Wall clock time and date at job start Sun Mar 29 2020 22:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 109.46845 * 2 1 4 4 C 1.53003 * 109.46724 * 181.81607 * 3 2 1 5 5 C 1.52995 * 109.47498 * 61.81670 * 3 2 1 6 6 N 1.46906 * 109.47243 * 180.24769 * 5 3 2 7 7 C 1.46900 * 111.00029 * 184.51495 * 6 5 3 8 8 C 1.52999 * 109.47120 * 185.01494 * 7 6 5 9 9 C 1.50696 * 115.55122 * 54.55339 * 8 7 6 10 10 H 1.08003 * 120.00122 * 215.61332 * 9 8 7 11 11 C 1.37882 * 120.00066 * 35.33526 * 9 8 7 12 12 N 1.31508 * 119.99842 * 356.27995 * 11 9 8 13 13 Si 1.86792 * 120.00001 * 176.27886 * 11 9 8 14 14 H 1.48500 * 109.47251 * 59.99692 * 13 11 9 15 15 H 1.48498 * 109.47139 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47367 * 300.00142 * 13 11 9 17 17 C 1.52998 * 117.49937 * 200.22717 * 8 7 6 18 18 C 1.53001 * 117.49219 * 268.88495 * 8 7 6 19 19 O 1.42896 * 109.47310 * 301.81180 * 3 2 1 20 20 C 1.42899 * 114.00109 * 300.00426 * 19 3 2 21 21 H 1.08998 * 109.47157 * 184.58294 * 1 2 3 22 22 H 1.08996 * 109.46833 * 304.58757 * 1 2 3 23 23 H 1.09003 * 109.46873 * 64.58654 * 1 2 3 24 24 H 1.08998 * 109.47452 * 239.99703 * 2 1 3 25 25 H 1.09000 * 109.46424 * 119.99680 * 2 1 3 26 26 H 1.09002 * 109.47393 * 299.99767 * 4 3 2 27 27 H 1.09003 * 109.47243 * 59.99843 * 4 3 2 28 28 H 1.09005 * 109.47410 * 179.97438 * 4 3 2 29 29 H 1.09005 * 109.47246 * 60.24820 * 5 3 2 30 30 H 1.09001 * 109.47038 * 300.24720 * 5 3 2 31 31 H 1.00897 * 110.99694 * 308.46931 * 6 5 3 32 32 H 1.08996 * 109.47239 * 65.01067 * 7 6 5 33 33 H 1.09001 * 109.46691 * 305.01007 * 7 6 5 34 34 H 0.96997 * 120.00296 * 184.99953 * 12 11 9 35 35 H 1.09000 * 117.50131 * 215.00031 * 17 8 7 36 36 H 1.09007 * 117.49876 * 0.02562 * 17 8 7 37 37 H 1.08991 * 117.50458 * 359.97438 * 18 8 7 38 38 H 1.09003 * 117.49655 * 144.97921 * 18 8 7 39 39 H 1.09000 * 109.47323 * 299.99694 * 20 19 3 40 40 H 1.09005 * 109.47194 * 59.99813 * 20 19 3 41 41 H 1.09004 * 109.47621 * 179.97438 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5693 1.4427 -0.0457 5 6 1.5677 2.1505 1.2714 6 7 2.0524 3.5373 1.2685 7 6 1.7089 4.2176 2.5244 8 6 2.1173 5.6894 2.4353 9 6 1.5630 6.4476 1.2568 10 1 2.1595 7.2082 0.7750 11 6 0.2965 6.1663 0.7900 12 7 -0.3994 5.1874 1.3256 13 14 -0.4309 7.1757 -0.6033 14 1 0.4307 7.0520 -1.8064 15 1 -1.7936 6.6762 -0.9174 16 1 -0.5077 8.6012 -0.1941 17 6 2.2925 6.4546 3.7485 18 6 3.5192 6.0639 2.9204 19 8 1.5292 2.1283 -1.1448 20 6 1.9139 1.5451 -2.3914 21 1 -0.3633 -1.0244 0.0821 22 1 -0.3633 0.5834 0.8460 23 1 -0.3633 0.4410 -0.9283 24 1 1.8935 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.9591 0.9196 0.8276 27 1 3.9059 0.9383 -0.9515 28 1 3.9328 2.4704 -0.0462 29 1 1.9611 1.6299 2.1446 30 1 0.4783 2.1464 1.3062 31 1 3.0462 3.5725 1.0983 32 1 2.2376 3.7432 3.3510 33 1 0.6342 4.1483 2.6928 34 1 -1.2596 4.9421 0.9506 35 1 2.0069 7.5064 3.7601 36 1 2.1172 5.9094 4.6760 37 1 4.1503 5.2621 3.3033 38 1 4.0407 6.8586 2.3869 39 1 3.0008 1.5474 -2.4736 40 1 1.5479 0.5195 -2.4410 41 1 1.4861 2.1231 -3.2105 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000322695962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:32 Heat of formation + Delta-G solvation = -33.862710 kcal Electronic energy + Delta-G solvation = -18837.386897 eV Core-core repulsion = 16138.811674 eV Total energy + Delta-G solvation = -2698.575223 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.25785 -38.58315 -35.75484 -34.01333 -33.76776 -30.87809 -28.38518 -27.46987 -26.67430 -24.94093 -23.71779 -22.83433 -20.82828 -20.40845 -18.25060 -17.23695 -16.59236 -16.48068 -16.22261 -15.79063 -15.37673 -15.07826 -14.81936 -14.33728 -14.02108 -13.68565 -13.41651 -13.13379 -13.10858 -12.82975 -12.79894 -12.74396 -12.39968 -12.33197 -12.21122 -12.02171 -11.84321 -11.65716 -11.28815 -10.92699 -10.71593 -10.45137 -10.21928 -9.94045 -8.61613 -7.73556 -5.90959 1.46789 1.49482 1.54386 2.56068 3.04760 3.19908 3.63024 3.81593 3.86592 4.08879 4.15092 4.39881 4.41821 4.50222 4.58922 4.60664 4.63474 4.75084 4.76626 4.80237 4.86236 4.94552 4.95621 4.99239 5.02971 5.06215 5.11721 5.17982 5.30408 5.40625 5.43669 5.52188 5.58477 5.76215 6.18402 6.54400 6.57539 6.77389 7.06970 7.12903 7.70207 9.15918 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019942 B = 0.008918 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.726806 B = 3138.947028 C = 3830.762732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.140 4.140 3 C 0.116 3.884 4 C -0.175 4.175 5 C 0.084 3.916 6 N -0.649 5.649 7 C 0.123 3.877 8 C 0.032 3.968 9 C -0.497 4.497 10 H 0.036 0.964 11 C 0.053 3.947 12 N -0.874 5.874 13 Si 0.939 3.061 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.279 1.279 17 C -0.210 4.210 18 C -0.199 4.199 19 O -0.384 6.384 20 C 0.020 3.980 21 H 0.069 0.931 22 H 0.042 0.958 23 H 0.044 0.956 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.054 0.946 31 H 0.320 0.680 32 H -0.020 1.020 33 H 0.087 0.913 34 H 0.251 0.749 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.970 -12.115 -2.926 13.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.178 4.178 3 C 0.076 3.924 4 C -0.232 4.232 5 C -0.045 4.045 6 N -0.279 5.279 7 C -0.006 4.006 8 C 0.031 3.969 9 C -0.534 4.534 10 H 0.055 0.945 11 C -0.149 4.149 12 N -0.510 5.510 13 Si 0.767 3.233 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.205 1.205 17 C -0.248 4.248 18 C -0.236 4.236 19 O -0.303 6.303 20 C -0.077 4.077 21 H 0.088 0.912 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.138 0.862 32 H -0.003 1.003 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.079 -11.765 -3.225 12.863 hybrid contribution 0.297 0.240 -0.107 0.397 sum 4.376 -11.525 -3.332 12.770 Atomic orbital electron populations 1.21695 0.95641 1.01503 1.01517 1.22067 0.96759 0.95417 1.03538 1.21599 0.93116 0.91451 0.86191 1.22381 0.95168 1.02397 1.03298 1.21832 0.99992 0.88802 0.93909 1.59901 1.18247 1.13330 1.36449 1.21370 1.01373 0.91231 0.86669 1.19146 0.92776 0.92887 0.92100 1.20368 0.99200 1.19347 1.14523 0.94542 1.25250 0.96915 0.95350 0.97373 1.69899 1.12921 1.28021 1.40194 0.85950 0.77370 0.79113 0.80893 1.20790 1.21412 1.20481 1.22975 1.04683 1.00370 0.96801 1.22884 0.91747 1.03001 1.05947 1.88207 1.74227 1.54137 1.13737 1.22870 0.99858 0.98660 0.86266 0.91204 0.93866 0.93672 0.90104 0.89950 0.90632 0.90720 0.92830 0.95087 0.92764 0.86198 1.00254 0.89478 0.93963 0.91285 0.90568 0.89848 0.90970 0.93283 0.92822 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.49 71.98 0.68 -3.13 16 2 C -0.14 -3.35 4.55 30.60 0.14 -3.22 16 3 C 0.12 3.57 0.57 -10.80 -0.01 3.56 16 4 C -0.17 -4.57 7.94 71.98 0.57 -3.99 16 5 C 0.08 3.16 4.61 86.30 0.40 3.56 16 6 N -0.65 -28.88 5.77 -513.88 -2.97 -31.85 16 7 C 0.12 5.89 4.60 86.30 0.40 6.29 16 8 C 0.03 1.59 2.15 -52.93 -0.11 1.48 16 9 C -0.50 -28.11 8.75 25.60 0.22 -27.88 16 10 H 0.04 2.10 7.82 -2.91 -0.02 2.08 16 11 C 0.05 3.00 5.32 84.66 0.45 3.45 16 12 N -0.87 -49.67 10.14 21.45 0.22 -49.45 16 13 Si 0.94 45.93 29.54 68.60 2.03 47.95 16 14 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 15 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 16 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 17 C -0.21 -9.62 9.96 30.62 0.30 -9.32 16 18 C -0.20 -8.66 9.93 30.62 0.30 -8.35 16 19 O -0.38 -14.01 9.54 -148.98 -1.42 -15.43 16 20 C 0.02 0.53 10.21 113.37 1.16 1.68 16 21 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.04 1.29 6.24 -2.39 -0.01 1.28 16 23 H 0.04 1.28 7.78 -2.39 -0.02 1.26 16 24 H 0.08 1.63 6.64 -2.39 -0.02 1.62 16 25 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.07 1.63 6.54 -2.39 -0.02 1.61 16 28 H 0.05 1.62 6.47 -2.38 -0.02 1.60 16 29 H 0.03 1.07 8.13 -2.38 -0.02 1.05 16 30 H 0.05 2.32 6.36 -2.39 -0.02 2.31 16 31 H 0.32 13.51 6.67 -89.70 -0.60 12.92 16 32 H -0.02 -0.90 8.09 -2.39 -0.02 -0.92 16 33 H 0.09 4.73 5.89 -2.39 -0.01 4.71 16 34 H 0.25 14.02 8.32 -92.71 -0.77 13.25 16 35 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 36 H 0.08 3.22 8.14 -2.38 -0.02 3.20 16 37 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.07 3.12 8.14 -2.39 -0.02 3.11 16 39 H 0.05 1.16 6.42 -2.39 -0.02 1.14 16 40 H 0.05 1.19 6.46 -2.38 -0.02 1.17 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -61.73 317.35 2.76 -58.97 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.39 Total: 25.66 kcal Atomic # 6 Polarization: -40.37 SS G_CDS: 4.51 Total: -35.86 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -2.75 Total: -81.30 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -1.42 Total: -15.43 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -61.73 2.76 -58.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322695962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.106 kcal (2) G-P(sol) polarization free energy of solvation -61.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds