Wall clock time and date at job start Sun Mar 29 2020 23:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46995 * 2 1 4 4 H 1.09008 * 109.46807 * 181.44047 * 3 2 1 5 5 C 1.50700 * 109.47260 * 61.43902 * 3 2 1 6 6 H 1.07993 * 120.00196 * 245.38602 * 5 3 2 7 7 C 1.37887 * 119.99796 * 65.39420 * 5 3 2 8 8 N 1.31506 * 119.99941 * 9.22869 * 7 5 3 9 9 Si 1.86795 * 119.99780 * 189.23126 * 7 5 3 10 10 H 1.48502 * 109.47141 * 269.99741 * 9 7 5 11 11 H 1.48496 * 109.47249 * 29.99645 * 9 7 5 12 12 H 1.48502 * 109.47266 * 149.99878 * 9 7 5 13 13 N 1.46902 * 109.47273 * 301.43811 * 3 2 1 14 14 C 1.46907 * 110.99962 * 274.18949 * 13 3 2 15 15 C 1.52997 * 109.46937 * 184.26395 * 14 13 3 16 16 C 1.53004 * 109.47006 * 184.42426 * 15 14 13 17 17 O 1.42898 * 112.84518 * 290.18905 * 16 15 14 18 18 C 1.42900 * 114.00252 * 304.42854 * 17 16 15 19 19 C 1.53782 * 113.61458 * 158.88114 * 16 15 14 20 20 C 1.53775 * 87.07832 * 220.01978 * 19 16 15 21 21 C 1.53777 * 87.08498 * 25.43497 * 20 19 16 22 22 H 1.09008 * 109.47022 * 304.49422 * 1 2 3 23 23 H 1.09002 * 109.46588 * 64.48911 * 1 2 3 24 24 H 1.08990 * 109.47375 * 184.49020 * 1 2 3 25 25 H 1.09001 * 109.46894 * 239.99924 * 2 1 3 26 26 H 1.09002 * 109.46898 * 119.99523 * 2 1 3 27 27 H 0.97009 * 120.00373 * 357.16141 * 8 7 5 28 28 H 1.00894 * 110.99970 * 150.23621 * 13 3 2 29 29 H 1.08999 * 109.47136 * 304.26657 * 14 13 3 30 30 H 1.08997 * 109.46837 * 64.26249 * 14 13 3 31 31 H 1.09002 * 109.46696 * 304.42057 * 15 14 13 32 32 H 1.08996 * 109.46833 * 64.42255 * 15 14 13 33 33 H 1.09002 * 109.47184 * 186.41480 * 18 17 16 34 34 H 1.09001 * 109.47128 * 306.41239 * 18 17 16 35 35 H 1.08998 * 109.46750 * 66.40860 * 18 17 16 36 36 H 1.09005 * 113.61124 * 334.56609 * 19 16 15 37 37 H 1.08991 * 113.61137 * 105.46806 * 19 16 15 38 38 H 1.09004 * 113.61579 * 270.87960 * 20 19 16 39 39 H 1.09005 * 113.69085 * 139.99149 * 20 19 16 40 40 H 1.08999 * 113.61452 * 220.02128 * 21 20 19 41 41 H 1.09000 * 113.69700 * 89.12619 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4426 -0.0258 5 6 1.5670 2.1426 1.2479 6 1 0.8744 2.9679 1.1745 7 6 2.0187 1.7294 2.4834 8 7 2.9943 0.8515 2.5670 9 14 1.2449 2.4167 4.0384 10 1 1.9762 3.6398 4.4564 11 1 -0.1768 2.7555 3.7759 12 1 1.3204 1.4013 5.1194 13 7 1.5221 2.1450 -1.1817 14 6 2.3890 1.9245 -2.3471 15 6 1.8783 2.7543 -3.5267 16 6 2.7135 2.4413 -4.7699 17 8 4.0494 2.9406 -4.6810 18 6 4.1295 4.3435 -4.4211 19 6 2.0085 2.7938 -6.0904 20 6 2.5907 1.4887 -6.6583 21 6 2.6336 0.9703 -5.2112 22 1 -0.3633 0.5820 0.8470 23 1 -0.3632 0.4426 -0.9275 24 1 -0.3633 -1.0244 0.0804 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.3683 0.4636 1.7603 28 1 1.4095 3.1303 -0.9961 29 1 3.4078 2.2264 -2.1044 30 1 2.3770 0.8678 -2.6140 31 1 0.8341 2.5081 -3.7190 32 1 1.9639 3.8146 -3.2890 33 1 5.1692 4.6654 -4.4811 34 1 3.5386 4.8843 -5.1604 35 1 3.7418 4.5509 -3.4238 36 1 0.9209 2.7919 -6.0187 37 1 2.4007 3.6913 -6.5685 38 1 3.5761 1.6096 -7.1083 39 1 1.8976 0.9417 -7.2976 40 1 3.5305 0.3957 -4.9797 41 1 1.7176 0.4695 -4.8979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310553977.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:03:58 Heat of formation + Delta-G solvation = -59.368563 kcal Electronic energy + Delta-G solvation = -18245.097716 eV Core-core repulsion = 15545.416476 eV Total energy + Delta-G solvation = -2699.681240 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.03616 -38.40255 -36.59742 -35.10274 -33.03724 -30.83170 -28.01222 -27.60136 -26.54599 -25.47615 -24.53356 -22.50647 -21.21802 -20.39076 -18.97296 -17.26039 -16.83792 -16.40620 -16.27802 -15.85973 -15.67263 -15.29874 -15.13022 -15.06931 -14.35548 -14.15629 -13.45900 -13.23689 -13.19538 -13.09487 -12.76214 -12.63787 -12.36460 -12.17847 -11.94154 -11.91981 -11.81616 -11.72176 -11.69213 -11.55620 -11.00142 -10.66361 -10.41713 -10.24711 -9.17407 -8.59872 -6.30254 1.53413 1.62214 1.79640 2.56956 2.70587 3.21090 3.33237 3.61132 3.66705 3.88336 4.00699 4.26287 4.31724 4.37556 4.42509 4.48754 4.51557 4.54986 4.65240 4.73979 4.76872 4.80500 4.83144 4.92794 4.99696 5.04303 5.09443 5.14544 5.20704 5.32320 5.37596 5.39156 5.53397 5.69049 5.88680 6.07707 6.30236 6.47728 6.58837 6.80948 7.50005 8.77450 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035073 B = 0.005288 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.153961 B = 5294.022538 C = 5643.764705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C 0.207 3.793 4 H -0.048 1.048 5 C -0.599 4.599 6 H 0.052 0.948 7 C -0.026 4.026 8 N -0.936 5.936 9 Si 1.114 2.886 10 H -0.277 1.277 11 H -0.269 1.269 12 H -0.286 1.286 13 N -0.671 5.671 14 C 0.073 3.927 15 C -0.120 4.120 16 C 0.082 3.918 17 O -0.386 6.386 18 C 0.025 3.975 19 C -0.151 4.151 20 C -0.126 4.126 21 C -0.131 4.131 22 H 0.039 0.961 23 H 0.059 0.941 24 H 0.041 0.959 25 H 0.030 0.970 26 H 0.029 0.971 27 H 0.257 0.743 28 H 0.331 0.669 29 H -0.005 1.005 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.032 0.968 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.060 0.940 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.941 4.431 -16.839 17.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C 0.097 3.903 4 H -0.031 1.031 5 C -0.637 4.637 6 H 0.070 0.930 7 C -0.225 4.225 8 N -0.573 5.573 9 Si 0.936 3.064 10 H -0.203 1.203 11 H -0.194 1.194 12 H -0.212 1.212 13 N -0.301 5.301 14 C -0.057 4.057 15 C -0.158 4.158 16 C 0.042 3.958 17 O -0.305 6.305 18 C -0.070 4.070 19 C -0.188 4.188 20 C -0.163 4.163 21 C -0.168 4.168 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.060 0.940 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.148 0.852 29 H 0.013 0.987 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.051 0.949 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.129 3.769 -15.394 16.154 hybrid contribution 1.100 0.599 -1.029 1.621 sum -2.029 4.368 -16.423 17.114 Atomic orbital electron populations 1.21305 0.94558 0.99076 1.01577 1.21378 0.97827 0.97238 0.97492 1.19090 0.89911 0.92498 0.88758 1.03104 1.22250 1.30074 1.18617 0.92809 0.92978 1.27108 0.94528 0.95800 1.05064 1.70884 1.23870 1.30316 1.32241 0.82971 0.75841 0.75632 0.71911 1.20304 1.19376 1.21150 1.60612 1.49618 1.15307 1.04581 1.21793 0.92779 0.99797 0.91304 1.21960 1.00593 0.99701 0.93551 1.22716 0.82764 0.96706 0.93587 1.87861 1.25845 1.24417 1.92376 1.22841 1.03369 0.81161 0.99677 1.23493 1.01234 0.98894 0.95221 1.22715 1.01627 0.96517 0.95432 1.23068 1.02661 0.93978 0.97134 0.94136 0.92233 0.94039 0.95127 0.95212 0.93315 0.85199 0.98706 0.92348 0.89141 0.91745 0.88630 0.92162 0.94894 0.87935 0.90592 0.90298 0.89566 0.92150 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.64 9.52 71.98 0.69 -3.95 16 2 C -0.10 -4.89 5.49 30.60 0.17 -4.72 16 3 C 0.21 10.63 1.93 44.17 0.09 10.71 16 4 H -0.05 -2.84 7.08 -2.38 -0.02 -2.86 16 5 C -0.60 -33.16 7.22 25.60 0.18 -32.97 16 6 H 0.05 2.84 7.68 -2.91 -0.02 2.82 16 7 C -0.03 -1.49 5.20 84.66 0.44 -1.05 16 8 N -0.94 -57.37 13.05 21.45 0.28 -57.09 16 9 Si 1.11 50.22 29.91 68.60 2.05 52.27 16 10 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 11 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 12 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.67 -28.55 5.59 -495.42 -2.77 -31.32 16 14 C 0.07 2.70 5.38 86.30 0.46 3.16 16 15 C -0.12 -3.36 4.71 30.59 0.14 -3.22 16 16 C 0.08 2.05 0.73 -10.27 -0.01 2.05 16 17 O -0.39 -10.90 10.52 -148.98 -1.57 -12.46 16 18 C 0.03 0.58 10.33 113.37 1.17 1.75 16 19 C -0.15 -2.83 7.22 31.12 0.22 -2.60 16 20 C -0.13 -2.32 8.02 31.12 0.25 -2.07 16 21 C -0.13 -3.07 6.49 31.12 0.20 -2.87 16 22 H 0.04 1.88 7.11 -2.38 -0.02 1.86 16 23 H 0.06 2.39 7.71 -2.39 -0.02 2.37 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.03 1.37 7.63 -2.39 -0.02 1.36 16 26 H 0.03 1.59 6.38 -2.39 -0.02 1.58 16 27 H 0.26 16.10 6.01 -92.70 -0.56 15.54 16 28 H 0.33 13.98 8.18 -89.70 -0.73 13.25 16 29 H -0.01 -0.22 7.95 -2.39 -0.02 -0.24 16 30 H 0.06 2.21 6.83 -2.39 -0.02 2.19 16 31 H 0.09 2.36 7.97 -2.39 -0.02 2.34 16 32 H 0.06 1.76 6.48 -2.39 -0.02 1.74 16 33 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.06 1.10 7.22 -2.39 -0.02 1.09 16 35 H 0.03 0.82 6.79 -2.39 -0.02 0.80 16 36 H 0.10 1.66 7.98 -2.38 -0.02 1.64 16 37 H 0.08 1.32 7.39 -2.39 -0.02 1.30 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.10 2.23 8.10 -2.39 -0.02 2.21 16 Total: -1.00 -64.04 317.83 2.47 -61.57 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.47 Total: 22.82 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 4.01 Total: -35.78 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -2.49 Total: -88.42 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: -1.57 Total: -12.46 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 2.05 Total: 52.27 kcal Total: -64.04 2.47 -61.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310553977.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.206 kcal (2) G-P(sol) polarization free energy of solvation -64.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds