Wall clock time and date at job start Sun Mar 29 2020 22:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46845 * 2 1 4 4 C 1.53003 * 109.46724 * 181.81607 * 3 2 1 5 5 C 1.52995 * 109.47498 * 61.81670 * 3 2 1 6 6 N 1.46906 * 109.47243 * 180.24769 * 5 3 2 7 7 C 1.46900 * 111.00029 * 184.51495 * 6 5 3 8 8 C 1.52999 * 109.47120 * 185.01494 * 7 6 5 9 9 C 1.50696 * 115.55122 * 54.55339 * 8 7 6 10 10 H 1.08003 * 120.00122 * 215.61332 * 9 8 7 11 11 C 1.37882 * 120.00066 * 35.33526 * 9 8 7 12 12 N 1.31508 * 119.99842 * 356.27995 * 11 9 8 13 13 Si 1.86792 * 120.00001 * 176.27886 * 11 9 8 14 14 H 1.48500 * 109.47251 * 59.99692 * 13 11 9 15 15 H 1.48498 * 109.47139 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47367 * 300.00142 * 13 11 9 17 17 C 1.52998 * 117.49937 * 200.22717 * 8 7 6 18 18 C 1.53001 * 117.49219 * 268.88495 * 8 7 6 19 19 O 1.42896 * 109.47310 * 301.81180 * 3 2 1 20 20 C 1.42899 * 114.00109 * 300.00426 * 19 3 2 21 21 H 1.08998 * 109.47157 * 184.58294 * 1 2 3 22 22 H 1.08996 * 109.46833 * 304.58757 * 1 2 3 23 23 H 1.09003 * 109.46873 * 64.58654 * 1 2 3 24 24 H 1.08998 * 109.47452 * 239.99703 * 2 1 3 25 25 H 1.09000 * 109.46424 * 119.99680 * 2 1 3 26 26 H 1.09002 * 109.47393 * 299.99767 * 4 3 2 27 27 H 1.09003 * 109.47243 * 59.99843 * 4 3 2 28 28 H 1.09005 * 109.47410 * 179.97438 * 4 3 2 29 29 H 1.09005 * 109.47246 * 60.24820 * 5 3 2 30 30 H 1.09001 * 109.47038 * 300.24720 * 5 3 2 31 31 H 1.00897 * 110.99694 * 308.46931 * 6 5 3 32 32 H 1.08996 * 109.47239 * 65.01067 * 7 6 5 33 33 H 1.09001 * 109.46691 * 305.01007 * 7 6 5 34 34 H 0.96997 * 120.00296 * 184.99953 * 12 11 9 35 35 H 1.09000 * 117.50131 * 215.00031 * 17 8 7 36 36 H 1.09007 * 117.49876 * 0.02562 * 17 8 7 37 37 H 1.08991 * 117.50458 * 359.97438 * 18 8 7 38 38 H 1.09003 * 117.49655 * 144.97921 * 18 8 7 39 39 H 1.09000 * 109.47323 * 299.99694 * 20 19 3 40 40 H 1.09005 * 109.47194 * 59.99813 * 20 19 3 41 41 H 1.09004 * 109.47621 * 179.97438 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5693 1.4427 -0.0457 5 6 1.5677 2.1505 1.2714 6 7 2.0524 3.5373 1.2685 7 6 1.7089 4.2176 2.5244 8 6 2.1173 5.6894 2.4353 9 6 1.5630 6.4476 1.2568 10 1 2.1595 7.2082 0.7750 11 6 0.2965 6.1663 0.7900 12 7 -0.3994 5.1874 1.3256 13 14 -0.4309 7.1757 -0.6033 14 1 0.4307 7.0520 -1.8064 15 1 -1.7936 6.6762 -0.9174 16 1 -0.5077 8.6012 -0.1941 17 6 2.2925 6.4546 3.7485 18 6 3.5192 6.0639 2.9204 19 8 1.5292 2.1283 -1.1448 20 6 1.9139 1.5451 -2.3914 21 1 -0.3633 -1.0244 0.0821 22 1 -0.3633 0.5834 0.8460 23 1 -0.3633 0.4410 -0.9283 24 1 1.8935 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.9591 0.9196 0.8276 27 1 3.9059 0.9383 -0.9515 28 1 3.9328 2.4704 -0.0462 29 1 1.9611 1.6299 2.1446 30 1 0.4783 2.1464 1.3062 31 1 3.0462 3.5725 1.0983 32 1 2.2376 3.7432 3.3510 33 1 0.6342 4.1483 2.6928 34 1 -1.2596 4.9421 0.9506 35 1 2.0069 7.5064 3.7601 36 1 2.1172 5.9094 4.6760 37 1 4.1503 5.2621 3.3033 38 1 4.0407 6.8586 2.3869 39 1 3.0008 1.5474 -2.4736 40 1 1.5479 0.5195 -2.4410 41 1 1.4861 2.1231 -3.2105 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000322695962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:32 Heat of formation + Delta-G solvation = -16.341219 kcal Electronic energy + Delta-G solvation = -18836.627108 eV Core-core repulsion = 16138.811674 eV Total energy + Delta-G solvation = -2697.815434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.98889 -36.73710 -34.25420 -32.53407 -31.81468 -29.66522 -27.09625 -25.65478 -24.95608 -23.62750 -22.24680 -21.00496 -19.32470 -18.69943 -16.46913 -15.72992 -15.21734 -14.95627 -14.56074 -14.30404 -13.86251 -13.37459 -13.05225 -12.94126 -12.91206 -12.17317 -11.99920 -11.81019 -11.72851 -11.27985 -11.20798 -11.00393 -10.86885 -10.76080 -10.54062 -10.39440 -10.33030 -9.86422 -9.80016 -9.20440 -9.01081 -8.70711 -8.50274 -7.93211 -6.91820 -5.64697 -3.75230 3.48028 3.51828 3.55169 4.23994 4.62417 4.96416 4.98705 5.23450 5.25420 5.46795 5.56212 5.61207 5.64176 5.74248 5.77904 5.81923 5.90053 6.06266 6.09256 6.11693 6.16732 6.25473 6.35084 6.46679 6.50377 6.52150 6.71230 6.75409 6.82056 6.94899 7.03750 7.31759 7.43149 7.78649 7.82506 8.24177 8.46154 8.59056 8.85474 9.18073 9.85105 11.29981 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019942 B = 0.008918 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.726806 B = 3138.947028 C = 3830.762732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.118 3.882 4 C -0.181 4.181 5 C 0.082 3.918 6 N -0.634 5.634 7 C 0.110 3.890 8 C 0.065 3.935 9 C -0.479 4.479 10 H 0.051 0.949 11 C 0.091 3.909 12 N -0.864 5.864 13 Si 0.891 3.109 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.283 1.283 17 C -0.212 4.212 18 C -0.221 4.221 19 O -0.341 6.341 20 C 0.023 3.977 21 H 0.045 0.955 22 H 0.064 0.936 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.017 0.983 30 H 0.082 0.918 31 H 0.315 0.685 32 H -0.031 1.031 33 H 0.117 0.883 34 H 0.255 0.745 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.033 0.967 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.880 -10.743 -2.656 11.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.077 3.923 4 C -0.238 4.238 5 C -0.048 4.048 6 N -0.263 5.263 7 C -0.018 4.018 8 C 0.065 3.935 9 C -0.516 4.516 10 H 0.069 0.931 11 C -0.112 4.112 12 N -0.500 5.500 13 Si 0.720 3.280 14 H -0.204 1.204 15 H -0.216 1.216 16 H -0.210 1.210 17 C -0.251 4.251 18 C -0.258 4.258 19 O -0.259 6.259 20 C -0.074 4.074 21 H 0.064 0.936 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.035 0.965 30 H 0.100 0.900 31 H 0.133 0.867 32 H -0.013 1.013 33 H 0.135 0.865 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.980 -10.391 -2.956 11.207 hybrid contribution 0.628 -0.197 -0.199 0.687 sum 3.608 -10.588 -3.155 11.622 Atomic orbital electron populations 1.21728 0.94996 1.00591 1.03234 1.22106 0.97401 0.97209 1.01784 1.21562 0.91960 0.90581 0.88151 1.22445 0.96759 1.03174 1.01463 1.21853 1.01645 0.89939 0.91389 1.60015 1.17877 1.11260 1.37155 1.21676 1.03206 0.91516 0.85439 1.19019 0.90347 0.92174 0.91988 1.20187 0.98923 1.19125 1.13347 0.93120 1.24713 0.96545 0.94483 0.95503 1.69734 1.13144 1.27437 1.39693 0.86707 0.78140 0.80049 0.83139 1.20442 1.21603 1.20958 1.22983 1.04316 1.00834 0.96933 1.22902 0.92614 1.02842 1.07440 1.88279 1.73258 1.52413 1.11965 1.22727 0.98985 0.97778 0.87920 0.93608 0.91730 0.92238 0.92150 0.91582 0.92297 0.92744 0.90801 0.96547 0.90017 0.86691 1.01339 0.86524 0.93435 0.90590 0.92089 0.92115 0.90962 0.94541 0.94817 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.49 37.16 0.35 -1.67 16 2 C -0.15 -1.95 4.55 -26.73 -0.12 -2.07 16 3 C 0.12 1.89 0.57 -90.62 -0.05 1.84 16 4 C -0.18 -2.57 7.94 37.16 0.29 -2.28 16 5 C 0.08 1.54 4.61 -3.82 -0.02 1.53 16 6 N -0.63 -14.08 5.77 -113.78 -0.66 -14.74 16 7 C 0.11 2.64 4.60 -3.82 -0.02 2.62 16 8 C 0.07 1.66 2.15 -155.66 -0.33 1.33 16 9 C -0.48 -13.40 8.75 -34.44 -0.30 -13.71 16 10 H 0.05 1.44 7.82 -52.48 -0.41 1.03 16 11 C 0.09 2.54 5.32 -17.82 -0.09 2.45 16 12 N -0.86 -24.09 10.14 55.43 0.56 -23.52 16 13 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 17 C -0.21 -4.97 9.96 -26.69 -0.27 -5.23 16 18 C -0.22 -4.98 9.93 -26.69 -0.26 -5.25 16 19 O -0.34 -6.33 9.54 -35.23 -0.34 -6.66 16 20 C 0.02 0.33 10.21 101.05 1.03 1.36 16 21 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.96 6.24 -51.93 -0.32 0.64 16 23 H 0.06 0.87 7.78 -51.93 -0.40 0.46 16 24 H 0.06 0.72 6.64 -51.93 -0.34 0.38 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.68 6.54 -51.93 -0.34 0.34 16 28 H 0.07 1.17 6.47 -51.93 -0.34 0.83 16 29 H 0.02 0.29 8.13 -51.93 -0.42 -0.13 16 30 H 0.08 1.70 6.36 -51.93 -0.33 1.37 16 31 H 0.32 6.72 6.67 -39.29 -0.26 6.46 16 32 H -0.03 -0.71 8.09 -51.93 -0.42 -1.13 16 33 H 0.12 3.10 5.89 -51.93 -0.31 2.79 16 34 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 35 H 0.08 1.79 8.14 -51.93 -0.42 1.36 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 39 H 0.04 0.47 6.42 -51.93 -0.33 0.14 16 40 H 0.03 0.42 6.46 -51.93 -0.34 0.08 16 41 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -28.83 317.35 -7.55 -36.38 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -7.09 Total: 5.74 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 0.21 Total: -19.08 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.09 Total: -38.26 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: -0.34 Total: -6.66 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.83 -7.55 -36.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322695962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.038 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds