Wall clock time and date at job start Sun Mar 29 2020 22:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47148 * 2 1 4 4 C 1.53000 * 109.50744 * 300.08473 * 3 2 1 5 5 C 1.53098 * 109.50576 * 60.21775 * 3 2 1 6 6 O 1.43023 * 109.25547 * 176.78164 * 5 3 2 7 7 C 1.43014 * 113.73473 * 301.32975 * 6 5 3 8 8 C 1.53096 * 109.25979 * 58.67482 * 7 6 5 9 9 N 1.47011 * 109.25456 * 303.14420 * 8 7 6 10 10 C 1.46910 * 110.99817 * 182.39325 * 9 8 7 11 11 C 1.53001 * 109.46736 * 46.36838 * 10 9 8 12 12 C 1.53002 * 109.46852 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47207 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99603 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99838 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00380 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99848 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47261 * 239.99776 * 17 15 13 20 20 H 1.48500 * 109.47454 * 119.99769 * 17 15 13 21 21 H 1.08999 * 109.47408 * 60.00056 * 1 2 3 22 22 H 1.09004 * 109.47570 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46984 * 300.00110 * 1 2 3 24 24 H 1.09004 * 109.46675 * 239.99813 * 2 1 3 25 25 H 1.08997 * 109.46597 * 120.00372 * 2 1 3 26 26 H 1.09004 * 109.47237 * 299.91691 * 4 3 2 27 27 H 1.09001 * 109.47125 * 59.91411 * 4 3 2 28 28 H 1.09001 * 109.47253 * 179.91248 * 4 3 2 29 29 H 1.08994 * 109.50716 * 296.71764 * 5 3 2 30 30 H 1.09000 * 109.50640 * 56.85424 * 5 3 2 31 31 H 1.09003 * 109.50286 * 178.60549 * 7 6 5 32 32 H 1.08998 * 109.51367 * 298.68747 * 7 6 5 33 33 H 1.09003 * 109.50439 * 183.20988 * 8 7 6 34 34 H 1.08997 * 109.50976 * 63.08707 * 8 7 6 35 35 H 1.08999 * 109.47206 * 286.36992 * 10 9 8 36 36 H 1.08998 * 109.47077 * 166.36588 * 10 9 8 37 37 H 1.08993 * 109.47525 * 59.99948 * 11 10 9 38 38 H 1.09006 * 109.47247 * 299.99399 * 11 10 9 39 39 H 1.09005 * 109.47493 * 59.99815 * 12 11 10 40 40 H 1.08998 * 109.47006 * 299.99778 * 12 11 10 41 41 H 0.97001 * 119.99667 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5287 2.1651 -1.2479 5 6 1.5346 2.1634 1.2525 6 8 2.0753 3.4870 1.2854 7 6 3.5049 3.5250 1.2869 8 6 4.0302 2.8179 0.0347 9 7 3.5101 1.4433 0.0000 10 6 4.0370 0.7102 -1.1589 11 6 5.5459 0.9404 -1.2649 12 6 6.0945 0.1774 -2.4723 13 6 7.5806 0.4046 -2.5772 14 1 8.0834 1.0309 -1.8552 15 6 8.2982 -0.1863 -3.5955 16 7 7.6859 -0.9485 -4.4751 17 14 10.1403 0.0948 -3.7251 18 1 10.5842 0.9842 -2.6218 19 1 10.4535 0.7312 -5.0298 20 1 10.8479 -1.2072 -3.6270 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5139 0.8900 26 1 1.8920 1.6529 -2.1389 27 1 0.4387 2.1641 -1.2473 28 1 1.8911 3.1931 -1.2465 29 1 0.4462 2.2153 1.2283 30 1 1.8540 1.6177 2.1404 31 1 3.8414 4.5618 1.2876 32 1 3.8816 3.0196 2.1762 33 1 5.1197 2.7944 0.0601 34 1 3.6979 3.3555 -0.8533 35 1 3.5504 1.0672 -2.0666 36 1 3.8397 -0.3547 -1.0356 37 1 6.0326 0.5835 -0.3574 38 1 5.7432 2.0053 -1.3884 39 1 5.6078 0.5347 -3.3798 40 1 5.8972 -0.8875 -2.3494 41 1 6.7293 -1.0948 -4.4075 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336648232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:43 Heat of formation + Delta-G solvation = -80.144574 kcal Electronic energy + Delta-G solvation = -18467.941815 eV Core-core repulsion = 15767.359659 eV Total energy + Delta-G solvation = -2700.582155 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.48490 -37.75297 -36.50756 -35.26182 -32.91640 -30.82409 -29.58129 -28.12163 -26.85191 -25.60697 -24.34296 -22.92210 -21.82129 -19.52562 -18.90751 -17.60739 -17.24143 -16.68517 -16.44434 -15.82851 -15.68535 -15.30569 -15.02929 -14.98370 -14.75672 -14.16437 -13.83986 -13.50126 -13.42341 -13.05179 -12.84637 -12.62164 -12.54040 -12.34596 -12.18893 -11.96474 -11.93100 -11.75942 -11.62236 -11.43511 -11.24048 -10.72229 -10.57591 -10.48516 -9.31728 -8.72083 -6.42430 1.50722 1.60589 1.77179 2.54045 2.71593 2.90927 3.13311 3.66915 3.81201 3.91716 3.97333 4.03628 4.18757 4.24339 4.34196 4.41048 4.43610 4.51553 4.58033 4.62540 4.68624 4.73433 4.79944 4.83067 4.85984 4.91940 4.96897 5.05778 5.11250 5.16507 5.29076 5.36165 5.42257 5.47622 5.91355 5.99318 6.06944 6.15411 6.18544 6.55140 7.39961 8.68864 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034941 B = 0.005119 C = 0.004651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.160568 B = 5468.427966 C = 6019.033616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.071 3.929 4 C -0.173 4.173 5 C 0.076 3.924 6 O -0.396 6.396 7 C 0.068 3.932 8 C 0.008 3.992 9 N -0.529 5.529 10 C 0.065 3.935 11 C -0.088 4.088 12 C 0.011 3.989 13 C -0.618 4.618 14 H 0.050 0.950 15 C -0.040 4.040 16 N -0.939 5.939 17 Si 1.124 2.876 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.277 1.277 21 H 0.059 0.941 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.035 0.965 35 H 0.028 0.972 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.053 0.947 39 H -0.015 1.015 40 H -0.012 1.012 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.112 6.620 11.984 19.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.019 4.019 4 C -0.232 4.232 5 C -0.001 4.001 6 O -0.314 6.314 7 C -0.009 4.009 8 C -0.120 4.120 9 N -0.253 5.253 10 C -0.062 4.062 11 C -0.126 4.126 12 C -0.027 4.027 13 C -0.656 4.656 14 H 0.068 0.932 15 C -0.237 4.237 16 N -0.576 5.576 17 Si 0.944 3.056 18 H -0.194 1.194 19 H -0.203 1.203 20 H -0.203 1.203 21 H 0.078 0.922 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.135 0.865 30 H 0.078 0.922 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.003 0.997 40 H 0.007 0.993 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.747 6.183 11.551 18.280 hybrid contribution -1.318 0.226 -0.355 1.383 sum -14.065 6.409 11.196 19.085 Atomic orbital electron populations 1.21866 0.93448 1.02685 1.02689 1.21530 0.97319 0.93810 1.02208 1.21859 0.86873 0.96948 0.96226 1.22376 1.02831 1.00270 0.97687 1.22849 0.99406 0.82493 0.95324 1.87935 1.20775 1.27904 1.94798 1.22733 0.80434 1.01679 0.96014 1.22927 1.01231 0.89046 0.98788 1.62548 1.07276 1.14236 1.41283 1.22082 0.94561 0.98469 0.91091 1.21412 0.93871 0.99485 0.97857 1.19134 0.95661 0.94222 0.93658 1.22525 0.94676 1.33292 1.15063 0.93166 1.27492 1.11223 0.92763 0.92244 1.70865 1.11588 1.37905 1.37269 0.82862 0.68943 0.76983 0.76771 1.19377 1.20330 1.20274 0.92213 0.91707 0.91043 0.93041 0.91276 0.93784 0.89833 0.92999 0.86452 0.92159 0.86775 0.91970 0.89694 0.94648 0.95378 0.91272 0.92894 0.92852 0.99672 0.99336 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.21 71.98 0.66 -1.73 16 2 C -0.11 -2.45 4.69 30.59 0.14 -2.31 16 3 C 0.07 1.72 0.46 3.54 0.00 1.72 16 4 C -0.17 -4.25 7.35 71.98 0.53 -3.72 16 5 C 0.08 1.61 5.25 72.02 0.38 1.99 16 6 O -0.40 -9.62 10.28 -148.98 -1.53 -11.15 16 7 C 0.07 1.57 7.01 72.01 0.50 2.07 16 8 C 0.01 0.23 4.55 86.31 0.39 0.62 16 9 N -0.53 -15.75 4.64 -845.76 -3.92 -19.67 16 10 C 0.07 2.33 4.33 86.30 0.37 2.70 16 11 C -0.09 -3.77 4.42 30.60 0.14 -3.64 16 12 C 0.01 0.58 4.28 29.85 0.13 0.71 16 13 C -0.62 -36.27 9.11 25.60 0.23 -36.04 16 14 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 15 C -0.04 -2.38 5.46 84.65 0.46 -1.92 16 16 N -0.94 -59.47 13.65 21.45 0.29 -59.17 16 17 Si 1.12 51.21 29.90 68.60 2.05 53.26 16 18 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 H 0.06 0.94 6.43 -2.39 -0.02 0.93 16 22 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 23 H 0.07 0.93 6.51 -2.39 -0.02 0.91 16 24 H 0.05 1.31 6.60 -2.38 -0.02 1.30 16 25 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.04 1.21 6.26 -2.38 -0.01 1.20 16 27 H 0.08 1.67 6.43 -2.39 -0.02 1.65 16 28 H 0.05 1.38 6.07 -2.39 -0.01 1.36 16 29 H 0.12 1.95 6.62 -2.39 -0.02 1.93 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.08 2.55 6.05 -2.39 -0.01 2.54 16 34 H 0.04 1.06 6.39 -2.39 -0.02 1.04 16 35 H 0.03 1.04 5.93 -2.39 -0.01 1.02 16 36 H 0.07 2.50 6.86 -2.39 -0.02 2.48 16 37 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.05 2.23 6.28 -2.38 -0.01 2.22 16 39 H -0.02 -0.86 8.01 -2.38 -0.02 -0.88 16 40 H -0.01 -0.66 8.01 -2.39 -0.02 -0.68 16 41 H 0.25 16.37 7.22 -92.71 -0.67 15.70 16 Total: -1.00 -66.67 302.18 1.93 -64.75 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 1.09 Total: 11.53 kcal Atomic # 6 Polarization: -43.49 SS G_CDS: 3.94 Total: -39.54 kcal Atomic # 7 Polarization: -75.21 SS G_CDS: -3.63 Total: -78.84 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: -1.53 Total: -11.15 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 2.05 Total: 53.26 kcal Total: -66.67 1.93 -64.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336648232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.399 kcal (2) G-P(sol) polarization free energy of solvation -66.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds