Wall clock time and date at job start Sun Mar 29 2020 22:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 O 1.42900 * 109.52245 * 64.87075 * 3 2 1 5 5 C 1.53119 * 109.51885 * 304.67956 * 3 2 1 6 6 C 1.53036 * 109.27619 * 182.44047 * 5 3 2 7 7 N 1.46850 * 109.52283 * 59.18344 * 6 5 3 8 8 C 1.46901 * 111.00077 * 174.16068 * 7 6 5 9 9 C 1.52992 * 109.47145 * 294.20761 * 8 7 6 10 10 C 1.53000 * 109.47441 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47280 * 180.02562 * 10 9 8 12 12 H 1.07993 * 119.99948 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99935 * 180.02562 * 11 10 9 14 14 N 1.31521 * 119.99958 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00174 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47308 * 89.99617 * 15 13 11 17 17 H 1.48496 * 109.47065 * 209.99751 * 15 13 11 18 18 H 1.48502 * 109.46711 * 329.99862 * 15 13 11 19 19 C 1.46852 * 111.19451 * 298.25471 * 7 6 5 20 20 C 1.53033 * 109.52383 * 61.74547 * 19 7 6 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 25 25 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 26 26 H 0.96700 * 114.00009 * 300.00059 * 4 3 2 27 27 H 1.08997 * 109.50708 * 302.37906 * 5 3 2 28 28 H 1.08995 * 109.50206 * 62.50280 * 5 3 2 29 29 H 1.08997 * 109.46529 * 299.16616 * 6 5 3 30 30 H 1.08997 * 109.46598 * 179.19457 * 6 5 3 31 31 H 1.09004 * 109.46982 * 54.20616 * 8 7 6 32 32 H 1.08998 * 109.47380 * 174.20150 * 8 7 6 33 33 H 1.08996 * 109.47169 * 300.00126 * 9 8 7 34 34 H 1.09004 * 109.47486 * 60.00175 * 9 8 7 35 35 H 1.08996 * 109.47137 * 300.00261 * 10 9 8 36 36 H 1.09001 * 109.47170 * 60.00120 * 10 9 8 37 37 H 0.96997 * 119.99971 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.46115 * 301.72471 * 19 7 6 39 39 H 1.09000 * 109.46127 * 181.76030 * 19 7 6 40 40 H 1.08998 * 109.50400 * 180.87890 * 20 19 7 41 41 H 1.08996 * 109.50274 * 60.75714 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 1.6599 2.0834 1.2194 5 6 1.4363 2.1986 -1.1868 6 6 1.9970 3.6223 -1.2168 7 7 3.4595 3.5713 -1.3387 8 6 4.0208 4.9180 -1.5097 9 6 3.5585 5.4970 -2.8483 10 6 4.1426 6.8999 -3.0261 11 6 3.6867 7.4705 -4.3444 12 1 3.0443 6.8907 -4.9904 13 6 4.0898 8.7327 -4.7255 14 7 4.8717 9.4390 -3.9385 15 14 3.5241 9.4403 -6.3592 16 1 2.2492 10.1764 -6.1650 17 1 4.5580 10.3700 -6.8805 18 1 3.3155 8.3368 -7.3308 19 6 4.0649 2.8912 -0.1865 20 6 3.5661 1.4457 -0.1257 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 0.7044 2.1191 1.3637 27 1 1.6941 1.6864 -2.1138 28 1 0.3522 2.2366 -1.0806 29 1 1.7271 4.1384 -0.2955 30 1 1.5801 4.1589 -2.0690 31 1 3.6781 5.5602 -0.6983 32 1 5.1093 4.8627 -1.4942 33 1 3.9011 4.8549 -3.6596 34 1 2.4700 5.5525 -2.8637 35 1 3.7996 7.5418 -2.2148 36 1 5.2311 6.8450 -3.0106 37 1 5.1550 10.3271 -4.2065 38 1 3.7853 3.4108 0.7299 39 1 5.1499 2.8968 -0.2905 40 1 4.0034 0.9459 0.7385 41 1 3.8573 0.9217 -1.0360 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336643722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:13 Heat of formation + Delta-G solvation = -76.422440 kcal Electronic energy + Delta-G solvation = -17916.677987 eV Core-core repulsion = 15216.257235 eV Total energy + Delta-G solvation = -2700.420751 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.86989 -36.82686 -33.90431 -33.16839 -31.91712 -30.77711 -29.86942 -26.51062 -24.59202 -23.39312 -22.30766 -21.00352 -19.80722 -19.71347 -16.59271 -16.40880 -15.89377 -15.14747 -14.67927 -14.46098 -14.40679 -14.14626 -13.88387 -13.62886 -12.78432 -12.46272 -12.33022 -12.09056 -12.02335 -11.74272 -11.38712 -11.24638 -11.13290 -11.08818 -11.05910 -10.75040 -10.53066 -10.45198 -10.11327 -9.78910 -9.48452 -9.26752 -8.99529 -8.30035 -7.92736 -5.95469 -3.97365 3.34744 3.40705 3.44597 4.06965 4.29141 4.50306 4.53630 4.64131 4.74366 4.97285 5.17035 5.26088 5.31545 5.40199 5.51479 5.57014 5.60591 5.68016 5.73815 5.75771 5.86615 5.90887 5.95528 6.01754 6.11909 6.17095 6.21791 6.33771 6.40400 6.78307 6.85733 7.19468 7.48561 7.51294 7.56661 7.73903 7.89624 8.05585 8.49037 9.09993 9.66323 11.16053 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.046554 B = 0.004101 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.311200 B = 6826.026222 C = 7149.393120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.149 4.149 3 C 0.131 3.869 4 O -0.557 6.557 5 C -0.141 4.141 6 C 0.056 3.944 7 N -0.539 5.539 8 C 0.057 3.943 9 C -0.104 4.104 10 C 0.021 3.979 11 C -0.517 4.517 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.057 3.943 20 C -0.099 4.099 21 H 0.056 0.944 22 H 0.061 0.939 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.370 0.630 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.013 0.987 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.113 -18.263 9.100 21.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.187 4.187 3 C 0.090 3.910 4 O -0.363 6.363 5 C -0.179 4.179 6 C -0.072 4.072 7 N -0.264 5.264 8 C -0.070 4.070 9 C -0.142 4.142 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.071 4.071 20 C -0.137 4.137 21 H 0.075 0.925 22 H 0.080 0.920 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.217 0.783 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.251 -18.307 8.754 21.233 hybrid contribution -1.075 0.895 -0.225 1.417 sum -7.326 -17.412 8.528 20.726 Atomic orbital electron populations 1.21864 0.95793 1.01994 1.01955 1.22193 0.96350 0.97310 1.02802 1.21291 0.95290 0.90319 0.84074 1.86560 1.27879 1.81237 1.40659 1.22310 0.99558 0.96901 0.99095 1.22028 0.88490 0.95803 1.00886 1.62035 1.04577 1.19853 1.39896 1.22257 0.99289 0.86690 0.98772 1.21649 0.99621 0.98823 0.94108 1.19079 0.96152 0.89741 0.96677 1.21260 1.29965 1.00399 1.03936 0.92710 1.25034 0.95218 0.97168 0.97130 1.69972 1.35287 1.11426 1.36969 0.86601 0.78321 0.78972 0.84154 1.20731 1.21255 1.19861 1.21977 0.98850 0.93946 0.92359 1.21570 0.92488 0.97478 1.02163 0.92538 0.91986 0.92804 0.91396 0.90974 0.78263 0.90328 0.91380 0.94748 0.90119 0.95455 0.91320 0.92670 0.93557 0.96860 0.96610 0.93074 0.94405 0.91097 0.91329 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.22 37.16 0.34 -0.78 16 2 C -0.15 -1.25 5.23 -26.73 -0.14 -1.39 16 3 C 0.13 1.38 0.74 -90.49 -0.07 1.31 16 4 O -0.56 -6.27 11.84 -35.23 -0.42 -6.68 16 5 C -0.14 -1.59 4.51 -26.65 -0.12 -1.71 16 6 C 0.06 0.81 5.16 -3.83 -0.02 0.80 16 7 N -0.54 -8.58 4.66 -234.67 -1.09 -9.68 16 8 C 0.06 1.06 4.96 -3.83 -0.02 1.04 16 9 C -0.10 -2.25 5.08 -26.74 -0.14 -2.38 16 10 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 11 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 12 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 15 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.06 0.79 5.33 -3.83 -0.02 0.77 16 20 C -0.10 -1.14 5.11 -26.65 -0.14 -1.28 16 21 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.06 0.44 6.41 -51.93 -0.33 0.11 16 23 H 0.05 0.34 6.89 -51.93 -0.36 -0.02 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.37 2.99 7.53 45.56 0.34 3.34 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.65 6.51 -51.93 -0.34 0.32 16 29 H 0.03 0.52 7.76 -51.93 -0.40 0.12 16 30 H 0.08 1.26 6.21 -51.93 -0.32 0.94 16 31 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.07 1.26 7.99 -51.93 -0.41 0.85 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.98 6.43 -51.93 -0.33 0.65 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.04 0.57 7.76 -51.93 -0.40 0.17 16 39 H 0.07 0.95 8.02 -51.93 -0.42 0.54 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 314.48 15.07 4.74 4.74 Total: -1.00 -31.30 314.48 -8.67 -39.96 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.75 Total: -1.56 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -0.87 Total: -17.01 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -0.36 Total: -36.45 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.42 Total: -6.68 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.30 -8.67 -39.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336643722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.458 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds