Wall clock time and date at job start Sun Mar 29 2020 22:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47226 * 2 1 4 4 C 1.53002 * 109.47306 * 59.99513 * 3 2 1 5 5 C 1.52997 * 109.47253 * 179.97438 * 3 2 1 6 6 N 1.46904 * 109.47240 * 184.99531 * 5 3 2 7 7 C 1.46904 * 110.99787 * 180.02562 * 6 5 3 8 8 C 1.53001 * 109.46936 * 184.37235 * 7 6 5 9 9 C 1.50702 * 115.54841 * 301.90436 * 8 7 6 10 10 H 1.08006 * 119.99589 * 95.21382 * 9 8 7 11 11 C 1.37870 * 120.00144 * 275.21363 * 9 8 7 12 12 N 1.31514 * 120.00201 * 7.19663 * 11 9 8 13 13 Si 1.86809 * 120.00173 * 187.20101 * 11 9 8 14 14 H 1.48495 * 109.46719 * 270.00170 * 13 11 9 15 15 H 1.48501 * 109.47003 * 29.99850 * 13 11 9 16 16 H 1.48493 * 109.46939 * 149.99954 * 13 11 9 17 17 C 1.53002 * 117.49994 * 87.57206 * 8 7 6 18 18 C 1.52996 * 117.49954 * 156.23249 * 8 7 6 19 19 O 1.42905 * 109.47017 * 299.99958 * 3 2 1 20 20 C 1.42900 * 113.99470 * 299.99924 * 19 3 2 21 21 H 1.08998 * 109.47019 * 300.00464 * 1 2 3 22 22 H 1.08997 * 109.46736 * 60.00465 * 1 2 3 23 23 H 1.09007 * 109.46960 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47019 * 239.99536 * 2 1 3 25 25 H 1.09005 * 109.46862 * 119.99754 * 2 1 3 26 26 H 1.08997 * 109.46925 * 179.97438 * 4 3 2 27 27 H 1.08994 * 109.47349 * 300.00135 * 4 3 2 28 28 H 1.09005 * 109.46963 * 60.00135 * 4 3 2 29 29 H 1.09005 * 109.47081 * 65.00151 * 5 3 2 30 30 H 1.08995 * 109.47382 * 304.99887 * 5 3 2 31 31 H 1.00901 * 110.99574 * 56.05475 * 6 5 3 32 32 H 1.09002 * 109.47233 * 64.37379 * 7 6 5 33 33 H 1.08998 * 109.47093 * 304.36952 * 7 6 5 34 34 H 0.97002 * 119.99505 * 355.40597 * 12 11 9 35 35 H 1.08998 * 117.50270 * 215.00321 * 17 8 7 36 36 H 1.08997 * 117.49716 * 0.02605 * 17 8 7 37 37 H 1.08996 * 117.49785 * 359.97438 * 18 8 7 38 38 H 1.09002 * 117.49911 * 144.97448 * 18 8 7 39 39 H 1.09002 * 109.46763 * 180.02562 * 20 19 3 40 40 H 1.09002 * 109.47179 * 299.99762 * 20 19 3 41 41 H 1.08993 * 109.47556 * 60.00183 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5300 2.1638 1.2492 5 6 3.5700 1.4424 0.0006 6 7 4.0597 2.8222 0.1212 7 6 5.5282 2.8612 0.1247 8 6 5.9996 4.2975 0.3606 9 6 5.5139 5.3138 -0.6407 10 1 4.6307 5.8990 -0.4310 11 6 6.1970 5.4964 -1.8242 12 7 7.1857 4.6903 -2.1441 13 14 5.7182 6.8890 -2.9737 14 1 4.6885 6.4094 -3.9301 15 1 5.1697 8.0187 -2.1810 16 1 6.9158 7.3458 -3.7234 17 6 6.1654 4.7576 1.8104 18 6 7.4000 4.4945 0.9445 19 8 1.5637 2.1161 -1.1668 20 6 1.9854 1.5196 -2.3950 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8901 26 1 1.8937 3.1912 1.2494 27 1 0.4400 2.1638 1.2492 28 1 1.8933 1.6499 2.1392 29 1 3.9338 1.0080 -0.9306 30 1 3.9330 0.8532 0.8427 31 1 3.6839 3.2685 0.9445 32 1 5.9033 2.5089 -0.8363 33 1 5.9069 2.2193 0.9200 34 1 7.4780 4.0094 -1.5181 35 1 5.9231 5.7952 2.0400 36 1 5.9390 4.0368 2.5961 37 1 7.9852 3.6009 1.1610 38 1 7.9702 5.3589 0.6042 39 1 1.5831 2.0895 -3.2326 40 1 3.0743 1.5213 -2.4447 41 1 1.6210 0.4936 -2.4447 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000322695963.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:34 Heat of formation + Delta-G solvation = -30.883621 kcal Electronic energy + Delta-G solvation = -18534.740922 eV Core-core repulsion = 15836.294882 eV Total energy + Delta-G solvation = -2698.446040 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.21892 -37.11899 -34.37952 -33.21666 -31.70608 -29.64096 -27.13565 -25.80740 -24.99199 -24.23409 -22.15293 -21.15155 -19.56418 -19.15412 -16.78725 -16.13141 -15.51469 -15.18337 -14.89474 -14.04853 -13.89525 -13.62825 -13.40886 -13.06483 -12.84752 -12.42941 -12.24994 -12.03539 -11.88126 -11.67200 -11.41659 -11.20189 -11.19393 -10.86722 -10.68097 -10.59789 -10.39051 -10.07261 -10.02144 -9.49586 -9.05879 -8.43922 -8.32419 -8.16371 -7.49504 -6.18872 -3.87338 3.53302 3.56369 3.71562 4.05906 4.61825 4.67295 4.89956 5.01173 5.11363 5.29303 5.33005 5.48161 5.50138 5.57032 5.67135 5.75896 5.78277 5.82668 5.90459 5.94098 6.02705 6.05812 6.12692 6.19972 6.24582 6.27575 6.34438 6.39383 6.53286 6.58581 6.73103 6.91920 7.28875 7.35879 7.60282 7.91631 8.17017 8.44802 8.61275 9.04790 9.83778 11.21318 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024258 B = 0.007058 C = 0.006071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.986922 B = 3966.269021 C = 4611.015691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.150 4.150 3 C 0.120 3.880 4 C -0.143 4.143 5 C 0.033 3.967 6 N -0.653 5.653 7 C 0.103 3.897 8 C 0.027 3.973 9 C -0.542 4.542 10 H 0.052 0.948 11 C 0.025 3.975 12 N -0.915 5.915 13 Si 1.068 2.932 14 H -0.289 1.289 15 H -0.290 1.290 16 H -0.288 1.288 17 C -0.202 4.202 18 C -0.181 4.181 19 O -0.359 6.359 20 C 0.030 3.970 21 H 0.057 0.943 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.022 0.978 31 H 0.334 0.666 32 H 0.065 0.935 33 H -0.007 1.007 34 H 0.271 0.729 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.861 -8.871 4.707 14.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.080 3.920 4 C -0.200 4.200 5 C -0.097 4.097 6 N -0.284 5.284 7 C -0.026 4.026 8 C 0.026 3.974 9 C -0.580 4.580 10 H 0.070 0.930 11 C -0.179 4.179 12 N -0.551 5.551 13 Si 0.898 3.102 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.214 1.214 17 C -0.239 4.239 18 C -0.219 4.219 19 O -0.278 6.278 20 C -0.067 4.067 21 H 0.076 0.924 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.040 0.960 31 H 0.154 0.846 32 H 0.083 0.917 33 H 0.011 0.989 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.068 0.932 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.683 -7.889 2.557 12.749 hybrid contribution 0.200 -1.432 2.350 2.759 sum -9.484 -9.322 4.907 14.174 Atomic orbital electron populations 1.21717 0.95143 1.00903 1.02619 1.22111 0.97105 0.97254 1.02347 1.21445 0.92283 0.90939 0.87306 1.21797 1.01714 1.01794 0.94741 1.22538 0.94725 0.91957 1.00468 1.60203 1.08586 1.13494 1.46122 1.21598 0.86325 0.96333 0.98325 1.19170 0.94163 0.92892 0.91131 1.21098 1.12967 1.20322 1.03663 0.92997 1.25652 0.94883 1.00140 0.97262 1.70708 1.28393 1.18753 1.37259 0.83557 0.75678 0.75383 0.75611 1.21579 1.21661 1.21395 1.22898 1.05157 1.00452 0.95413 1.22752 0.91870 1.01281 1.05997 1.87970 1.73292 1.53760 1.12756 1.22701 1.00191 0.96913 0.86852 0.92398 0.92080 0.93300 0.91686 0.91425 0.90738 0.91724 0.91912 0.91152 0.95972 0.84626 0.91661 0.98904 0.91768 0.90181 0.92027 0.91858 0.89787 0.90172 0.93207 0.94961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.41 37.16 0.35 -1.20 16 2 C -0.15 -1.76 4.61 -26.73 -0.12 -1.89 16 3 C 0.12 1.75 0.59 -90.62 -0.05 1.70 16 4 C -0.14 -1.91 8.03 37.16 0.30 -1.62 16 5 C 0.03 0.55 4.47 -3.82 -0.02 0.54 16 6 N -0.65 -13.26 6.17 -113.77 -0.70 -13.96 16 7 C 0.10 2.33 5.50 -3.82 -0.02 2.31 16 8 C 0.03 0.67 1.06 -155.66 -0.16 0.51 16 9 C -0.54 -15.19 8.59 -34.44 -0.30 -15.48 16 10 H 0.05 1.50 7.82 -52.48 -0.41 1.09 16 11 C 0.02 0.71 5.39 -17.82 -0.10 0.61 16 12 N -0.92 -27.42 13.57 55.43 0.75 -26.67 16 13 Si 1.07 25.93 29.91 -169.99 -5.08 20.84 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 C -0.20 -4.42 9.94 -26.69 -0.27 -4.69 16 18 C -0.18 -4.23 8.76 -26.70 -0.23 -4.47 16 19 O -0.36 -6.05 9.62 -35.23 -0.34 -6.38 16 20 C 0.03 0.45 10.22 101.05 1.03 1.48 16 21 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 22 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.75 6.54 -51.93 -0.34 0.41 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 1.13 6.51 -51.93 -0.34 0.79 16 27 H 0.06 0.79 6.43 -51.93 -0.33 0.45 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.22 6.29 -51.93 -0.33 0.89 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.33 6.56 6.56 -39.29 -0.26 6.30 16 32 H 0.07 1.63 7.75 -51.93 -0.40 1.23 16 33 H -0.01 -0.15 8.10 -51.93 -0.42 -0.57 16 34 H 0.27 8.05 6.14 -40.82 -0.25 7.80 16 35 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.08 2.10 8.14 -51.93 -0.42 1.68 16 39 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.83 6.31 -51.93 -0.33 0.50 16 41 H 0.03 0.40 6.42 -51.93 -0.33 0.07 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -30.21 319.42 -7.22 -37.43 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -7.07 Total: 6.13 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 0.41 Total: -22.20 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.05 Total: -40.63 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.34 Total: -6.38 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.21 -7.22 -37.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000322695963.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.549 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds