * 109.47141 * 269.99741 * 9 7 5 11 11 H 1.48496 * 109.47249 * 29.99645 * 9 7 5 12 12 H 1.48502 * 109.47266 * 149.99878 * 9 7 5 13 13 N 1.46902 * 109.47273 * 301.43811 * 3 2 1 14 14 C 1.46907 * 110.99962 * 274.18949 * 13 3 2 15 15 C 1.52997 * 109.46937 * 184.26395 * 14 13 3 16 16 C 1.53004 * 109.47006 * 184.42426 * 15 14 13 17 17 O 1.42898 * 112.84518 * 290.18905 * 16 15 14 18 18 C 1.42900 * 114.00252 * 304.42854 * 17 16 15 19 19 C 1.53782 * 113.61458 * 158.88114 * 16 15 14 20 20 C 1.53775 * 87.07832 * 220.01978 * 19 16 15 21 21 C 1.53777 * 87.08498 * 25.43497 * 20 19 16 22 22 H 1.09008 * 109.47022 * 304.49422 * 1 2 3 23 23 H 1.09002 * 109.46588 * 64.48911 * 1 2 3 24 24 H 1.08990 * 109.47375 * 184.49020 * 1 2 3 25 25 H 1.09001 * 109.46894 * 239.99924 * 2 1 3 26 26 H 1.09002 * 109.46898 * 119.99523 * 2 1 3 27 27 H 0.97009 * 120.00373 * 357.16141 * 8 7 5 28 28 H 1.00894 * 110.99970 * 150.23621 * 13 3 2 29 29 H 1.08999 * 109.47136 * 304.26657 * 14 13 3 30 30 H 1.08997 * 109.46837 * 64.26249 * 14 13 3 31 31 H 1.09002 * 109.46696 * 304.42057 * 15 14 13 32 32 H 1.08996 * 109.46833 * 64.42255 * 15 14 13 33 33 H 1.09002 * 109.47184 * 186.41480 * 18 17 16 34 34 H 1.09001 * 109.47128 * 306.41239 * 18 17 16 35 35 H 1.08998 * 109.46750 * 66.40860 * 18 17 16 36 36 H 1.09005 * 113.61124 * 334.56609 * 19 16 15 37 37 H 1.08991 * 113.61137 * 105.46806 * 19 16 15 38 38 H 1.09004 * 113.61579 * 270.87960 * 20 19 16 39 39 H 1.09005 * 113.69085 * 139.99149 * 20 19 16 40 40 H 1.08999 * 113.61452 * 220.02128 * 21 20 19 41 41 H 1.09000 * 113.69700 * 89.12619 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4426 -0.0258 5 6 1.5670 2.1426 1.2479 6 1 0.8744 2.9679 1.1745 7 6 2.0187 1.7294 2.4834 8 7 2.9943 0.8515 2.5670 9 14 1.2449 2.4167 4.0384 10 1 1.9762 3.6398 4.4564 11 1 -0.1768 2.7555 3.7759 12 1 1.3204 1.4013 5.1194 13 7 1.5221 2.1450 -1.1817 14 6 2.3890 1.9245 -2.3471 15 6 1.8783 2.7543 -3.5267 16 6 2.7135 2.4413 -4.7699 17 8 4.0494 2.9406 -4.6810 18 6 4.1295 4.3435 -4.4211 19 6 2.0085 2.7938 -6.0904 20 6 2.5907 1.4887 -6.6583 21 6 2.6336 0.9703 -5.2112 22 1 -0.3633 0.5820 0.8470 23 1 -0.3632 0.4426 -0.9275 24 1 -0.3633 -1.0244 0.0804 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.3683 0.4636 1.7603 28 1 1.4095 3.1303 -0.9961 29 1 3.4078 2.2264 -2.1044 30 1 2.3770 0.8678 -2.6140 31 1 0.8341 2.5081 -3.7190 32 1 1.9639 3.8146 -3.2890 33 1 5.1692 4.6654 -4.4811 34 1 3.5386 4.8843 -5.1604 35 1 3.7418 4.5509 -3.4238 36 1 0.9209 2.7919 -6.0187 37 1 2.4007 3.6913 -6.5685 38 1 3.5761 1.6096 -7.1083 39 1 1.8976 0.9417 -7.2976 40 1 3.5305 0.3957 -4.9797 41 1 1.7176 0.4695 -4.8979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310553977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:59 Heat of formation + Delta-G solvation = -40.911182 kcal Electronic energy + Delta-G solvation = -18244.297343 eV Core-core repulsion = 15545.416476 eV Total energy + Delta-G solvation = -2698.880868 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.02457 -36.52891 -35.61302 -33.29918 -31.10628 -29.28652 -27.05338 -25.92569 -25.38728 -23.56543 -23.11669 -21.22764 -19.42689 -19.23093 -16.97669 -16.18957 -15.71973 -15.18349 -14.79302 -14.42935 -14.06913 -13.76667 -13.67562 -13.43688 -12.86204 -12.44012 -12.34473 -11.97219 -11.73873 -11.42911 -11.19434 -11.07932 -10.93605 -10.85972 -10.76759 -10.72319 -10.11101 -10.04800 -9.98186 -9.88840 -9.70571 -9.26529 -8.54632 -8.21070 -7.32375 -6.34431 -4.04202 3.42923 3.47915 3.63086 3.67319 4.42979 4.53476 4.58453 4.78035 4.83308 5.22263 5.31367 5.39089 5.40685 5.48079 5.59400 5.62817 5.67343 5.69748 5.81951 5.82303 6.00924 6.03469 6.19538 6.25882 6.32853 6.43747 6.48058 6.53329 6.64824 7.00697 7.10941 7.27849 7.29495 7.52589 7.56458 7.92476 8.14260 8.55807 8.62472 8.89861 9.66957 11.03098 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035073 B = 0.005288 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.153961 B = 5294.022538 C = 5643.764705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C 0.204 3.796 4 H -0.008 1.008 5 C -0.595 4.595 6 H 0.053 0.947 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 1.068 2.932 10 H -0.290 1.290 11 H -0.288 1.288 12 H -0.284 1.284 13 N -0.681 5.681 14 C 0.066 3.934 15 C -0.132 4.132 16 C 0.093 3.907 17 O -0.363 6.363 18 C 0.029 3.971 19 C -0.163 4.163 20 C -0.135 4.135 21 C -0.123 4.123 22 H 0.059 0.941 23 H 0.046 0.954 24 H 0.017 0.983 25 H 0.018 0.982 26 H 0.057 0.943 27 H 0.271 0.729 28 H 0.330 0.670 29 H 0.020 0.980 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.334 3.650 -15.519 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.144 4.144 3 C 0.095 3.905 4 H 0.009 0.991 5 C -0.634 4.634 6 H 0.071 0.929 7 C -0.182 4.182 8 N -0.547 5.547 9 Si 0.897 3.103 10 H -0.217 1.217 11 H -0.214 1.214 12 H -0.210 1.210 13 N -0.311 5.311 14 C -0.064 4.064 15 C -0.170 4.170 16 C 0.053 3.947 17 O -0.281 6.281 18 C -0.067 4.067 19 C -0.201 4.201 20 C -0.173 4.173 21 C -0.160 4.160 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.147 0.853 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.518 2.976 -14.039 14.431 hybrid contribution 0.552 0.842 -1.392 1.717 sum -0.966 3.818 -15.431 15.925 Atomic orbital electron populations 1.21423 0.96555 0.97767 1.01903 1.21483 0.96211 0.98389 0.98298 1.19235 0.92246 0.91312 0.87673 0.99083 1.21976 1.30737 1.18825 0.91848 0.92910 1.25711 0.94850 0.96116 1.01542 1.70761 1.22234 1.28665 1.32993 0.83562 0.75545 0.75863 0.75346 1.21679 1.21387 1.21010 1.60640 1.49616 1.15614 1.05267 1.21813 0.94361 0.99253 0.90975 1.22043 0.99936 1.00397 0.94590 1.22558 0.83064 0.95845 0.93231 1.87886 1.24965 1.23037 1.92253 1.22714 1.02117 0.82010 0.99868 1.23532 1.00685 0.98406 0.97429 1.22763 1.01198 0.96814 0.96511 1.22982 1.03128 0.94534 0.95387 0.92178 0.93450 0.96413 0.96318 0.92431 0.91782 0.85257 0.96227 0.91907 0.90220 0.92099 0.89884 0.94171 0.93530 0.89308 0.91428 0.90093 0.91518 0.90638 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.52 37.16 0.35 -2.29 16 2 C -0.11 -2.53 5.49 -26.73 -0.15 -2.68 16 3 C 0.20 5.13 1.93 -68.86 -0.13 4.99 16 4 H -0.01 -0.23 7.08 -51.92 -0.37 -0.60 16 5 C -0.60 -16.33 7.22 -34.44 -0.25 -16.58 16 6 H 0.05 1.45 7.68 -52.49 -0.40 1.05 16 7 C 0.02 0.64 5.20 -17.82 -0.09 0.54 16 8 N -0.91 -27.24 13.05 55.43 0.72 -26.52 16 9 Si 1.07 25.11 29.91 -169.99 -5.08 20.03 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.68 -14.50 5.59 -107.94 -0.60 -15.10 16 14 C 0.07 1.21 5.38 -3.82 -0.02 1.19 16 15 C -0.13 -1.93 4.71 -26.73 -0.13 -2.05 16 16 C 0.09 1.23 0.73 -89.80 -0.07 1.17 16 17 O -0.36 -5.25 10.52 -35.23 -0.37 -5.62 16 18 C 0.03 0.35 10.33 101.05 1.04 1.39 16 19 C -0.16 -1.77 7.22 -25.92 -0.19 -1.95 16 20 C -0.14 -1.42 8.02 -25.92 -0.21 -1.63 16 21 C -0.12 -1.52 6.49 -25.92 -0.17 -1.69 16 22 H 0.06 1.43 7.11 -51.92 -0.37 1.07 16 23 H 0.05 1.00 7.71 -51.93 -0.40 0.60 16 24 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.02 0.41 7.63 -51.93 -0.40 0.02 16 26 H 0.06 1.51 6.38 -51.93 -0.33 1.18 16 27 H 0.27 8.14 6.01 -40.82 -0.25 7.89 16 28 H 0.33 7.01 8.18 -39.29 -0.32 6.69 16 29 H 0.02 0.40 7.95 -51.93 -0.41 -0.02 16 30 H 0.06 1.18 6.83 -51.93 -0.35 0.83 16 31 H 0.08 1.14 7.97 -51.93 -0.41 0.72 16 32 H 0.06 0.87 6.48 -51.93 -0.34 0.53 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.41 7.22 -51.93 -0.38 0.03 16 35 H 0.05 0.59 6.79 -51.93 -0.35 0.24 16 36 H 0.09 0.89 7.98 -51.93 -0.41 0.47 16 37 H 0.07 0.70 7.39 -51.93 -0.38 0.31 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.10 1.15 8.10 -51.93 -0.42 0.72 16 LS Contribution 317.83 15.07 4.79 4.79 Total: -1.00 -29.55 317.83 -7.75 -37.31 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.21 Total: 4.69 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 0.00 Total: -19.58 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.12 Total: -41.62 kcal Atomic # 8 Polarization: -5.25 SS G_CDS: -0.37 Total: -5.62 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.55 -7.75 -37.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310553977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.605 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds