Wall clock time and date at job start Sun Mar 29 2020 22:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47597 * 2 1 4 4 C 1.52999 * 109.54096 * 59.89165 * 3 2 1 5 5 C 1.53099 * 109.50213 * 299.78172 * 3 2 1 6 6 O 1.43020 * 109.25597 * 183.21650 * 5 3 2 7 7 C 1.43013 * 113.73804 * 58.66814 * 6 5 3 8 8 C 1.53093 * 109.26266 * 301.32981 * 7 6 5 9 9 N 1.47012 * 109.50838 * 179.97438 * 3 2 1 10 10 C 1.46897 * 111.00349 * 302.32648 * 9 3 2 11 11 C 1.52993 * 109.47445 * 172.81442 * 10 9 3 12 12 C 1.52999 * 109.47281 * 185.22193 * 11 10 9 13 13 C 1.50698 * 109.47328 * 180.02562 * 12 11 10 14 14 H 1.08011 * 120.00122 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00430 * 180.02562 * 13 12 11 16 16 N 1.31515 * 119.99675 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00184 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47083 * 90.00308 * 17 15 13 19 19 H 1.48498 * 109.46893 * 210.00083 * 17 15 13 20 20 H 1.48501 * 109.47216 * 329.99907 * 17 15 13 21 21 H 1.09007 * 109.46820 * 300.00272 * 1 2 3 22 22 H 1.08992 * 109.47056 * 59.99912 * 1 2 3 23 23 H 1.08999 * 109.47505 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46919 * 239.99428 * 2 1 3 25 25 H 1.09008 * 109.47040 * 120.00451 * 2 1 3 26 26 H 1.09000 * 109.46840 * 177.28515 * 4 3 2 27 27 H 1.09000 * 109.47266 * 297.27739 * 4 3 2 28 28 H 1.08992 * 109.47481 * 57.27977 * 4 3 2 29 29 H 1.09003 * 109.50622 * 63.28503 * 5 3 2 30 30 H 1.08996 * 109.54560 * 303.16998 * 5 3 2 31 31 H 1.09005 * 109.50367 * 181.39406 * 7 6 5 32 32 H 1.08999 * 109.53937 * 61.29295 * 7 6 5 33 33 H 1.08994 * 109.50861 * 296.91569 * 8 7 6 34 34 H 1.08995 * 109.50896 * 176.78465 * 8 7 6 35 35 H 1.09001 * 109.47322 * 52.81519 * 10 9 3 36 36 H 1.08999 * 109.47329 * 292.82021 * 10 9 3 37 37 H 1.08996 * 109.47756 * 305.22365 * 11 10 9 38 38 H 1.09006 * 109.47126 * 65.22203 * 11 10 9 39 39 H 1.09005 * 109.47212 * 300.00008 * 12 11 10 40 40 H 1.08995 * 109.47353 * 60.00328 * 12 11 10 41 41 H 0.96996 * 119.99788 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5288 2.1660 1.2473 5 6 1.5347 2.1633 -1.2526 6 8 2.0754 3.4869 -1.2855 7 6 3.5050 3.5249 -1.2870 8 6 4.0304 2.8179 -0.0348 9 7 3.5102 1.4433 0.0006 10 6 4.0366 0.7104 1.1598 11 6 5.5556 0.5784 1.0329 12 6 6.0884 -0.2951 2.1704 13 6 7.5847 -0.4246 2.0458 14 1 8.1037 0.0667 1.2359 15 6 8.2911 -1.1711 2.9649 16 7 7.6590 -1.7706 3.9501 17 14 10.1456 -1.3321 2.8100 18 1 10.8026 -0.2361 3.5666 19 1 10.5765 -2.6418 3.3615 20 1 10.5321 -1.2465 1.3787 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 1.9320 3.1785 1.2709 27 1 0.4400 2.2092 1.2216 28 1 1.8501 1.6261 2.1380 29 1 0.4462 2.2153 -1.2283 30 1 1.8534 1.6178 -2.1408 31 1 3.8415 4.5618 -1.2877 32 1 3.8822 3.0193 -2.1759 33 1 3.6980 3.3554 0.8532 34 1 5.1198 2.7943 -0.0602 35 1 3.5876 -0.2821 1.1967 36 1 3.7941 1.2530 2.0735 37 1 5.8017 0.1186 0.0758 38 1 6.0121 1.5667 1.0892 39 1 5.8424 0.1648 3.1275 40 1 5.6320 -1.2833 2.1140 41 1 8.1558 -2.2960 4.5965 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336648231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:42 Heat of formation + Delta-G solvation = -77.300736 kcal Electronic energy + Delta-G solvation = -18399.595624 eV Core-core repulsion = 15699.136787 eV Total energy + Delta-G solvation = -2700.458837 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.39579 -37.63564 -36.24059 -35.04019 -33.07690 -30.76123 -29.70494 -28.13219 -26.99421 -25.59158 -24.17537 -22.69242 -21.73381 -19.47617 -18.47130 -17.60342 -17.21675 -16.52432 -16.41259 -16.30640 -15.79609 -15.18542 -14.90005 -14.73398 -14.31410 -14.12662 -13.64807 -13.59246 -13.44289 -12.96990 -12.79857 -12.72808 -12.45067 -12.39944 -12.29603 -12.14302 -11.93363 -11.61875 -11.41756 -11.32829 -11.17930 -11.10912 -10.56381 -10.43562 -9.26509 -8.21167 -6.32339 1.39271 1.40765 1.52096 2.39990 2.77810 2.95228 3.12013 3.71495 3.87117 3.96750 4.03633 4.13054 4.25533 4.36405 4.39642 4.49032 4.52202 4.63560 4.64668 4.71539 4.74153 4.81128 4.84717 4.92746 4.94581 5.01320 5.09520 5.15349 5.20211 5.27754 5.33642 5.45639 5.50684 5.71573 5.84002 6.03641 6.11775 6.22596 6.26241 6.84243 7.36998 8.90876 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034395 B = 0.005048 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.869088 B = 5545.106923 C = 6065.611150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C 0.071 3.929 4 C -0.171 4.171 5 C 0.076 3.924 6 O -0.396 6.396 7 C 0.068 3.932 8 C 0.010 3.990 9 N -0.531 5.531 10 C 0.066 3.934 11 C -0.088 4.088 12 C 0.027 3.973 13 C -0.543 4.543 14 H 0.059 0.941 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.263 1.263 21 H 0.060 0.940 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.117 0.883 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.038 0.962 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.023 0.977 37 H 0.052 0.948 38 H 0.048 0.952 39 H -0.012 1.012 40 H -0.009 1.009 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.921 8.272 -10.134 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.019 4.019 4 C -0.229 4.229 5 C -0.001 4.001 6 O -0.314 6.314 7 C -0.009 4.009 8 C -0.118 4.118 9 N -0.255 5.255 10 C -0.061 4.061 11 C -0.126 4.126 12 C -0.010 4.010 13 C -0.580 4.580 14 H 0.077 0.923 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.790 3.210 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.187 1.187 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.135 0.865 30 H 0.077 0.923 31 H 0.133 0.867 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.006 0.994 40 H 0.010 0.990 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.851 8.096 -10.435 19.139 hybrid contribution 1.076 -0.257 1.308 1.713 sum -12.775 7.839 -9.127 17.549 Atomic orbital electron populations 1.21856 0.93469 1.02614 1.02678 1.21573 0.97284 0.93992 1.02231 1.21832 0.87031 0.96782 0.96216 1.22359 1.02735 1.00261 0.97573 1.22841 0.99353 0.82505 0.95360 1.87930 1.20805 1.27853 1.94815 1.22722 0.80419 1.01670 0.96063 1.22888 1.01115 0.88954 0.98820 1.62473 1.07124 1.14293 1.41654 1.22065 0.95402 0.98070 0.90569 1.21388 0.93458 0.99069 0.98680 1.18950 0.94925 0.93865 0.93275 1.21678 0.93948 1.30902 1.11519 0.92306 1.25990 1.03928 0.95065 0.94832 1.70098 1.37801 1.33804 1.15725 0.85438 0.79117 0.77630 0.78820 1.19718 1.20643 1.18743 0.92137 0.91095 0.91834 0.91463 0.92856 0.92917 0.90036 0.93755 0.86527 0.92342 0.86707 0.92147 0.94382 0.89851 0.91028 0.95910 0.92944 0.93332 0.99380 0.99039 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.21 71.98 0.66 -1.81 16 2 C -0.11 -2.59 4.71 30.59 0.14 -2.44 16 3 C 0.07 1.74 0.46 3.54 0.00 1.74 16 4 C -0.17 -4.12 7.20 71.98 0.52 -3.61 16 5 C 0.08 1.63 5.25 72.02 0.38 2.01 16 6 O -0.40 -9.54 10.33 -148.98 -1.54 -11.08 16 7 C 0.07 1.54 7.01 72.01 0.50 2.04 16 8 C 0.01 0.28 5.01 86.31 0.43 0.71 16 9 N -0.53 -15.84 4.51 -845.81 -3.81 -19.66 16 10 C 0.07 2.38 4.15 86.30 0.36 2.74 16 11 C -0.09 -3.76 4.87 30.59 0.15 -3.61 16 12 C 0.03 1.49 4.97 29.85 0.15 1.64 16 13 C -0.54 -31.56 9.11 25.60 0.23 -31.33 16 14 H 0.06 3.29 7.74 -2.90 -0.02 3.27 16 15 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 16 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 17 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 21 H 0.06 0.98 6.50 -2.38 -0.02 0.96 16 22 H 0.07 0.96 6.51 -2.39 -0.02 0.94 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.42 6.22 -2.38 -0.01 1.40 16 26 H 0.05 1.36 6.00 -2.39 -0.01 1.35 16 27 H 0.08 1.61 6.58 -2.39 -0.02 1.59 16 28 H 0.04 1.19 6.77 -2.39 -0.02 1.17 16 29 H 0.12 1.96 6.62 -2.39 -0.02 1.94 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.12 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 1.08 6.33 -2.39 -0.02 1.07 16 34 H 0.08 2.41 6.40 -2.39 -0.02 2.39 16 35 H 0.07 2.62 5.89 -2.39 -0.01 2.60 16 36 H 0.02 0.84 6.82 -2.39 -0.02 0.83 16 37 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.05 2.02 6.70 -2.38 -0.02 2.00 16 39 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 40 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -65.01 304.92 1.94 -63.06 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.99 Total: 9.71 kcal Atomic # 6 Polarization: -35.48 SS G_CDS: 3.99 Total: -31.48 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -3.53 Total: -77.02 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.54 Total: -11.08 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -65.01 1.94 -63.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336648231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.236 kcal (2) G-P(sol) polarization free energy of solvation -65.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds