Wall clock time and date at job start Sun Mar 29 2020 22:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47148 * 2 1 4 4 C 1.53000 * 109.50744 * 300.08473 * 3 2 1 5 5 C 1.53098 * 109.50576 * 60.21775 * 3 2 1 6 6 O 1.43023 * 109.25547 * 176.78164 * 5 3 2 7 7 C 1.43014 * 113.73473 * 301.32975 * 6 5 3 8 8 C 1.53096 * 109.25979 * 58.67482 * 7 6 5 9 9 N 1.47011 * 109.25456 * 303.14420 * 8 7 6 10 10 C 1.46910 * 110.99817 * 182.39325 * 9 8 7 11 11 C 1.53001 * 109.46736 * 46.36838 * 10 9 8 12 12 C 1.53002 * 109.46852 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47207 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99603 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99838 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00380 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99848 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47261 * 239.99776 * 17 15 13 20 20 H 1.48500 * 109.47454 * 119.99769 * 17 15 13 21 21 H 1.08999 * 109.47408 * 60.00056 * 1 2 3 22 22 H 1.09004 * 109.47570 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46984 * 300.00110 * 1 2 3 24 24 H 1.09004 * 109.46675 * 239.99813 * 2 1 3 25 25 H 1.08997 * 109.46597 * 120.00372 * 2 1 3 26 26 H 1.09004 * 109.47237 * 299.91691 * 4 3 2 27 27 H 1.09001 * 109.47125 * 59.91411 * 4 3 2 28 28 H 1.09001 * 109.47253 * 179.91248 * 4 3 2 29 29 H 1.08994 * 109.50716 * 296.71764 * 5 3 2 30 30 H 1.09000 * 109.50640 * 56.85424 * 5 3 2 31 31 H 1.09003 * 109.50286 * 178.60549 * 7 6 5 32 32 H 1.08998 * 109.51367 * 298.68747 * 7 6 5 33 33 H 1.09003 * 109.50439 * 183.20988 * 8 7 6 34 34 H 1.08997 * 109.50976 * 63.08707 * 8 7 6 35 35 H 1.08999 * 109.47206 * 286.36992 * 10 9 8 36 36 H 1.08998 * 109.47077 * 166.36588 * 10 9 8 37 37 H 1.08993 * 109.47525 * 59.99948 * 11 10 9 38 38 H 1.09006 * 109.47247 * 299.99399 * 11 10 9 39 39 H 1.09005 * 109.47493 * 59.99815 * 12 11 10 40 40 H 1.08998 * 109.47006 * 299.99778 * 12 11 10 41 41 H 0.97001 * 119.99667 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5287 2.1651 -1.2479 5 6 1.5346 2.1634 1.2525 6 8 2.0753 3.4870 1.2854 7 6 3.5049 3.5250 1.2869 8 6 4.0302 2.8179 0.0347 9 7 3.5101 1.4433 0.0000 10 6 4.0370 0.7102 -1.1589 11 6 5.5459 0.9404 -1.2649 12 6 6.0945 0.1774 -2.4723 13 6 7.5806 0.4046 -2.5772 14 1 8.0834 1.0309 -1.8552 15 6 8.2982 -0.1863 -3.5955 16 7 7.6859 -0.9485 -4.4751 17 14 10.1403 0.0948 -3.7251 18 1 10.5842 0.9842 -2.6218 19 1 10.4535 0.7312 -5.0298 20 1 10.8479 -1.2072 -3.6270 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 1.8920 1.6529 -2.1389 27 1 0.4387 2.1641 -1.2473 28 1 1.8911 3.1931 -1.2465 29 1 0.4462 2.2153 1.2283 30 1 1.8540 1.6177 2.1404 31 1 3.8414 4.5618 1.2876 32 1 3.8816 3.0196 2.1762 33 1 5.1197 2.7944 0.0601 34 1 3.6979 3.3555 -0.8533 35 1 3.5504 1.0672 -2.0666 36 1 3.8397 -0.3547 -1.0356 37 1 6.0326 0.5835 -0.3574 38 1 5.7432 2.0053 -1.3884 39 1 5.6078 0.5347 -3.3798 40 1 5.8972 -0.8875 -2.3494 41 1 6.7293 -1.0948 -4.4075 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336648232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:44 Heat of formation + Delta-G solvation = -59.819328 kcal Electronic energy + Delta-G solvation = -18467.060446 eV Core-core repulsion = 15767.359659 eV Total energy + Delta-G solvation = -2699.700786 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.39007 -36.56215 -35.06234 -33.51394 -31.15715 -29.88257 -28.19622 -26.93531 -25.23606 -24.53664 -22.48073 -21.81606 -20.21295 -18.38076 -16.92474 -16.36384 -16.17722 -15.44411 -15.28319 -14.63072 -14.20790 -13.80025 -13.66945 -13.53424 -13.26817 -12.85090 -12.65505 -12.30084 -11.89122 -11.79919 -11.42162 -11.33544 -11.28463 -11.10927 -10.78944 -10.66627 -10.42983 -10.24591 -10.11470 -9.81208 -9.70191 -9.47452 -8.52115 -8.30881 -8.07785 -6.35117 -4.03791 3.44231 3.48391 3.61685 3.81817 3.93704 4.55381 4.67934 4.81147 4.96276 5.03893 5.15593 5.25652 5.30189 5.35641 5.42320 5.48837 5.58674 5.61739 5.67453 5.70462 5.79535 5.86008 5.89491 5.97554 5.97981 6.05924 6.12471 6.27179 6.35288 6.56202 6.64712 6.92623 7.10176 7.26227 7.28941 7.41823 7.55457 8.24055 8.48687 8.90368 9.68674 11.05698 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034941 B = 0.005119 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.160568 B = 5468.427966 C = 6019.033616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C 0.073 3.927 4 C -0.178 4.178 5 C 0.076 3.924 6 O -0.387 6.387 7 C 0.063 3.937 8 C 0.010 3.990 9 N -0.526 5.526 10 C 0.051 3.949 11 C -0.104 4.104 12 C 0.009 3.991 13 C -0.600 4.600 14 H 0.049 0.951 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 1.074 2.926 18 H -0.289 1.289 19 H -0.287 1.287 20 H -0.287 1.287 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.044 0.956 35 H 0.034 0.966 36 H 0.072 0.928 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.004 0.996 40 H 0.007 0.993 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.652 5.770 10.645 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.017 4.017 4 C -0.237 4.237 5 C -0.001 4.001 6 O -0.305 6.305 7 C -0.014 4.014 8 C -0.118 4.118 9 N -0.250 5.250 10 C -0.076 4.076 11 C -0.142 4.142 12 C -0.028 4.028 13 C -0.638 4.638 14 H 0.067 0.933 15 C -0.190 4.190 16 N -0.552 5.552 17 Si 0.903 3.097 18 H -0.215 1.215 19 H -0.214 1.214 20 H -0.213 1.213 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.022 0.978 40 H 0.025 0.975 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.256 5.325 10.193 16.807 hybrid contribution -1.410 0.496 0.052 1.495 sum -13.666 5.821 10.245 18.044 Atomic orbital electron populations 1.21896 0.95688 1.01770 1.01858 1.21541 0.95381 0.94900 1.03176 1.21699 0.88618 0.95920 0.95435 1.22425 1.01516 1.01288 0.98460 1.22720 0.98151 0.83178 0.96100 1.87940 1.20546 1.27129 1.94896 1.22697 0.80696 1.00716 0.97243 1.22896 1.01773 0.89348 0.97790 1.62552 1.05423 1.13918 1.43100 1.22394 0.96990 0.98176 0.90061 1.21649 0.91613 1.00360 1.00589 1.19196 0.96605 0.94766 0.92256 1.22100 0.93161 1.33492 1.15042 0.93299 1.25856 1.06627 0.93727 0.92802 1.70723 1.12241 1.36227 1.36021 0.83481 0.74382 0.76182 0.75704 1.21533 1.21380 1.21326 0.92382 0.92540 0.92645 0.91238 0.91108 0.92124 0.91969 0.91965 0.88771 0.92596 0.88775 0.92482 0.88625 0.93790 0.94746 0.90944 0.92478 0.93087 0.97778 0.97506 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.21 37.16 0.34 -1.08 16 2 C -0.11 -1.31 4.69 -26.73 -0.13 -1.44 16 3 C 0.07 0.94 0.46 -131.49 -0.06 0.88 16 4 C -0.18 -2.29 7.35 37.16 0.27 -2.01 16 5 C 0.08 0.90 5.25 37.21 0.20 1.09 16 6 O -0.39 -5.17 10.28 -35.23 -0.36 -5.53 16 7 C 0.06 0.79 7.01 37.21 0.26 1.05 16 8 C 0.01 0.14 4.55 -3.71 -0.02 0.13 16 9 N -0.53 -7.97 4.64 -218.68 -1.01 -8.99 16 10 C 0.05 0.89 4.33 -3.82 -0.02 0.87 16 11 C -0.10 -2.19 4.42 -26.73 -0.12 -2.30 16 12 C 0.01 0.24 4.28 -27.88 -0.12 0.12 16 13 C -0.60 -17.38 9.11 -34.44 -0.31 -17.70 16 14 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 15 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 16 N -0.92 -28.49 13.65 55.43 0.76 -27.74 16 17 Si 1.07 25.75 29.90 -169.99 -5.08 20.67 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 22 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.45 6.51 -51.93 -0.34 0.12 16 24 H 0.07 0.89 6.60 -51.93 -0.34 0.55 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.84 6.26 -51.93 -0.33 0.51 16 27 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 28 H 0.06 0.86 6.07 -51.93 -0.32 0.54 16 29 H 0.09 0.95 6.62 -51.93 -0.34 0.61 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 1.45 6.05 -51.93 -0.31 1.14 16 34 H 0.04 0.66 6.39 -51.93 -0.33 0.33 16 35 H 0.03 0.62 5.93 -51.93 -0.31 0.31 16 36 H 0.07 1.28 6.86 -51.93 -0.36 0.92 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 1.05 6.28 -51.93 -0.33 0.73 16 39 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 40 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 41 H 0.27 8.32 7.22 -40.82 -0.29 8.03 16 LS Contribution 302.18 15.07 4.55 4.55 Total: -1.00 -31.04 302.18 -7.78 -38.82 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -6.83 Total: -1.70 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 0.20 Total: -20.10 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.26 Total: -36.72 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.36 Total: -5.53 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.04 -7.78 -38.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336648232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.996 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds