Wall clock time and date at job start Sun Mar 29 2020 22:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 O 1.42900 * 109.52245 * 64.87075 * 3 2 1 5 5 C 1.53119 * 109.51885 * 304.67956 * 3 2 1 6 6 C 1.53036 * 109.27619 * 182.44047 * 5 3 2 7 7 N 1.46850 * 109.52283 * 59.18344 * 6 5 3 8 8 C 1.46901 * 111.00077 * 174.16068 * 7 6 5 9 9 C 1.52992 * 109.47145 * 294.20761 * 8 7 6 10 10 C 1.53000 * 109.47441 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47280 * 180.02562 * 10 9 8 12 12 H 1.07993 * 119.99948 * 0.02562 * 11 10 9 13 13 C 1.37877 * 119.99935 * 180.02562 * 11 10 9 14 14 N 1.31521 * 119.99958 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 120.00174 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47308 * 89.99617 * 15 13 11 17 17 H 1.48496 * 109.47065 * 209.99751 * 15 13 11 18 18 H 1.48502 * 109.46711 * 329.99862 * 15 13 11 19 19 C 1.46852 * 111.19451 * 298.25471 * 7 6 5 20 20 C 1.53033 * 109.52383 * 61.74547 * 19 7 6 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 25 25 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 26 26 H 0.96700 * 114.00009 * 300.00059 * 4 3 2 27 27 H 1.08997 * 109.50708 * 302.37906 * 5 3 2 28 28 H 1.08995 * 109.50206 * 62.50280 * 5 3 2 29 29 H 1.08997 * 109.46529 * 299.16616 * 6 5 3 30 30 H 1.08997 * 109.46598 * 179.19457 * 6 5 3 31 31 H 1.09004 * 109.46982 * 54.20616 * 8 7 6 32 32 H 1.08998 * 109.47380 * 174.20150 * 8 7 6 33 33 H 1.08996 * 109.47169 * 300.00126 * 9 8 7 34 34 H 1.09004 * 109.47486 * 60.00175 * 9 8 7 35 35 H 1.08996 * 109.47137 * 300.00261 * 10 9 8 36 36 H 1.09001 * 109.47170 * 60.00120 * 10 9 8 37 37 H 0.96997 * 119.99971 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.46115 * 301.72471 * 19 7 6 39 39 H 1.09000 * 109.46127 * 181.76030 * 19 7 6 40 40 H 1.08998 * 109.50400 * 180.87890 * 20 19 7 41 41 H 1.08996 * 109.50274 * 60.75714 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 1.6599 2.0834 1.2194 5 6 1.4363 2.1986 -1.1868 6 6 1.9970 3.6223 -1.2168 7 7 3.4595 3.5713 -1.3387 8 6 4.0208 4.9180 -1.5097 9 6 3.5585 5.4970 -2.8483 10 6 4.1426 6.8999 -3.0261 11 6 3.6867 7.4705 -4.3444 12 1 3.0443 6.8907 -4.9904 13 6 4.0898 8.7327 -4.7255 14 7 4.8717 9.4390 -3.9385 15 14 3.5241 9.4403 -6.3592 16 1 2.2492 10.1764 -6.1650 17 1 4.5580 10.3700 -6.8805 18 1 3.3155 8.3368 -7.3308 19 6 4.0649 2.8912 -0.1865 20 6 3.5661 1.4457 -0.1257 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 0.7044 2.1191 1.3637 27 1 1.6941 1.6864 -2.1138 28 1 0.3522 2.2366 -1.0806 29 1 1.7271 4.1384 -0.2955 30 1 1.5801 4.1589 -2.0690 31 1 3.6781 5.5602 -0.6983 32 1 5.1093 4.8627 -1.4942 33 1 3.9011 4.8549 -3.6596 34 1 2.4700 5.5525 -2.8637 35 1 3.7996 7.5418 -2.2148 36 1 5.2311 6.8450 -3.0106 37 1 5.1550 10.3271 -4.2065 38 1 3.7853 3.4108 0.7299 39 1 5.1499 2.8968 -0.2905 40 1 4.0034 0.9459 0.7385 41 1 3.8573 0.9217 -1.0360 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336643722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:13 Heat of formation + Delta-G solvation = -97.777034 kcal Electronic energy + Delta-G solvation = -17917.603991 eV Core-core repulsion = 15216.257235 eV Total energy + Delta-G solvation = -2701.346756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.84301 -38.03043 -35.76047 -34.19411 -33.47230 -31.88641 -31.15778 -28.20933 -25.84973 -24.55145 -23.86332 -22.03192 -21.49932 -20.69281 -18.50504 -17.46310 -17.11157 -16.50718 -16.34267 -15.68102 -15.45208 -15.29824 -15.14120 -14.73974 -14.29652 -13.77104 -13.61991 -13.35599 -13.23401 -12.88226 -12.80180 -12.59277 -12.49756 -12.38179 -12.18858 -12.11378 -11.99700 -11.80283 -11.45144 -11.38738 -11.12427 -10.97550 -10.58319 -10.51598 -9.24446 -8.20236 -6.31675 1.39880 1.41766 1.53179 2.41007 2.95010 3.12693 3.38247 3.72435 3.81817 3.88568 4.09949 4.25095 4.33482 4.35030 4.47575 4.53809 4.58417 4.61876 4.66869 4.70615 4.88526 4.96199 4.98145 5.02076 5.04246 5.10840 5.12894 5.17871 5.20973 5.28911 5.37342 5.48310 5.51607 5.73305 5.84952 6.11095 6.22928 6.27704 6.85008 6.88535 7.37602 8.91920 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.046554 B = 0.004101 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.311200 B = 6826.026222 C = 7149.393120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.142 4.142 3 C 0.132 3.868 4 O -0.573 6.573 5 C -0.133 4.133 6 C 0.053 3.947 7 N -0.540 5.540 8 C 0.067 3.933 9 C -0.087 4.087 10 C 0.025 3.975 11 C -0.543 4.543 12 H 0.060 0.940 13 C -0.002 4.002 14 N -0.935 5.935 15 Si 0.968 3.032 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.262 1.262 19 C 0.056 3.944 20 C -0.099 4.099 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.383 0.617 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.025 0.975 30 H 0.066 0.934 31 H 0.017 0.983 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.049 0.951 35 H -0.012 1.012 36 H -0.008 1.008 37 H 0.264 0.736 38 H 0.024 0.976 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.355 -19.781 8.502 23.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.179 4.179 3 C 0.092 3.908 4 O -0.382 6.382 5 C -0.171 4.171 6 C -0.075 4.075 7 N -0.265 5.265 8 C -0.061 4.061 9 C -0.125 4.125 10 C -0.012 4.012 11 C -0.581 4.581 12 H 0.078 0.922 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.792 3.208 16 H -0.197 1.197 17 H -0.206 1.206 18 H -0.187 1.187 19 C -0.072 4.072 20 C -0.136 4.136 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.233 0.767 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.035 0.965 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.006 0.994 36 H 0.010 0.990 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.511 -19.849 8.166 22.739 hybrid contribution -0.670 1.382 0.019 1.536 sum -8.182 -18.467 8.185 21.794 Atomic orbital electron populations 1.21867 0.94688 1.02709 1.02298 1.22110 0.97271 0.95420 1.03126 1.21279 0.94528 0.91566 0.83459 1.86532 1.29313 1.81514 1.40821 1.22288 1.00684 0.94522 0.99634 1.22085 0.87584 0.98062 0.99733 1.62026 1.05524 1.17822 1.41115 1.21999 0.99243 0.88210 0.96606 1.21382 0.99405 0.95876 0.95816 1.18978 0.94730 0.92262 0.95266 1.21681 1.30356 1.01125 1.04893 0.92204 1.26021 0.95070 0.97533 1.01335 1.70108 1.36333 1.11929 1.39149 0.85411 0.78065 0.78323 0.79038 1.19690 1.20641 1.18655 1.22040 0.99044 0.95292 0.90786 1.21598 0.93510 0.95476 1.03042 0.91690 0.92016 0.92096 0.91212 0.90514 0.76736 0.90258 0.89352 0.95675 0.91513 0.96477 0.91456 0.92814 0.93227 0.99390 0.98985 0.92747 0.95741 0.90858 0.90203 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.22 71.98 0.66 -1.11 16 2 C -0.14 -1.98 5.23 30.60 0.16 -1.82 16 3 C 0.13 2.50 0.74 -10.71 -0.01 2.49 16 4 O -0.57 -11.86 11.84 -148.98 -1.76 -13.63 16 5 C -0.13 -2.76 4.51 30.65 0.14 -2.63 16 6 C 0.05 1.52 5.16 86.32 0.45 1.97 16 7 N -0.54 -17.04 4.66 -896.37 -4.17 -21.21 16 8 C 0.07 2.54 4.96 86.30 0.43 2.97 16 9 C -0.09 -3.82 5.08 30.59 0.16 -3.66 16 10 C 0.03 1.39 4.97 29.85 0.15 1.54 16 11 C -0.54 -31.93 9.11 25.60 0.23 -31.70 16 12 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 13 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 14 N -0.93 -58.27 13.29 21.45 0.28 -57.98 16 15 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 16 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 18 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 19 C 0.06 1.53 5.33 86.32 0.46 1.99 16 20 C -0.10 -2.10 5.11 30.65 0.16 -1.94 16 21 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 22 H 0.06 0.70 6.41 -2.39 -0.02 0.68 16 23 H 0.06 0.59 6.89 -2.38 -0.02 0.58 16 24 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.38 5.40 7.53 -74.06 -0.56 4.84 16 27 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.09 1.48 6.51 -2.39 -0.02 1.46 16 29 H 0.02 0.76 7.76 -2.39 -0.02 0.74 16 30 H 0.07 2.07 6.21 -2.39 -0.01 2.05 16 31 H 0.02 0.67 8.12 -2.38 -0.02 0.65 16 32 H 0.07 2.53 7.99 -2.39 -0.02 2.51 16 33 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.05 2.13 6.43 -2.39 -0.02 2.11 16 35 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 36 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.02 0.73 7.76 -2.39 -0.02 0.71 16 39 H 0.07 1.93 8.02 -2.39 -0.02 1.92 16 40 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.18 314.48 0.24 -66.94 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.42 Total: 10.33 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 3.44 Total: -31.55 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -3.89 Total: -79.20 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -1.76 Total: -13.63 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -67.18 0.24 -66.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336643722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.841 kcal (2) G-P(sol) polarization free energy of solvation -67.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds