Wall clock time and date at job start Sun Mar 29 2020 22:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 5 5 C 1.50698 * 109.47184 * 300.00333 * 4 2 1 6 6 H 1.08005 * 119.99819 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00046 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47454 * 59.99696 * 9 7 5 11 11 H 1.48506 * 109.47297 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47261 * 299.99689 * 9 7 5 13 13 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 14 14 N 1.46896 * 109.47114 * 60.00200 * 13 2 1 15 15 C 1.46904 * 111.00095 * 180.02562 * 14 13 2 16 16 H 1.08995 * 110.01552 * 34.93523 * 15 14 13 17 17 C 1.54268 * 110.02961 * 273.54509 * 15 14 13 18 18 C 1.54884 * 104.19447 * 217.10768 * 17 15 14 19 19 C 1.54889 * 102.75143 * 37.94175 * 18 17 15 20 20 C 1.53872 * 110.03176 * 156.37782 * 15 14 13 21 21 H 1.08996 * 110.03901 * 359.97438 * 20 15 14 22 22 O 1.42901 * 110.03161 * 238.56443 * 20 15 14 23 23 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 24 24 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 25 25 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 28 28 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 29 29 H 1.09001 * 109.47002 * 59.99738 * 4 2 1 30 30 H 1.08993 * 109.46955 * 180.02562 * 4 2 1 31 31 H 0.96996 * 120.00505 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.46952 * 180.02562 * 13 2 1 33 33 H 1.09001 * 109.46832 * 300.00199 * 13 2 1 34 34 H 1.00907 * 110.99931 * 303.95289 * 14 13 2 35 35 H 1.09010 * 110.48318 * 335.77897 * 17 15 14 36 36 H 1.08996 * 110.48727 * 98.41984 * 17 15 14 37 37 H 1.09005 * 110.75616 * 156.26068 * 18 17 15 38 38 H 1.09002 * 110.75260 * 279.62441 * 18 17 15 39 39 H 1.08996 * 110.48898 * 80.73973 * 19 18 17 40 40 H 1.09005 * 110.48377 * 203.38168 * 19 18 17 41 41 H 0.96702 * 114.00129 * 180.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.5376 -0.0107 2.4797 6 1 0.9170 0.8676 2.3806 7 6 1.8711 -0.4814 3.7320 8 7 2.6273 -1.5506 3.8528 9 14 1.2490 0.3997 5.2572 10 1 -0.2360 0.3998 5.2577 11 1 1.7439 -0.3003 6.4698 12 1 1.7440 1.7998 5.2566 13 6 2.0400 -0.7213 -1.2492 14 7 1.5504 -0.0289 -2.4486 15 6 2.0209 -0.6955 -3.6702 16 1 2.0644 -1.7733 -3.5140 17 6 3.4147 -0.1613 -4.0602 18 6 3.3834 -0.1130 -5.6080 19 6 1.9362 0.3515 -5.9064 20 6 1.0809 -0.3694 -4.8440 21 1 0.2753 0.2830 -4.5073 22 8 0.5397 -1.5753 -5.3872 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6766 -1.7488 1.2494 30 1 3.1299 -0.7208 1.2495 31 1 2.8622 -1.8815 4.7338 32 1 3.1300 -0.7217 -1.2489 33 1 1.6766 -1.7490 -1.2491 34 1 0.5438 0.0412 -2.4401 35 1 3.5690 0.8370 -3.6504 36 1 4.1939 -0.8409 -3.7153 37 1 4.1068 0.6093 -5.9866 38 1 3.5664 -1.1016 -6.0291 39 1 1.8518 1.4325 -5.7948 40 1 1.6366 0.0460 -6.9089 41 1 -0.0614 -1.4362 -6.1319 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000323167723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:02 Heat of formation + Delta-G solvation = -77.842180 kcal Electronic energy + Delta-G solvation = -18079.271569 eV Core-core repulsion = 15378.789253 eV Total energy + Delta-G solvation = -2700.482316 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.23869 -37.20011 -35.14046 -33.24328 -31.90173 -27.90445 -27.49918 -26.61415 -26.28886 -24.54754 -22.27117 -21.00879 -19.93830 -17.89005 -17.11055 -16.19823 -15.79725 -15.59951 -15.02490 -14.53131 -13.82016 -13.72703 -13.22515 -12.99981 -12.63385 -12.60055 -12.00796 -11.86631 -11.80086 -11.42470 -11.16902 -10.97795 -10.85067 -10.77710 -10.64619 -10.58237 -10.45914 -10.20113 -10.07955 -10.04609 -9.64917 -8.98550 -8.79940 -8.28716 -8.09073 -5.93260 -3.93473 3.36552 3.41125 3.43295 3.95206 4.42562 4.47793 4.52191 4.82945 4.88888 5.28289 5.39381 5.42352 5.52424 5.57262 5.68513 5.75752 5.76165 5.82153 5.92533 5.97227 6.01617 6.13927 6.29446 6.34922 6.42359 6.55127 6.68971 6.82732 6.85679 7.24048 7.26438 7.28988 7.42796 7.51250 7.70518 7.74585 7.89385 8.07010 8.51410 9.11686 9.69102 11.18425 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.048237 B = 0.004567 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.323215 B = 6129.596748 C = 6216.607318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 C -0.115 4.115 4 C 0.034 3.966 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.070 3.930 14 N -0.678 5.678 15 C 0.086 3.914 16 H 0.056 0.944 17 C -0.112 4.112 18 C -0.121 4.121 19 C -0.150 4.150 20 C 0.096 3.904 21 H 0.062 0.938 22 O -0.567 6.567 23 H 0.064 0.936 24 H 0.032 0.968 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.012 0.988 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.066 0.934 33 H 0.024 0.976 34 H 0.337 0.663 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.107 3.408 -18.556 18.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.058 4.058 14 N -0.311 5.311 15 C -0.024 4.024 16 H 0.074 0.926 17 C -0.150 4.150 18 C -0.159 4.159 19 C -0.188 4.188 20 C 0.037 3.963 21 H 0.080 0.920 22 O -0.372 6.372 23 H 0.083 0.917 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.157 0.843 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.158 3.481 -17.938 18.310 hybrid contribution -1.174 -0.201 0.528 1.302 sum -2.332 3.281 -17.410 17.869 Atomic orbital electron populations 1.21768 0.96133 1.00389 1.00327 1.20632 0.94696 0.96130 0.94433 1.21594 0.99763 0.95800 1.00101 1.19121 0.96115 0.94993 0.90155 1.21202 1.30825 1.11884 0.90633 0.92363 1.25011 0.95414 0.95114 0.99021 1.69955 1.37244 1.23209 1.23369 0.86728 0.79133 0.79823 0.82717 1.20378 1.21450 1.20319 1.22153 0.99833 0.94669 0.89158 1.60822 1.16125 1.53268 1.00878 1.22084 0.93936 0.97408 0.88958 0.92617 1.22409 0.95646 1.02387 0.94569 1.22441 0.96010 1.01054 0.96401 1.22997 0.96670 1.00676 0.98489 1.22643 0.94983 0.85323 0.93373 0.91988 1.86559 1.65908 1.32099 1.52662 0.91722 0.94893 0.94091 0.94183 0.93940 0.92730 0.96920 0.96672 0.93123 0.91526 0.95797 0.84280 0.90024 0.91767 0.91578 0.91589 0.90688 0.91489 0.77847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 7.89 37.16 0.29 -2.15 16 2 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 3 C -0.12 -2.25 8.06 37.16 0.30 -1.95 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -14.02 7.65 -34.44 -0.26 -14.28 16 6 H 0.06 1.56 5.68 -52.48 -0.30 1.26 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 9 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.07 1.26 4.47 -3.83 -0.02 1.25 16 14 N -0.68 -10.15 5.47 -105.55 -0.58 -10.73 16 15 C 0.09 1.17 3.05 -66.59 -0.20 0.96 16 16 H 0.06 0.86 7.64 -51.93 -0.40 0.47 16 17 C -0.11 -1.37 6.43 -25.07 -0.16 -1.53 16 18 C -0.12 -1.22 6.91 -24.74 -0.17 -1.39 16 19 C -0.15 -1.40 6.56 -25.07 -0.16 -1.56 16 20 C 0.10 1.07 3.94 -25.61 -0.10 0.97 16 21 H 0.06 0.67 7.49 -51.93 -0.39 0.28 16 22 O -0.57 -6.38 13.21 -35.23 -0.47 -6.85 16 23 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 24 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.74 7.60 -51.93 -0.39 0.35 16 28 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.07 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.02 0.45 8.07 -51.93 -0.42 0.03 16 34 H 0.34 4.90 6.09 -39.29 -0.24 4.66 16 35 H 0.08 1.06 8.05 -51.92 -0.42 0.64 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.53 8.06 -51.93 -0.42 0.11 16 41 H 0.37 2.47 9.11 45.56 0.41 2.89 16 LS Contribution 317.04 15.07 4.78 4.78 Total: -1.00 -30.35 317.04 -7.87 -38.22 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.52 Total: 2.98 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -0.79 Total: -18.74 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.16 Total: -37.12 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.47 Total: -6.85 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.35 -7.87 -38.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323167723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.627 kcal (2) G-P(sol) polarization free energy of solvation -30.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds