Wall clock time and date at job start Sun Mar 29 2020 22:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 C 1.52997 * 109.47412 * 179.97438 * 3 2 1 5 5 O 1.42894 * 109.47542 * 180.02562 * 4 3 2 6 6 C 1.42898 * 114.00475 * 180.02562 * 5 4 3 7 7 H 1.09001 * 112.90582 * 21.74156 * 6 5 4 8 8 C 1.53778 * 113.61511 * 250.49374 * 6 5 4 9 9 C 1.53783 * 87.08316 * 220.01369 * 8 6 5 10 10 H 1.09000 * 113.61082 * 140.06239 * 9 8 6 11 11 N 1.46492 * 113.61614 * 270.88217 * 9 8 6 12 12 C 1.36935 * 120.00376 * 255.49414 * 11 9 8 13 13 H 1.08003 * 119.99724 * 0.02562 * 12 11 9 14 14 C 1.38810 * 120.00063 * 180.02562 * 12 11 9 15 15 N 1.31622 * 119.99887 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00212 * 359.97438 * 14 12 11 17 17 H 1.48506 * 109.47297 * 89.99941 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00122 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00115 * 16 14 12 20 20 C 1.53781 * 113.61824 * 152.99372 * 6 5 4 21 21 C 1.53002 * 113.61029 * 25.43776 * 20 6 5 22 22 C 1.52993 * 113.61837 * 254.53171 * 20 6 5 23 23 H 1.09004 * 109.46979 * 60.00206 * 1 2 3 24 24 H 1.08997 * 109.46746 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46933 * 300.00082 * 1 2 3 26 26 H 1.08998 * 109.47458 * 240.00416 * 2 1 3 27 27 H 1.08995 * 109.47254 * 119.99837 * 2 1 3 28 28 H 1.09007 * 109.47152 * 60.00115 * 3 2 1 29 29 H 1.08998 * 109.47254 * 300.00445 * 3 2 1 30 30 H 1.09006 * 109.47287 * 60.00051 * 4 3 2 31 31 H 1.09007 * 109.47098 * 300.00449 * 4 3 2 32 32 H 1.09009 * 113.61327 * 105.47000 * 8 6 5 33 33 H 1.08998 * 113.69387 * 334.57631 * 8 6 5 34 34 H 0.97009 * 119.99477 * 75.49999 * 11 9 8 35 35 H 0.97006 * 119.99732 * 180.02562 * 15 14 12 36 36 H 1.09005 * 109.46949 * 157.49635 * 21 20 6 37 37 H 1.08999 * 109.46955 * 277.49411 * 21 20 6 38 38 H 1.08995 * 109.47683 * 37.49703 * 21 20 6 39 39 H 1.09005 * 109.47034 * 322.50170 * 22 20 6 40 40 H 1.09000 * 109.46961 * 82.49979 * 22 20 6 41 41 H 1.08998 * 109.47151 * 202.50222 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7898 0.0012 6 6 5.4708 2.9027 0.0013 7 1 5.9675 2.0067 -0.3710 8 6 6.0477 3.4198 1.3297 9 6 7.0317 4.2501 0.4885 10 1 7.2061 5.2513 0.8827 11 7 8.2726 3.5410 0.1672 12 6 9.4302 3.8520 0.8293 13 1 9.4282 4.6200 1.5887 14 6 10.6061 3.1804 0.5243 15 7 11.7186 3.4791 1.1611 16 14 10.6093 1.8517 -0.7887 17 1 10.9074 2.4617 -2.1095 18 1 9.2767 1.1981 -0.8348 19 1 11.6464 0.8391 -0.4657 20 6 5.9858 4.2031 -0.6379 21 6 4.9773 5.3526 -0.5862 22 6 6.5916 4.0045 -2.0287 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6766 1.9564 -0.8899 30 1 3.9338 0.9286 -0.8891 31 1 3.9330 0.9288 0.8909 32 1 6.5294 2.6458 1.9273 33 1 5.3472 4.0246 1.9055 34 1 8.2742 2.8510 -0.5147 35 1 12.5405 3.0100 0.9477 36 1 5.5048 6.3028 -0.6714 37 1 4.2712 5.2538 -1.4106 38 1 4.4377 5.3203 0.3602 39 1 7.1403 3.0630 -2.0549 40 1 5.7948 3.9814 -2.7721 41 1 7.2712 4.8274 -2.2499 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336765654.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:50 Heat of formation + Delta-G solvation = -51.301297 kcal Electronic energy + Delta-G solvation = -17993.921949 eV Core-core repulsion = 15294.590532 eV Total energy + Delta-G solvation = -2699.331417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.20142 -38.13378 -35.85068 -35.15138 -32.82452 -31.26110 -29.90940 -28.28096 -26.21768 -24.50422 -23.79374 -23.04934 -21.99897 -20.17349 -18.88452 -17.69609 -16.96415 -16.55720 -16.24931 -16.05830 -15.41964 -14.95168 -14.62300 -14.48619 -14.28142 -14.07854 -13.69802 -13.28835 -13.09084 -12.98647 -12.92357 -12.82454 -12.66532 -12.31346 -12.22434 -12.08573 -11.94294 -11.84035 -11.67669 -11.52597 -11.41636 -10.92689 -10.89475 -10.19949 -9.31972 -8.04726 -5.38287 1.33324 1.37344 1.43825 2.44959 2.72263 3.25001 3.41679 3.58455 3.73141 3.97933 4.00800 4.13181 4.16699 4.22402 4.37500 4.41128 4.46535 4.54067 4.70614 4.76241 4.85655 4.86884 4.93682 4.95017 4.99975 5.04975 5.09717 5.10645 5.19492 5.25180 5.28252 5.35701 5.44948 5.49384 5.57629 5.77410 6.20194 6.37574 7.04727 7.80575 7.99938 9.16846 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028747 B = 0.005348 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.789236 B = 5234.349937 C = 5635.741825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.110 4.110 4 C 0.052 3.948 5 O -0.378 6.378 6 C 0.084 3.916 7 H 0.072 0.928 8 C -0.180 4.180 9 C 0.161 3.839 10 H 0.065 0.935 11 N -0.731 5.731 12 C -0.231 4.231 13 H 0.059 0.941 14 C -0.060 4.060 15 N -0.982 5.982 16 Si 0.948 3.052 17 H -0.274 1.274 18 H -0.256 1.256 19 H -0.294 1.294 20 C -0.088 4.088 21 C -0.106 4.106 22 C -0.129 4.129 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.094 0.906 34 H 0.366 0.634 35 H 0.258 0.742 36 H 0.058 0.942 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.064 -4.782 -5.781 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.148 4.148 4 C -0.024 4.024 5 O -0.297 6.297 6 C 0.026 3.974 7 H 0.090 0.910 8 C -0.221 4.221 9 C 0.051 3.949 10 H 0.083 0.917 11 N -0.373 5.373 12 C -0.362 4.362 13 H 0.077 0.923 14 C -0.252 4.252 15 N -0.632 5.632 16 Si 0.775 3.225 17 H -0.200 1.200 18 H -0.181 1.181 19 H -0.220 1.220 20 C -0.089 4.089 21 C -0.163 4.163 22 C -0.187 4.187 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.201 0.799 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.027 -4.519 -5.639 23.183 hybrid contribution 1.029 -1.050 -0.302 1.500 sum -20.999 -5.569 -5.942 22.523 Atomic orbital electron populations 1.21744 0.94601 1.02237 1.02138 1.21448 0.96876 0.95170 1.02410 1.21508 0.92188 0.98063 1.03044 1.22706 0.96074 0.83676 0.99966 1.87873 1.20382 1.26774 1.94648 1.23623 0.80504 0.96933 0.96322 0.90977 1.24158 0.99419 1.01000 0.97487 1.21233 0.84059 0.94716 0.94883 0.91700 1.42467 1.05144 1.44256 1.45446 1.19060 0.86635 1.15898 1.14635 0.92317 1.25438 0.95034 1.02472 1.02212 1.69876 1.00189 1.46554 1.46618 0.85521 0.77809 0.79483 0.79677 1.19999 1.18093 1.22038 1.22603 0.95515 0.95751 0.95064 1.21304 0.97032 0.95343 1.02635 1.21610 1.00427 1.01112 0.95536 0.92403 0.91863 0.92568 0.91582 0.91848 0.91520 0.91184 0.93322 0.93918 0.93140 0.88784 0.79923 0.93265 0.92253 0.91331 0.92144 0.94124 0.90891 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.15 16 2 C -0.12 -1.80 5.93 30.60 0.18 -1.62 16 3 C -0.11 -2.03 5.58 30.59 0.17 -1.86 16 4 C 0.05 1.21 5.79 71.98 0.42 1.63 16 5 O -0.38 -10.62 9.44 -148.98 -1.41 -12.03 16 6 C 0.08 2.63 3.59 31.12 0.11 2.74 16 7 H 0.07 2.35 7.72 -2.39 -0.02 2.33 16 8 C -0.18 -6.27 7.36 31.12 0.23 -6.04 16 9 C 0.16 6.26 4.01 45.52 0.18 6.44 16 10 H 0.06 2.64 8.08 -2.39 -0.02 2.62 16 11 N -0.73 -34.35 4.67 -320.45 -1.50 -35.84 16 12 C -0.23 -13.27 10.46 84.03 0.88 -12.39 16 13 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 14 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 15 N -0.98 -63.16 13.97 21.65 0.30 -62.86 16 16 Si 0.95 45.46 27.73 68.60 1.90 47.37 16 17 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.26 -11.16 6.52 99.48 0.65 -10.51 16 19 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 20 C -0.09 -2.74 1.34 -51.66 -0.07 -2.81 16 21 C -0.11 -2.77 8.46 71.98 0.61 -2.16 16 22 C -0.13 -3.91 8.58 71.98 0.62 -3.29 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.04 1.00 8.14 -2.38 -0.02 0.99 16 32 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.09 2.98 7.66 -2.39 -0.02 2.96 16 34 H 0.37 16.52 4.13 -92.70 -0.38 16.14 16 35 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 36 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.57 7.19 -2.39 -0.02 1.55 16 39 H 0.04 1.29 6.58 -2.38 -0.02 1.28 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -64.88 324.77 4.33 -60.55 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.52 Total: 26.41 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 4.51 Total: -23.59 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -1.19 Total: -98.71 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: -1.41 Total: -12.03 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.37 kcal Total: -64.88 4.33 -60.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336765654.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.244 kcal (2) G-P(sol) polarization free energy of solvation -64.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds