Wall clock time and date at job start Sun Mar 29 2020 22:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 C 1.52997 * 109.47412 * 179.97438 * 3 2 1 5 5 O 1.42894 * 109.47542 * 180.02562 * 4 3 2 6 6 C 1.42898 * 114.00475 * 180.02562 * 5 4 3 7 7 H 1.09001 * 112.90582 * 21.74156 * 6 5 4 8 8 C 1.53778 * 113.61511 * 250.49374 * 6 5 4 9 9 C 1.53783 * 87.08316 * 220.01369 * 8 6 5 10 10 H 1.09000 * 113.61082 * 140.06239 * 9 8 6 11 11 N 1.46492 * 113.61614 * 270.88217 * 9 8 6 12 12 C 1.36935 * 120.00376 * 255.49414 * 11 9 8 13 13 H 1.08003 * 119.99724 * 0.02562 * 12 11 9 14 14 C 1.38810 * 120.00063 * 180.02562 * 12 11 9 15 15 N 1.31622 * 119.99887 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00212 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47297 * 89.99941 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00122 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00115 * 16 14 12 20 20 C 1.53781 * 113.61824 * 152.99372 * 6 5 4 21 21 C 1.53002 * 113.61029 * 25.43776 * 20 6 5 22 22 C 1.52993 * 113.61837 * 254.53171 * 20 6 5 23 23 H 1.09004 * 109.46979 * 60.00206 * 1 2 3 24 24 H 1.08997 * 109.46746 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46933 * 300.00082 * 1 2 3 26 26 H 1.08998 * 109.47458 * 240.00416 * 2 1 3 27 27 H 1.08995 * 109.47254 * 119.99837 * 2 1 3 28 28 H 1.09007 * 109.47152 * 60.00115 * 3 2 1 29 29 H 1.08998 * 109.47254 * 300.00445 * 3 2 1 30 30 H 1.09006 * 109.47287 * 60.00051 * 4 3 2 31 31 H 1.09007 * 109.47098 * 300.00449 * 4 3 2 32 32 H 1.09009 * 113.61327 * 105.47000 * 8 6 5 33 33 H 1.08998 * 113.69387 * 334.57631 * 8 6 5 34 34 H 0.97009 * 119.99477 * 75.49999 * 11 9 8 35 35 H 0.97006 * 119.99732 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.46949 * 157.49635 * 21 20 6 37 37 H 1.08999 * 109.46955 * 277.49411 * 21 20 6 38 38 H 1.08995 * 109.47683 * 37.49703 * 21 20 6 39 39 H 1.09005 * 109.47034 * 322.50170 * 22 20 6 40 40 H 1.09000 * 109.46961 * 82.49979 * 22 20 6 41 41 H 1.08998 * 109.47151 * 202.50222 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7898 0.0012 6 6 5.4708 2.9027 0.0013 7 1 5.9675 2.0067 -0.3710 8 6 6.0477 3.4198 1.3297 9 6 7.0317 4.2501 0.4885 10 1 7.2061 5.2513 0.8827 11 7 8.2726 3.5410 0.1672 12 6 9.4302 3.8520 0.8293 13 1 9.4282 4.6200 1.5887 14 6 10.6061 3.1804 0.5243 15 7 11.7186 3.4791 1.1611 16 14 10.6093 1.8517 -0.7887 17 1 10.9074 2.4617 -2.1095 18 1 9.2767 1.1981 -0.8348 19 1 11.6464 0.8391 -0.4657 20 6 5.9858 4.2031 -0.6379 21 6 4.9773 5.3526 -0.5862 22 6 6.5916 4.0045 -2.0287 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9338 0.9286 -0.8891 31 1 3.9330 0.9288 0.8909 32 1 6.5294 2.6458 1.9273 33 1 5.3472 4.0246 1.9055 34 1 8.2742 2.8510 -0.5147 35 1 12.5405 3.0100 0.9477 36 1 5.5048 6.3028 -0.6714 37 1 4.2712 5.2538 -1.4106 38 1 4.4377 5.3203 0.3602 39 1 7.1403 3.0630 -2.0549 40 1 5.7948 3.9814 -2.7721 41 1 7.2712 4.8274 -2.2499 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336765654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:50 Heat of formation + Delta-G solvation = -33.793220 kcal Electronic energy + Delta-G solvation = -17993.162742 eV Core-core repulsion = 15294.590532 eV Total energy + Delta-G solvation = -2698.572210 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.79543 -36.98239 -34.78906 -33.37768 -30.86191 -29.88739 -28.96731 -27.02261 -24.49418 -23.35430 -22.39226 -21.51297 -21.21173 -18.29869 -17.20813 -16.41792 -16.03307 -15.00586 -14.75125 -14.56057 -14.21255 -13.76303 -13.43220 -12.98906 -12.92122 -12.55990 -12.34824 -12.16800 -11.83513 -11.79437 -11.67731 -11.30995 -11.26996 -11.12320 -11.00197 -10.92301 -10.74286 -10.44479 -10.22755 -10.12261 -9.60122 -9.48611 -8.92908 -8.90471 -7.29311 -5.80171 -3.15847 3.33199 3.36055 3.41870 3.84162 4.55215 4.74766 4.80915 4.90226 5.00014 5.01092 5.15995 5.21636 5.39031 5.40697 5.46199 5.55470 5.60038 5.64027 5.68014 5.71158 5.78427 5.84364 5.91709 6.06343 6.09962 6.12392 6.15696 6.21797 6.32803 6.37862 6.42860 6.53478 6.75234 6.84763 6.93050 7.57281 7.98349 8.39679 9.17281 9.89596 10.09110 11.38091 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028747 B = 0.005348 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.789236 B = 5234.349937 C = 5635.741825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.117 4.117 4 C 0.060 3.940 5 O -0.374 6.374 6 C 0.073 3.927 7 H 0.078 0.922 8 C -0.187 4.187 9 C 0.181 3.819 10 H 0.076 0.924 11 N -0.730 5.730 12 C -0.244 4.244 13 H 0.093 0.907 14 C 0.007 3.993 15 N -0.932 5.932 16 Si 0.880 3.120 17 H -0.282 1.282 18 H -0.279 1.279 19 H -0.290 1.290 20 C -0.099 4.099 21 C -0.110 4.110 22 C -0.129 4.129 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.362 0.638 35 H 0.260 0.740 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.046 0.954 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.634 -3.823 -4.198 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.155 4.155 4 C -0.017 4.017 5 O -0.294 6.294 6 C 0.016 3.984 7 H 0.096 0.904 8 C -0.228 4.228 9 C 0.070 3.930 10 H 0.094 0.906 11 N -0.370 5.370 12 C -0.374 4.374 13 H 0.110 0.890 14 C -0.189 4.189 15 N -0.579 5.579 16 Si 0.710 3.290 17 H -0.209 1.209 18 H -0.205 1.205 19 H -0.216 1.216 20 C -0.101 4.101 21 C -0.168 4.168 22 C -0.187 4.187 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.523 -3.567 -4.049 20.255 hybrid contribution 0.351 -1.420 -0.880 1.707 sum -19.172 -4.987 -4.928 20.414 Atomic orbital electron populations 1.21750 0.95583 1.01543 1.01936 1.21453 0.96048 0.96411 1.02188 1.21533 0.94004 0.96841 1.03086 1.22477 0.94560 0.84928 0.99750 1.87885 1.21653 1.25081 1.94732 1.23877 0.79540 0.97215 0.97777 0.90449 1.24263 0.99850 1.01712 0.96946 1.20985 0.84476 0.95335 0.92222 0.90597 1.42568 1.05177 1.43657 1.45635 1.19112 0.84936 1.17516 1.15832 0.88955 1.24651 0.95476 0.99477 0.99317 1.69696 0.99395 1.44627 1.44226 0.86622 0.76971 0.82662 0.82705 1.20863 1.20546 1.21590 1.22691 0.96599 0.94795 0.96008 1.21314 0.97409 0.96147 1.01911 1.21606 0.99832 1.02000 0.95241 0.92696 0.92761 0.92642 0.91955 0.91868 0.91277 0.91366 0.93933 0.93713 0.91307 0.90255 0.80403 0.92995 0.92818 0.92918 0.92227 0.93109 0.93448 0.91851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -1.06 5.93 -26.73 -0.16 -1.22 16 3 C -0.12 -1.22 5.58 -26.73 -0.15 -1.37 16 4 C 0.06 0.76 5.79 37.16 0.22 0.98 16 5 O -0.37 -5.74 9.44 -35.23 -0.33 -6.08 16 6 C 0.07 1.22 3.59 -25.92 -0.09 1.13 16 7 H 0.08 1.34 7.72 -51.93 -0.40 0.94 16 8 C -0.19 -3.34 7.36 -25.92 -0.19 -3.53 16 9 C 0.18 3.58 4.01 -67.12 -0.27 3.31 16 10 H 0.08 1.53 8.08 -51.93 -0.42 1.11 16 11 N -0.73 -17.24 4.67 -52.64 -0.25 -17.48 16 12 C -0.24 -6.86 10.46 -15.06 -0.16 -7.02 16 13 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 14 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 15 N -0.93 -29.17 13.97 55.49 0.78 -28.40 16 16 Si 0.88 22.02 27.73 -169.99 -4.71 17.31 16 17 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 C -0.10 -1.65 1.34 -153.70 -0.21 -1.86 16 21 C -0.11 -1.59 8.46 37.16 0.31 -1.28 16 22 C -0.13 -2.12 8.58 37.15 0.32 -1.80 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 33 H 0.08 1.31 7.66 -51.93 -0.40 0.91 16 34 H 0.36 8.41 4.13 -40.82 -0.17 8.25 16 35 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.85 7.19 -51.93 -0.37 0.48 16 39 H 0.05 0.87 6.58 -51.93 -0.34 0.53 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 324.77 15.07 4.89 4.89 Total: -1.00 -30.15 324.77 -7.34 -37.49 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -7.61 Total: 5.57 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -0.10 Total: -13.31 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.53 Total: -45.88 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.33 Total: -6.08 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.15 -7.34 -37.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336765654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.696 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds