Wall clock time and date at job start Sun Mar 29 2020 22:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 5 5 C 1.50698 * 109.47184 * 300.00333 * 4 2 1 6 6 H 1.08005 * 119.99819 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00046 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99979 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47454 * 59.99696 * 9 7 5 11 11 H 1.48506 * 109.47297 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47261 * 299.99689 * 9 7 5 13 13 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 14 14 N 1.46896 * 109.47114 * 60.00200 * 13 2 1 15 15 C 1.46904 * 111.00095 * 180.02562 * 14 13 2 16 16 H 1.08995 * 110.01552 * 34.93523 * 15 14 13 17 17 C 1.54268 * 110.02961 * 273.54509 * 15 14 13 18 18 C 1.54884 * 104.19447 * 217.10768 * 17 15 14 19 19 C 1.54889 * 102.75143 * 37.94175 * 18 17 15 20 20 C 1.53872 * 110.03176 * 156.37782 * 15 14 13 21 21 H 1.08996 * 110.03901 * 359.97438 * 20 15 14 22 22 O 1.42901 * 110.03161 * 238.56443 * 20 15 14 23 23 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 24 24 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 25 25 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 28 28 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 29 29 H 1.09001 * 109.47002 * 59.99738 * 4 2 1 30 30 H 1.08993 * 109.46955 * 180.02562 * 4 2 1 31 31 H 0.96996 * 120.00505 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.46952 * 180.02562 * 13 2 1 33 33 H 1.09001 * 109.46832 * 300.00199 * 13 2 1 34 34 H 1.00907 * 110.99931 * 303.95289 * 14 13 2 35 35 H 1.09010 * 110.48318 * 335.77897 * 17 15 14 36 36 H 1.08996 * 110.48727 * 98.41984 * 17 15 14 37 37 H 1.09005 * 110.75616 * 156.26068 * 18 17 15 38 38 H 1.09002 * 110.75260 * 279.62441 * 18 17 15 39 39 H 1.08996 * 110.48898 * 80.73973 * 19 18 17 40 40 H 1.09005 * 110.48377 * 203.38168 * 19 18 17 41 41 H 0.96702 * 114.00129 * 180.02562 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.5376 -0.0107 2.4797 6 1 0.9170 0.8676 2.3806 7 6 1.8711 -0.4814 3.7320 8 7 2.6273 -1.5506 3.8528 9 14 1.2490 0.3997 5.2572 10 1 -0.2360 0.3998 5.2577 11 1 1.7439 -0.3003 6.4698 12 1 1.7440 1.7998 5.2566 13 6 2.0400 -0.7213 -1.2492 14 7 1.5504 -0.0289 -2.4486 15 6 2.0209 -0.6955 -3.6702 16 1 2.0644 -1.7733 -3.5140 17 6 3.4147 -0.1613 -4.0602 18 6 3.3834 -0.1130 -5.6080 19 6 1.9362 0.3515 -5.9064 20 6 1.0809 -0.3694 -4.8440 21 1 0.2753 0.2830 -4.5073 22 8 0.5397 -1.5753 -5.3872 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6766 -1.7488 1.2494 30 1 3.1299 -0.7208 1.2495 31 1 2.8622 -1.8815 4.7338 32 1 3.1300 -0.7217 -1.2489 33 1 1.6766 -1.7490 -1.2491 34 1 0.5438 0.0412 -2.4401 35 1 3.5690 0.8370 -3.6504 36 1 4.1939 -0.8409 -3.7153 37 1 4.1068 0.6093 -5.9866 38 1 3.5664 -1.1016 -6.0291 39 1 1.8518 1.4325 -5.7948 40 1 1.6366 0.0460 -6.9089 41 1 -0.0614 -1.4362 -6.1319 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000323167723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:02 Heat of formation + Delta-G solvation = -98.927143 kcal Electronic energy + Delta-G solvation = -18080.185881 eV Core-core repulsion = 15378.789253 eV Total energy + Delta-G solvation = -2701.396628 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.26228 -38.69349 -36.16671 -34.87413 -33.60528 -29.25344 -28.74020 -28.10977 -27.88200 -26.13288 -24.10023 -21.83926 -20.97032 -19.52875 -18.34400 -18.00796 -16.91909 -16.53239 -16.44193 -16.21048 -15.29835 -15.15239 -14.75562 -14.22538 -14.09963 -13.88357 -13.49848 -13.42327 -12.94631 -12.80317 -12.70940 -12.59285 -12.35188 -12.25618 -12.09936 -11.98255 -11.84543 -11.64375 -11.45583 -11.37732 -10.90464 -10.82306 -10.70797 -10.50134 -9.39024 -8.13641 -6.21262 1.41220 1.43816 1.51092 2.44060 2.98882 3.20099 3.46378 3.62012 3.91574 4.07572 4.12882 4.20029 4.36245 4.44712 4.49813 4.54246 4.71993 4.76731 4.79483 4.85872 4.94998 5.01949 5.06445 5.08852 5.15774 5.19255 5.21192 5.24349 5.46358 5.50810 5.52924 5.58102 5.65187 5.86321 5.92059 6.07801 6.35995 6.46762 6.92354 6.93572 7.46189 8.98732 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.048237 B = 0.004567 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.323215 B = 6129.596748 C = 6216.607318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.055 4.055 3 C -0.105 4.105 4 C 0.039 3.961 5 C -0.515 4.515 6 H 0.068 0.932 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.267 1.267 13 C 0.084 3.916 14 N -0.667 5.667 15 C 0.080 3.920 16 H 0.031 0.969 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.143 4.143 20 C 0.099 3.901 21 H 0.071 0.929 22 O -0.586 6.586 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.040 0.960 29 H -0.019 1.019 30 H -0.017 1.017 31 H 0.260 0.740 32 H 0.055 0.945 33 H 0.010 0.990 34 H 0.343 0.657 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.325 5.221 -20.095 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.055 4.055 3 C -0.163 4.163 4 C 0.002 3.998 5 C -0.553 4.553 6 H 0.086 0.914 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.192 1.192 13 C -0.045 4.045 14 N -0.300 5.300 15 C -0.030 4.030 16 H 0.049 0.951 17 C -0.152 4.152 18 C -0.155 4.155 19 C -0.180 4.180 20 C 0.040 3.960 21 H 0.088 0.912 22 O -0.395 6.395 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.059 0.941 29 H -0.001 1.001 30 H 0.002 0.998 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.028 0.972 34 H 0.163 0.837 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.397 5.310 -19.510 20.361 hybrid contribution -0.774 -0.825 0.959 1.483 sum -3.171 4.485 -18.551 19.347 Atomic orbital electron populations 1.21685 0.94638 1.00278 1.01339 1.20498 0.95849 0.96282 0.92908 1.21492 0.99136 0.94953 1.00681 1.19011 0.94052 0.93909 0.92858 1.21585 1.30388 1.11977 0.91366 0.91436 1.25943 0.95657 0.95881 1.02651 1.70109 1.38824 1.25005 1.24112 0.85606 0.78945 0.78794 0.78351 1.19226 1.21381 1.19201 1.21839 0.99101 0.93874 0.89718 1.60777 1.16410 1.52570 1.00263 1.22187 0.95607 0.95877 0.89318 0.95092 1.22398 0.94561 1.01603 0.96606 1.22433 0.97268 1.01542 0.94262 1.22973 0.95299 1.00948 0.98816 1.22554 0.94989 0.85469 0.92990 0.91153 1.86511 1.66681 1.32396 1.53867 0.93167 0.91305 0.94803 0.95103 0.91169 0.94115 1.00084 0.99814 0.93163 0.92605 0.97216 0.83705 0.90518 0.92816 0.90022 0.91804 0.89714 0.89486 0.75434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 7.89 71.98 0.57 -3.94 16 2 C -0.05 -2.24 0.60 -52.18 -0.03 -2.27 16 3 C -0.11 -4.03 8.06 71.98 0.58 -3.45 16 4 C 0.04 2.09 4.04 29.85 0.12 2.21 16 5 C -0.52 -28.91 7.65 25.60 0.20 -28.71 16 6 H 0.07 3.60 5.68 -2.91 -0.02 3.59 16 7 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 8 N -0.94 -58.34 13.29 21.45 0.28 -58.05 16 9 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 C 0.08 3.06 4.47 86.30 0.39 3.44 16 14 N -0.67 -19.14 5.47 -487.85 -2.67 -21.81 16 15 C 0.08 2.09 3.05 45.64 0.14 2.23 16 16 H 0.03 0.97 7.64 -2.39 -0.02 0.95 16 17 C -0.11 -2.67 6.43 31.67 0.20 -2.47 16 18 C -0.12 -2.08 6.91 31.88 0.22 -1.86 16 19 C -0.14 -2.18 6.56 31.67 0.21 -1.97 16 20 C 0.10 1.97 3.94 31.32 0.12 2.09 16 21 H 0.07 1.29 7.49 -2.39 -0.02 1.27 16 22 O -0.59 -11.91 13.21 -148.98 -1.97 -13.88 16 23 H 0.05 1.99 6.62 -2.39 -0.02 1.97 16 24 H 0.07 2.03 6.57 -2.39 -0.02 2.02 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 2.28 7.60 -2.39 -0.02 2.27 16 28 H 0.04 1.65 6.62 -2.39 -0.02 1.63 16 29 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 30 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 31 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.06 2.14 8.10 -2.39 -0.02 2.12 16 33 H 0.01 0.38 8.07 -2.39 -0.02 0.36 16 34 H 0.34 9.18 6.09 -89.69 -0.55 8.63 16 35 H 0.08 1.89 8.05 -2.38 -0.02 1.87 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.09 1.02 8.06 -2.38 -0.02 1.00 16 41 H 0.40 4.10 9.11 -74.06 -0.67 3.43 16 Total: -1.00 -66.50 317.04 0.63 -65.87 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -0.22 Total: 15.56 kcal Atomic # 6 Polarization: -37.68 SS G_CDS: 3.18 Total: -34.51 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -2.38 Total: -79.86 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -1.97 Total: -13.88 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -66.50 0.63 -65.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000323167723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.055 kcal (2) G-P(sol) polarization free energy of solvation -66.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds