Wall clock time and date at job start Sun Mar 29 2020 22:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47597 * 2 1 4 4 C 1.52999 * 109.54096 * 59.89165 * 3 2 1 5 5 C 1.53099 * 109.50213 * 299.78172 * 3 2 1 6 6 O 1.43020 * 109.25597 * 183.21650 * 5 3 2 7 7 C 1.43013 * 113.73804 * 58.66814 * 6 5 3 8 8 C 1.53093 * 109.26266 * 301.32981 * 7 6 5 9 9 N 1.47012 * 109.50838 * 179.97438 * 3 2 1 10 10 C 1.46897 * 111.00349 * 302.32648 * 9 3 2 11 11 C 1.52993 * 109.47445 * 172.81442 * 10 9 3 12 12 C 1.52999 * 109.47281 * 185.22193 * 11 10 9 13 13 C 1.50698 * 109.47328 * 180.02562 * 12 11 10 14 14 H 1.08011 * 120.00122 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00430 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99675 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00184 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47083 * 90.00308 * 17 15 13 19 19 H 1.48498 * 109.46893 * 210.00083 * 17 15 13 20 20 H 1.48501 * 109.47216 * 329.99907 * 17 15 13 21 21 H 1.09007 * 109.46820 * 300.00272 * 1 2 3 22 22 H 1.08992 * 109.47056 * 59.99912 * 1 2 3 23 23 H 1.08999 * 109.47505 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46919 * 239.99428 * 2 1 3 25 25 H 1.09008 * 109.47040 * 120.00451 * 2 1 3 26 26 H 1.09000 * 109.46840 * 177.28515 * 4 3 2 27 27 H 1.09000 * 109.47266 * 297.27739 * 4 3 2 28 28 H 1.08992 * 109.47481 * 57.27977 * 4 3 2 29 29 H 1.09003 * 109.50622 * 63.28503 * 5 3 2 30 30 H 1.08996 * 109.54560 * 303.16998 * 5 3 2 31 31 H 1.09005 * 109.50367 * 181.39406 * 7 6 5 32 32 H 1.08999 * 109.53937 * 61.29295 * 7 6 5 33 33 H 1.08994 * 109.50861 * 296.91569 * 8 7 6 34 34 H 1.08995 * 109.50896 * 176.78465 * 8 7 6 35 35 H 1.09001 * 109.47322 * 52.81519 * 10 9 3 36 36 H 1.08999 * 109.47329 * 292.82021 * 10 9 3 37 37 H 1.08996 * 109.47756 * 305.22365 * 11 10 9 38 38 H 1.09006 * 109.47126 * 65.22203 * 11 10 9 39 39 H 1.09005 * 109.47212 * 300.00008 * 12 11 10 40 40 H 1.08995 * 109.47353 * 60.00328 * 12 11 10 41 41 H 0.96996 * 119.99788 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5288 2.1660 1.2473 5 6 1.5347 2.1633 -1.2526 6 8 2.0754 3.4869 -1.2855 7 6 3.5050 3.5249 -1.2870 8 6 4.0304 2.8179 -0.0348 9 7 3.5102 1.4433 0.0006 10 6 4.0366 0.7104 1.1598 11 6 5.5556 0.5784 1.0329 12 6 6.0884 -0.2951 2.1704 13 6 7.5847 -0.4246 2.0458 14 1 8.1037 0.0667 1.2359 15 6 8.2911 -1.1711 2.9649 16 7 7.6590 -1.7706 3.9501 17 14 10.1456 -1.3321 2.8100 18 1 10.8026 -0.2361 3.5666 19 1 10.5765 -2.6418 3.3615 20 1 10.5321 -1.2465 1.3787 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.9320 3.1785 1.2709 27 1 0.4400 2.2092 1.2216 28 1 1.8501 1.6261 2.1380 29 1 0.4462 2.2153 -1.2283 30 1 1.8534 1.6178 -2.1408 31 1 3.8415 4.5618 -1.2877 32 1 3.8822 3.0193 -2.1759 33 1 3.6980 3.3554 0.8532 34 1 5.1198 2.7943 -0.0602 35 1 3.5876 -0.2821 1.1967 36 1 3.7941 1.2530 2.0735 37 1 5.8017 0.1186 0.0758 38 1 6.0121 1.5667 1.0892 39 1 5.8424 0.1648 3.1275 40 1 5.6320 -1.2833 2.1140 41 1 8.1558 -2.2960 4.5965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336648231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:42 Heat of formation + Delta-G solvation = -57.776944 kcal Electronic energy + Delta-G solvation = -18398.749009 eV Core-core repulsion = 15699.136787 eV Total energy + Delta-G solvation = -2699.612222 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.31394 -36.48661 -34.83780 -33.27468 -31.28196 -29.82125 -28.26404 -26.92659 -25.41884 -24.59459 -22.42289 -21.65873 -20.00135 -18.37087 -16.64602 -16.28569 -16.05360 -15.33331 -15.11219 -14.58391 -14.45551 -14.15088 -13.62374 -13.39737 -13.16021 -12.66970 -12.32424 -12.21363 -11.83669 -11.70315 -11.62061 -11.30763 -11.09329 -11.01683 -10.84425 -10.62527 -10.55274 -10.41740 -10.13978 -9.57912 -9.54048 -9.26173 -9.02073 -8.33268 -8.03871 -5.98657 -4.00641 3.32693 3.38840 3.42542 3.85345 3.98789 4.47623 4.72756 4.86549 5.00511 5.07736 5.19957 5.29875 5.34156 5.37276 5.40578 5.53963 5.63279 5.69697 5.71999 5.73886 5.87436 5.93772 5.96499 6.02243 6.04939 6.10944 6.20341 6.39419 6.40004 6.69019 6.80975 7.11591 7.14657 7.35947 7.37645 7.69390 7.84744 8.01760 8.45177 9.06472 9.63296 11.12839 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034395 B = 0.005048 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.869088 B = 5545.106923 C = 6065.611150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C 0.074 3.926 4 C -0.176 4.176 5 C 0.075 3.925 6 O -0.387 6.387 7 C 0.064 3.936 8 C 0.013 3.987 9 N -0.526 5.526 10 C 0.052 3.948 11 C -0.105 4.105 12 C 0.023 3.977 13 C -0.518 4.518 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.030 0.970 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.013 0.987 40 H 0.015 0.985 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.626 7.500 -8.830 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.017 4.017 4 C -0.235 4.235 5 C -0.002 4.002 6 O -0.306 6.306 7 C -0.013 4.013 8 C -0.116 4.116 9 N -0.250 5.250 10 C -0.075 4.075 11 C -0.143 4.143 12 C -0.015 4.015 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.076 0.924 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.031 0.969 40 H 0.034 0.966 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.543 7.312 -9.116 17.888 hybrid contribution 1.021 -0.009 0.889 1.354 sum -12.522 7.303 -8.227 16.667 Atomic orbital electron populations 1.21888 0.95753 1.01756 1.01771 1.21590 0.95299 0.94894 1.03391 1.21687 0.88730 0.95924 0.95316 1.22411 1.01463 1.01194 0.98400 1.22729 0.98112 0.83133 0.96200 1.87935 1.20504 1.27199 1.94916 1.22674 0.80746 1.00626 0.97280 1.22834 1.01519 0.89436 0.97765 1.62518 1.05296 1.13747 1.43429 1.22391 0.97738 0.97738 0.89645 1.21657 0.91120 1.00270 1.01226 1.19061 0.95549 0.94382 0.92501 1.21250 0.92618 1.30583 1.11178 0.92731 1.25026 0.98416 0.95661 0.95386 1.69966 1.35584 1.33174 1.14896 0.86602 0.85797 0.77371 0.78290 1.20712 1.21233 1.19860 0.92440 0.92719 0.92543 0.91032 0.90949 0.92062 0.92101 0.92252 0.88819 0.92581 0.88859 0.92448 0.93887 0.89003 0.90613 0.95183 0.92585 0.93674 0.96903 0.96621 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.21 37.16 0.34 -1.11 16 2 C -0.11 -1.36 4.71 -26.73 -0.13 -1.49 16 3 C 0.07 0.95 0.46 -131.49 -0.06 0.89 16 4 C -0.18 -2.22 7.20 37.16 0.27 -1.96 16 5 C 0.08 0.90 5.25 37.21 0.20 1.09 16 6 O -0.39 -5.14 10.33 -35.23 -0.36 -5.50 16 7 C 0.06 0.78 7.01 37.21 0.26 1.04 16 8 C 0.01 0.18 5.01 -3.71 -0.02 0.16 16 9 N -0.53 -7.96 4.51 -218.69 -0.99 -8.94 16 10 C 0.05 0.91 4.15 -3.83 -0.02 0.89 16 11 C -0.10 -2.19 4.87 -26.74 -0.13 -2.32 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 14 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 17 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H 0.06 0.53 6.50 -51.92 -0.34 0.19 16 22 H 0.05 0.46 6.51 -51.93 -0.34 0.12 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.96 6.22 -51.92 -0.32 0.63 16 26 H 0.06 0.82 6.00 -51.93 -0.31 0.51 16 27 H 0.06 0.67 6.58 -51.93 -0.34 0.32 16 28 H 0.06 0.80 6.77 -51.93 -0.35 0.45 16 29 H 0.09 0.95 6.62 -51.93 -0.34 0.61 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.62 6.33 -51.93 -0.33 0.29 16 34 H 0.09 1.34 6.40 -51.93 -0.33 1.01 16 35 H 0.08 1.34 5.89 -51.93 -0.31 1.03 16 36 H 0.03 0.54 6.82 -51.93 -0.35 0.18 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.04 0.93 6.70 -51.93 -0.35 0.58 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 304.92 15.07 4.60 4.60 Total: -1.00 -30.31 304.92 -7.81 -38.12 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -6.94 Total: -2.65 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 0.17 Total: -15.98 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.25 Total: -35.40 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -0.36 Total: -5.50 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.31 -7.81 -38.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336648231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.656 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds