Wall clock time and date at job start Sun Mar 29 2020 22:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00419 * 2 1 4 4 C 1.53003 * 109.47334 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46752 * 60.00357 * 4 3 2 6 6 C 1.52995 * 109.47306 * 300.00050 * 4 3 2 7 7 C 1.52995 * 109.46833 * 180.02562 * 4 3 2 8 8 N 1.46907 * 109.47146 * 184.81435 * 7 4 3 9 9 C 1.46898 * 111.00194 * 174.16498 * 8 7 4 10 10 C 1.53006 * 109.46704 * 185.47048 * 9 8 7 11 11 C 1.50690 * 115.55335 * 65.34261 * 10 9 8 12 12 H 1.08001 * 120.00535 * 268.84694 * 11 10 9 13 13 C 1.37879 * 120.00199 * 88.56776 * 11 10 9 14 14 N 1.31509 * 120.00344 * 175.67588 * 13 11 10 15 15 Si 1.86808 * 119.99767 * 355.68334 * 13 11 10 16 16 H 1.48500 * 109.47180 * 88.64992 * 15 13 11 17 17 H 1.48494 * 109.47059 * 208.64928 * 15 13 11 18 18 H 1.48501 * 109.46951 * 328.64927 * 15 13 11 19 19 C 1.52999 * 117.49266 * 211.01181 * 10 9 8 20 20 C 1.53002 * 117.49786 * 279.66817 * 10 9 8 21 21 H 1.09007 * 109.46351 * 299.99804 * 1 2 3 22 22 H 1.08993 * 109.47204 * 59.99333 * 1 2 3 23 23 H 1.08997 * 109.47181 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46833 * 60.00158 * 3 2 1 25 25 H 1.08995 * 109.47143 * 300.00263 * 3 2 1 26 26 H 1.09006 * 109.47192 * 183.06595 * 5 4 3 27 27 H 1.09000 * 109.47006 * 303.06239 * 5 4 3 28 28 H 1.09007 * 109.47489 * 63.06463 * 5 4 3 29 29 H 1.08992 * 109.47321 * 294.57218 * 6 4 3 30 30 H 1.09000 * 109.46946 * 54.57096 * 6 4 3 31 31 H 1.09000 * 109.47242 * 174.56724 * 6 4 3 32 32 H 1.08993 * 109.47368 * 64.81808 * 7 4 3 33 33 H 1.09001 * 109.47514 * 304.81000 * 7 4 3 34 34 H 1.00902 * 110.99780 * 298.12709 * 8 7 4 35 35 H 1.08997 * 109.46840 * 65.46970 * 9 8 7 36 36 H 1.08996 * 109.47101 * 305.46457 * 9 8 7 37 37 H 0.97001 * 120.00177 * 180.02562 * 14 13 11 38 38 H 1.08998 * 117.49807 * 215.00081 * 19 10 9 39 39 H 1.09002 * 117.50645 * 0.02606 * 19 10 9 40 40 H 1.09003 * 117.49569 * 359.97438 * 20 10 9 41 41 H 1.09004 * 117.49783 * 144.97513 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 6 3.9864 0.4255 -1.2503 6 6 3.9875 0.4250 1.2482 7 6 4.1578 2.5822 0.0000 8 7 5.6178 2.4683 -0.1169 9 6 6.2395 3.7917 -0.2587 10 6 7.7390 3.6259 -0.5138 11 6 8.1074 2.9603 -1.8146 12 1 8.2371 1.8889 -1.8553 13 6 8.2733 3.7185 -2.9542 14 7 8.6774 3.1501 -4.0691 15 14 7.9242 5.5532 -2.9144 16 1 9.1545 6.2826 -2.5149 17 1 7.4967 6.0051 -4.2628 18 1 6.8440 5.8304 -1.9338 19 6 8.6695 4.7233 0.0067 20 6 8.6359 3.3571 0.6962 21 1 -0.3632 0.5139 0.8901 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.6887 1.8463 0.8900 25 1 1.6887 1.8463 -0.8899 26 1 5.0679 0.2918 -1.2238 27 1 3.5003 -0.5497 -1.2782 28 1 3.7122 0.9937 -2.1392 29 1 3.7518 1.0121 2.1357 30 1 3.4697 -0.5328 1.2982 31 1 5.0630 0.2545 1.2004 32 1 3.9065 3.0914 0.9303 33 1 3.7694 3.1533 -0.8432 34 1 6.0056 1.9689 0.6695 35 1 6.0876 4.3643 0.6562 36 1 5.7844 4.3189 -1.0971 37 1 8.7944 3.6835 -4.8708 38 1 9.5481 4.9637 -0.5918 39 1 8.2135 5.5630 0.5312 40 1 8.1577 3.2987 1.6741 41 1 9.4922 2.6983 0.5515 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336665587.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:20 Heat of formation + Delta-G solvation = -49.185760 kcal Electronic energy + Delta-G solvation = -18129.451524 eV Core-core repulsion = 15430.211844 eV Total energy + Delta-G solvation = -2699.239680 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.89360 -38.89452 -37.29495 -34.26805 -33.92377 -28.46933 -28.17168 -28.04329 -27.29193 -26.29910 -24.17921 -23.14831 -20.79479 -19.79842 -18.27243 -17.37128 -16.97417 -16.71769 -16.49903 -16.14498 -15.46911 -15.05315 -14.86295 -14.69981 -14.47805 -14.15969 -13.83175 -13.35851 -13.29131 -12.98893 -12.58853 -12.55098 -12.37426 -12.28412 -12.13125 -11.95550 -11.69130 -11.62290 -11.38886 -11.33337 -10.81912 -10.54204 -10.52861 -10.21134 -8.99499 -8.17999 -6.19804 1.38382 1.40369 1.51961 2.44058 2.75831 3.17434 3.20347 3.66756 3.88815 3.98086 4.09717 4.24279 4.42132 4.44349 4.48419 4.50369 4.53588 4.58933 4.62395 4.67485 4.78704 4.84840 4.87970 4.88860 4.90908 5.00407 5.13269 5.14816 5.18316 5.30339 5.46803 5.52174 5.57884 5.63076 5.81424 6.26611 6.36592 6.48266 6.74512 6.86978 7.45992 8.98868 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030057 B = 0.005771 C = 0.005419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.330487 B = 4850.954949 C = 5165.880058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.076 3.924 4 C -0.055 4.055 5 C -0.118 4.118 6 C -0.132 4.132 7 C 0.074 3.926 8 N -0.680 5.680 9 C 0.108 3.892 10 C -0.018 4.018 11 C -0.452 4.452 12 H 0.028 0.972 13 C 0.013 3.987 14 N -0.958 5.958 15 Si 0.939 3.061 16 H -0.271 1.271 17 H -0.304 1.304 18 H -0.236 1.236 19 C -0.200 4.200 20 C -0.163 4.163 21 H 0.051 0.949 22 H 0.044 0.956 23 H 0.095 0.905 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.034 0.966 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.341 0.659 35 H 0.030 0.970 36 H 0.048 0.952 37 H 0.260 0.740 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.043 -0.439 12.563 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.001 4.001 4 C -0.056 4.056 5 C -0.175 4.175 6 C -0.189 4.189 7 C -0.056 4.056 8 N -0.311 5.311 9 C -0.021 4.021 10 C -0.020 4.020 11 C -0.490 4.490 12 H 0.046 0.954 13 C -0.183 4.183 14 N -0.600 5.600 15 Si 0.765 3.235 16 H -0.197 1.197 17 H -0.232 1.232 18 H -0.159 1.159 19 C -0.238 4.238 20 C -0.201 4.201 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.113 0.887 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.160 0.840 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.918 -0.693 11.718 18.983 hybrid contribution 0.027 1.136 -0.006 1.136 sum -14.891 0.443 11.713 18.951 Atomic orbital electron populations 1.22898 0.79882 1.03630 1.00633 1.87842 1.20977 1.28241 1.95500 1.22473 0.92545 0.84515 1.00559 1.20501 0.92938 0.95206 0.96910 1.21523 1.00923 0.99046 0.96028 1.21731 1.00979 1.00359 0.95837 1.21881 0.88273 0.95490 0.99922 1.60005 1.03359 1.18739 1.49012 1.21490 0.93374 0.89402 0.97836 1.19349 0.89828 0.99160 0.93615 1.20291 1.43732 0.93089 0.91905 0.95394 1.25773 0.94684 1.02958 0.94864 1.70066 1.49744 1.38089 1.02065 0.85902 0.80078 0.80725 0.76770 1.19692 1.23185 1.15903 1.23020 1.02836 0.92851 1.05069 1.22808 1.02762 0.97938 0.96554 0.93033 0.93755 0.88657 0.91929 0.93383 0.93332 0.92930 0.94698 0.91978 0.92145 0.92919 0.94030 0.92291 0.83990 0.95226 0.93347 0.93101 0.91232 0.88162 0.87825 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.41 -9.56 9.21 -148.98 -1.37 -10.93 16 3 C 0.08 1.71 4.81 71.98 0.35 2.06 16 4 C -0.06 -1.46 0.68 -52.18 -0.04 -1.50 16 5 C -0.12 -3.80 8.11 71.98 0.58 -3.22 16 6 C -0.13 -3.17 8.03 71.98 0.58 -2.59 16 7 C 0.07 2.11 4.64 86.30 0.40 2.51 16 8 N -0.68 -24.04 5.42 -513.89 -2.78 -26.82 16 9 C 0.11 4.17 5.18 86.31 0.45 4.62 16 10 C -0.02 -0.81 1.02 -52.93 -0.05 -0.87 16 11 C -0.45 -25.77 9.33 25.60 0.24 -25.53 16 12 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 13 C 0.01 0.74 5.47 84.66 0.46 1.20 16 14 N -0.96 -61.47 13.96 21.45 0.30 -61.17 16 15 Si 0.94 45.21 24.89 68.60 1.71 46.92 16 16 H -0.27 -12.55 7.10 99.48 0.71 -11.85 16 17 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 18 H -0.24 -10.22 5.76 99.48 0.57 -9.65 16 19 C -0.20 -7.95 7.65 30.62 0.23 -7.72 16 20 C -0.16 -6.19 9.96 30.62 0.30 -5.88 16 21 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 22 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 26 H 0.05 1.81 7.59 -2.38 -0.02 1.79 16 27 H 0.05 1.61 7.59 -2.39 -0.02 1.59 16 28 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.47 7.52 -2.39 -0.02 1.45 16 31 H 0.05 1.36 7.07 -2.39 -0.02 1.34 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.79 8.07 -2.39 -0.02 1.77 16 34 H 0.34 11.16 7.38 -89.69 -0.66 10.50 16 35 H 0.03 0.98 8.09 -2.39 -0.02 0.96 16 36 H 0.05 2.04 6.50 -2.39 -0.02 2.02 16 37 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 38 H 0.07 3.02 7.27 -2.39 -0.02 3.01 16 39 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 40 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -66.86 322.33 2.78 -64.08 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: 0.17 Total: 23.18 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 4.75 Total: -35.26 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -2.48 Total: -87.99 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -1.37 Total: -10.93 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 1.71 Total: 46.92 kcal Total: -66.86 2.78 -64.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336665587.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.897 kcal (2) G-P(sol) polarization free energy of solvation -66.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds